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- In test-environment mode, check for already existing file-hashes only in the "payload_aggregated" table, instead of the whole "payload" view. This way the investigation for false-positive docUrls is easier, as we avoid checking against the millions of "legacy" payloads. 

- Improve performance in production, by not creating the string objects for "trace"-logs.
This commit is contained in:
Lampros Smyrnaios 2023-05-15 12:44:16 +03:00
parent 8381df70c6
commit 9412391903
5 changed files with 27 additions and 15 deletions
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5
src/main/java/eu/openaire/urls_controller/controllers/StatsController.java
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@ -58,7 +58,10 @@ public class StatsController {
final String getPayloadsNumberForDatasourceQuery =
"select count(p.id) from " + ImpalaConnector.databaseName + ".payload p\n" +
" join " + ImpalaConnector.databaseName + ".publication pu on pu.id=p.id and pu.datasourceid=\"" + datasourceId + "\"";
logger.trace("getPayloadsNumberForDatasourceQuery:\n" + getPayloadsNumberForDatasourceQuery);
if ( logger.isTraceEnabled() )
logger.trace("getPayloadsNumberForDatasourceQuery:\n" + getPayloadsNumberForDatasourceQuery);
return statsService.getNumberOfPayloads(getPayloadsNumberForDatasourceQuery, "payloads related to datasourceId \"" + datasourceId + "\"");
}

15
src/main/java/eu/openaire/urls_controller/services/FullTextsServiceImpl.java
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@ -100,7 +100,8 @@ public class FullTextsServiceImpl implements FullTextsService {
return false;
}
logger.trace("fileLocations:\n" + fileLocations);
if ( logger.isTraceEnabled() )
logger.trace("fileLocations:\n" + fileLocations);
String localParquetDir = parquetFileUtils.parquetBaseLocalDirectoryPath + "bulk_import_" + provenance + File.separator + relativeBulkImportDir; // This ends with "/".
try {
@ -268,7 +269,9 @@ public class FullTextsServiceImpl implements FullTextsService {
// Construct the parquet file, upload it to HDFS and load them it in the "payload_bulk_import" table.
String parquetFileName = "payloads_" + segmentCounter + ".parquet";
String fullLocalParquetFilePath = localParquetDir + parquetFileName;
logger.trace("Going to write " + numOfPayloadRecords + " payload-records to the parquet file: " + fullLocalParquetFilePath); // DEBUG!
if ( logger.isTraceEnabled() )
logger.trace("Going to write " + numOfPayloadRecords + " payload-records to the parquet file: " + fullLocalParquetFilePath); // DEBUG!
if ( ! parquetFileUtils.writeToParquet(payloadRecords, ParquetFileUtils.payloadsSchema, fullLocalParquetFilePath) ) {
bulkImportReport.addEvent("Could not write the payload-records to the parquet-file: '" + parquetFileName + "'!");
@ -276,9 +279,9 @@ public class FullTextsServiceImpl implements FullTextsService {
// None of the files of this segment will be deleted, in any case.
return numOfFilesInSegment;
}
//logger.trace("Parquet file '" + parquetFileName + "' was created and filled."); // DEBUG!
logger.trace("Going to upload the parquet file: " + fullLocalParquetFilePath + " to HDFS."); // DEBUG!
if ( logger.isTraceEnabled() )
logger.trace("Going to upload the parquet file: " + fullLocalParquetFilePath + " to HDFS."); // DEBUG!
// Upload and insert the data to the "payload" Impala table. (no database-locking is required)
String errorMsg = parquetFileUtils.uploadParquetFileToHDFS(fullLocalParquetFilePath, parquetFileName, currentBulkImportHdfsDir);
@ -289,7 +292,8 @@ public class FullTextsServiceImpl implements FullTextsService {
return numOfFilesInSegment;
}
logger.trace("Going to load the data of parquet-file: \"" + parquetFileName + "\" to the database-table: \"payload_bulk_import\"."); // DEBUG!
if ( logger.isTraceEnabled() )
logger.trace("Going to load the data of parquet-file: \"" + parquetFileName + "\" to the database-table: \"payload_bulk_import\"."); // DEBUG!
ImpalaConnector.databaseLock.lock();
if ( !parquetFileUtils.loadParquetDataIntoTable((currentBulkImportHdfsDir + parquetFileName), "payload_bulk_import") ) {
@ -371,7 +375,6 @@ public class FullTextsServiceImpl implements FullTextsService {
// openaire id = <datasourcePrefix> + "::" + <md5(lowercase(arxivId))>
String openAireId = (datasourcePrefix + "::" + idMd5hash);
//logger.trace("openAireId: " + openAireId);
String s3Url = null;

