package eu.openaire.urls_controller.util; import com.google.common.collect.SetMultimap; import eu.openaire.urls_controller.models.Payload; import org.apache.commons.compress.archivers.tar.TarArchiveEntry; import org.apache.commons.compress.archivers.tar.TarArchiveInputStream; import org.apache.commons.compress.compressors.zstandard.ZstdCompressorInputStream; import org.apache.commons.lang.StringUtils; import org.slf4j.Logger; import org.slf4j.LoggerFactory; import org.springframework.beans.factory.annotation.Autowired; import org.springframework.stereotype.Component; import java.io.BufferedInputStream; import java.io.BufferedOutputStream; import java.io.File; import java.nio.file.Files; import java.nio.file.Path; import java.nio.file.Paths; import java.util.List; @Component public class FileDecompressor { private static final Logger logger = LoggerFactory.getLogger(FileDecompressor.class); @Autowired private FileUtils fileUtils; boolean decompressAndUploadFullTexts(String zstdFileFullPath, Path curBatchPath, String targetDirectory, List fileNamesForCurBatch, int batchCounter, SetMultimap allFileNamesWithPayloads, long assignmentsBatchCounter) { try { decompressFiles(zstdFileFullPath, curBatchPath); String[] extractedFileNames = new File(targetDirectory).list(); if ( extractedFileNames == null ) { logger.error("There was an error when acquiring the list of extracted files of directory: " + targetDirectory); return false; } else if ( extractedFileNames.length == 0 ) { // The directory might have only two files, the "tar-file" and the "tar.zstd-file", if the full-texts failed to be decompressed or untarred.. logger.error("No full-texts' fleNames where extracted from directory: " + targetDirectory); return false; } else if ( extractedFileNames.length != fileNamesForCurBatch.size() ) { logger.warn("The number of extracted files (" + extractedFileNames.length + ") was not equal to the number of files (" + fileNamesForCurBatch.size() + ") of the current batch_" + batchCounter); // We do NOT have to find and cross-reference the missing files with the urlReports, in order to set their locations to , // since, in the end of each assignments-batch, an iteration will be made and for all the non-retrieved and non-uploaded full-texts, the app will set them to null. } fileUtils.uploadFullTexts(extractedFileNames, targetDirectory, allFileNamesWithPayloads, batchCounter); return true; } catch (Exception e) { logger.error("Could not extract and upload the full-texts for batch_" + batchCounter + " of assignments_" + assignmentsBatchCounter + GenericUtils.endOfLine + e.getMessage(), e); // It shows the response body (after Spring v.2.5.6). return false; } finally { fileUtils.deleteDirectory(curBatchPath.toFile()); } } public void decompressFiles(String zstdSource, Path targetDir) throws Exception { // Decompress the zstd file. String tarPathStr = StringUtils.replace(zstdSource, ".zstd", "", 1); // Remove the ".zstd" extension. Path tarPath = Paths.get(tarPathStr); int readByte = -1; try ( ZstdCompressorInputStream zsIn = new ZstdCompressorInputStream(new BufferedInputStream(Files.newInputStream(Paths.get(zstdSource)), FileUtils.tenMb)); BufferedOutputStream out = new BufferedOutputStream(Files.newOutputStream(tarPath), FileUtils.tenMb) ) { while ( (readByte = zsIn.read()) != -1 ) out.write(readByte); } finally { fileUtils.deleteFile(zstdSource); // Delete the initial zstd file. } // Now we have a decompressed tar-file, which we will Un-tar, in order to extract the full-text files. try ( TarArchiveInputStream tarInput = new TarArchiveInputStream(new BufferedInputStream(Files.newInputStream(tarPath)), FileUtils.tenMb) ) { TarArchiveEntry entry; while ( ((entry = (TarArchiveEntry) tarInput.getNextEntry()) != null) ) { // Copy an individual entry. try ( BufferedOutputStream bufferedOutputStream = new BufferedOutputStream(Files.newOutputStream(targetDir.resolve(entry.getName())), FileUtils.tenMb) ) { while ( (readByte = tarInput.read()) != -1 ) bufferedOutputStream.write(readByte); } // The exception will be given to the caller method. // No need to close the tarEntry (no "close()" method is provided). } } finally { fileUtils.deleteFile(tarPathStr); // Delete the decompressed tar file. } // Now we have a batch-directory which contains the tar-file along with the extracted full-text files. // After uploading the full-texts, the batch-directories will be deleted. } }