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Move some code from "FileUtils.getAndUploadFullTexts()" to two separate methods.

This commit is contained in:
Lampros Smyrnaios 2024-03-20 16:53:03 +02:00
parent 56d233d38e
commit b9b29dd51c
1 changed files with 72 additions and 56 deletions
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128
src/main/java/eu/openaire/urls_controller/util/FileUtils.java
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@ -112,36 +112,7 @@ public class FileUtils {
HashMultimap<String, Payload> allFileNamesWithPayloads = HashMultimap.create((sizeOfUrlReports / 5), 3); // Holds multiple values for any key, if a fileName(key) has many IDs(values) associated with it.
HashMultimap<String, Payload> hashesWithPayloads = HashMultimap.create((sizeOfUrlReports / 5), 3); // Holds multiple payloads for the same fileHash.
// The "Hash" part of the multimap helps with avoiding duplicate fileHashes.
for ( UrlReport urlReport : urlReports )
{
Payload payload = urlReport.getPayload();
if ( payload == null )
continue;
String fileLocation = payload.getLocation();
if ( fileLocation == null )
continue; // The full-text was not retrieved for this UrlReport.
// Query the payload-table FOR EACH RECORD to get the fileLocation of A PREVIOUS RECORD WITH THE SAME FILE-HASH.
// If no result is returned, then this record is not previously found, so go ahead and add it in the list of files to request from the worker.
// If a file-location IS returned (for this hash), then this file is already uploaded to the S3. Update the record to point to that file-location and do not request that file from the Worker.
String fileHash = payload.getHash();
if ( fileHash != null )
{
hashesWithPayloads.put(fileHash, payload); // Hold multiple payloads per fileHash.
// There are 2 cases, which contribute to that:
// 1) Different publication-IDs end up giving the same full-text-url, resulting in the same file. Those duplicates are not saved, but instead, the location, hash and size of the file is copied to the other payload.
// 2) Different publication-IDs end up giving different full-text-urls which point to the same file. Although very rare, in this case, the file is downloaded again by the Worker and has a different name.
// In either case, the duplicate file will not be transferred to the Controller, but in the 2nd one it takes up extra space, at least for some time.
// TODO - Implement a fileHash-check lagorithm in the Worker's side ("PublicationsRetriever"), to avoid keeping those files in storage.
} else // This should never happen..
logger.error("Payload: " + payload + " has a null fileHash!");
}// end-for
HashMultimap<String, Payload> hashesWithPayloads = getHashesWithPayloads(urlReports, sizeOfUrlReports); // Holds multiple payloads for the same fileHash.
Set<String> fileHashes = hashesWithPayloads.keySet();
int fileHashesSetSize = fileHashes.size(); // Get the size of the keysSet, instead of the whole multimap.
@ -150,32 +121,7 @@ public class FileUtils {
return UploadFullTextsResponse.successful_without_fulltexts; // It was handled, no error.
}
// Prepare the "fileHashListString" to be used inside the "getHashLocationsQuery". Create the following string-pattern:
// ("HASH_1", "HASH_2", ...)
int stringBuilderCapacity = ((fileHashesSetSize * 32) + (fileHashesSetSize -1) +2);
String getHashLocationsQuery = "select distinct `hash`, `location` from " + DatabaseConnector.databaseName + ".payload where `hash` in "
+ getQueryListString(new ArrayList<>(fileHashes), fileHashesSetSize, stringBuilderCapacity);
HashMap<String, String> hashLocationMap = new HashMap<>(fileHashesSetSize/2); // No multimap is needed since only one location is returned for each fileHash.
DatabaseConnector.databaseLock.lock(); // The execution uses the database.
try {
jdbcTemplate.query(getHashLocationsQuery, rs -> {
try { // For each of the 4 columns returned, do the following. The column-indexing starts from 1.
hashLocationMap.put(rs.getString(1), rs.getString(2));
} catch (SQLException sqle) {
logger.error("No value was able to be retrieved from one of the columns of row_" + rs.getRow(), sqle);
}
});
} catch (EmptyResultDataAccessException erdae) {
logger.warn("No previously-found hash-locations where found for assignments_" + assignmentsBatchCounter);
} catch (Exception e) {
logger.error("Unexpected error when checking for already-found file-hashes!", e);
// We will continue with storing the files, we do not want to lose them.
} finally {
DatabaseConnector.databaseLock.unlock();
}
HashMap<String, String> hashLocationMap = getHashLocationMap(fileHashes, fileHashesSetSize, assignmentsBatchCounter);
for ( String fileHash : fileHashes )
{
@ -319,6 +265,76 @@ public class FileUtils {
}
public HashMultimap<String, Payload> getHashesWithPayloads(List<UrlReport> urlReports, int sizeOfUrlReports)
{
HashMultimap<String, Payload> hashesWithPayloads = HashMultimap.create((sizeOfUrlReports / 5), 3); // Holds multiple payloads for the same fileHash.
// The "Hash" part of the multimap helps with avoiding duplicate fileHashes.
for ( UrlReport urlReport : urlReports )
{
Payload payload = urlReport.getPayload();
if ( payload == null )
continue;
String fileLocation = payload.getLocation();
if ( fileLocation == null )
continue; // The full-text was not retrieved for this UrlReport.
// Query the payload-table FOR EACH RECORD to get the fileLocation of A PREVIOUS RECORD WITH THE SAME FILE-HASH.
// If no result is returned, then this record is not previously found, so go ahead and add it in the list of files to request from the worker.
// If a file-location IS returned (for this hash), then this file is already uploaded to the S3. Update the record to point to that file-location and do not request that file from the Worker.
String fileHash = payload.getHash();
if ( fileHash != null )
{
hashesWithPayloads.put(fileHash, payload); // Hold multiple payloads per fileHash.
// There are 2 cases, which contribute to that:
// 1) Different publication-IDs end up giving the same full-text-url, resulting in the same file. Those duplicates are not saved, but instead, the location, hash and size of the file is copied to the other payload.
// 2) Different publication-IDs end up giving different full-text-urls which point to the same file. Although very rare, in this case, the file is downloaded again by the Worker and has a different name.
// In either case, the duplicate file will not be transferred to the Controller, but in the 2nd one it takes up extra space, at least for some time.
// TODO - Implement a fileHash-check algorithm in the Worker's side ("PublicationsRetriever"), to avoid keeping those files in storage.
} else // This should never happen..
logger.error("Payload: " + payload + " has a null fileHash!");
}// end-for
return hashesWithPayloads;
}
public HashMap<String, String> getHashLocationMap(Set<String> fileHashes, int fileHashesSetSize, long assignmentsBatchCounter)
{
// Prepare the "fileHashListString" to be used inside the "getHashLocationsQuery". Create the following string-pattern:
// ("HASH_1", "HASH_2", ...)
int stringBuilderCapacity = ((fileHashesSetSize * 32) + (fileHashesSetSize -1) +2);
String getHashLocationsQuery = "select distinct `hash`, `location` from " + DatabaseConnector.databaseName + ".payload where `hash` in "
+ getQueryListString(new ArrayList<>(fileHashes), fileHashesSetSize, stringBuilderCapacity);
HashMap<String, String> hashLocationMap = new HashMap<>(fileHashesSetSize/2); // No multimap is needed since only one location is returned for each fileHash.
DatabaseConnector.databaseLock.lock(); // The execution uses the database.
try {
jdbcTemplate.query(getHashLocationsQuery, rs -> {
try { // For each of the 4 columns returned, do the following. The column-indexing starts from 1.
hashLocationMap.put(rs.getString(1), rs.getString(2));
} catch (SQLException sqle) {
logger.error("No value was able to be retrieved from one of the columns of row_" + rs.getRow(), sqle);
}
});
} catch (EmptyResultDataAccessException erdae) {
logger.warn("No previously-found hash-locations where found for assignments_" + assignmentsBatchCounter);
} catch (Exception e) {
logger.error("Unexpected error when checking for already-found file-hashes!", e);
// We will continue with storing the files, we do not want to lose them.
} finally {
DatabaseConnector.databaseLock.unlock();
}
return hashLocationMap;
}
private boolean getAndSaveFullTextBatch(List<String> fileNamesForCurBatch, String baseUrl, long assignmentsBatchCounter, int batchCounter, int numOfBatches,
String zstdFileFullPath, String workerId) throws RuntimeException
{