5
src/main/java/eu/openaire/urls_controller/services/UrlsServiceImpl.java
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@ -68,7 +68,8 @@ public class UrlsServiceImpl implements UrlsService {
if ( bulkImportSources.isEmpty() )
return; // So the "excludedDatasourceIDsStringList" -code should be placed last in this Constructor-method.
logger.trace("BulkImportSources:\n" + bulkImportSources);
if ( logger.isTraceEnabled() )
logger.trace("BulkImportSources:\n" + bulkImportSources);
List<String> excludedIDs = new ArrayList<>();
for ( BulkImport.BulkImportSource source : bulkImportSources.values() ) {
@ -128,7 +129,7 @@ public class UrlsServiceImpl implements UrlsService {
// The "order by" in the end makes sure the older attempted records will be re-attempted after a long time.
logger.trace("findAssignmentsQuery:\n" + findAssignmentsQuery); // DEBUG!
//logger.trace("findAssignmentsQuery:\n" + findAssignmentsQuery); // DEBUG!
final String getAssignmentsQuery = "select * from " + ImpalaConnector.databaseName + ".current_assignment";

12
src/main/java/eu/openaire/urls_controller/util/FileUtils.java
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@ -58,8 +58,10 @@ public class FileUtils {
public static final String workingDir = System.getProperty("user.dir") + File.separator;
private boolean isTestEnvironment;
public FileUtils (@Value("${services.pdfaggregation.controller.baseFilesLocation}") String baseFilesLocation) {
public FileUtils (@Value("${services.pdfaggregation.controller.baseFilesLocation}") String baseFilesLocation, @Value("${services.pdfaggregation.controller.isTestEnvironment}") boolean isTestEnvironment) {
if ( !baseFilesLocation.endsWith(File.separator) )
baseFilesLocation += File.separator;
@ -67,6 +69,8 @@ public class FileUtils {
baseFilesLocation = workingDir + baseFilesLocation;
this.baseFilesLocation = baseFilesLocation;
this.isTestEnvironment = isTestEnvironment;
}
@ -139,7 +143,7 @@ public class FileUtils {
SetMultimap<String, Payload> allFileNamesWithPayloads = Multimaps.synchronizedSetMultimap(HashMultimap.create((urlReportsSize / 5), 3)); // Holds multiple values for any key, if a fileName(key) has many IDs(values) associated with it.
final String getFileLocationForHashQuery = "select `location` from " + ImpalaConnector.databaseName + ".payload where `hash` = ? limit 1";
final String getFileLocationForHashQuery = "select `location` from " + ImpalaConnector.databaseName + ".payload" + (isTestEnvironment ? "_aggregated" : "") + " where `hash` = ? limit 1";
final int[] hashArgType = new int[] {Types.VARCHAR};
List<Callable<Void>> callableTasks = new ArrayList<>(6);
@ -174,7 +178,8 @@ public class FileUtils {
if ( alreadyFoundFileLocation != null ) { // If the full-text of this record is already-found and uploaded.
payload.setLocation(alreadyFoundFileLocation); // Set the location to the older identical file, which was uploaded to S3. The other file-data is identical.
//logger.trace("The record with ID \"" + payload.getId() + "\" has an \"alreadyRetrieved\" file, with hash \"" + fileHash + "\" and location \"" + alreadyFoundFileLocation + "\"."); // DEBUG!
if ( logger.isTraceEnabled() )
logger.trace("The record with ID \"" + payload.getId() + "\" has an \"alreadyRetrieved\" file, with hash \"" + fileHash + "\" and location \"" + alreadyFoundFileLocation + "\"."); // DEBUG!
numFilesFoundFromPreviousAssignmentsBatches.incrementAndGet();
numFullTextsFound.incrementAndGet();
return null; // Do not request the file from the worker, it's already uploaded. Move on. The "location" will be filled my the "setFullTextForMultiplePayloads()" method, later.
@ -447,7 +452,6 @@ public class FileUtils {
logger.error("The retrieved \"datasourceId\" was \"null\" for file: " + fileName);
return null;
}
if ( hash == null ) {
logger.error("The retrieved \"hash\" was \"null\" for file: " + fileName);
return null;

5
src/main/java/eu/openaire/urls_controller/util/ParquetFileUtils.java
View File

@ -414,7 +414,7 @@ public class ParquetFileUtils {
conn.setInstanceFollowRedirects(true); // It is possible that the "location" was an intermediate one.
conn.connect();
// Write the parquet file.
// Upload the parquet file.
try ( BufferedInputStream inputS = new BufferedInputStream(Files.newInputStream(parquetFile.toPath()), FileUtils.tenMb);
BufferedOutputStream outS = new BufferedOutputStream(conn.getOutputStream(), FileUtils.tenMb) )
{
@ -604,7 +604,8 @@ public class ParquetFileUtils {
logger.error(errorMsg + "\n\n" + fileUtils.getMessageFromResponseBody(conn, true));
return false;
}
logger.trace("The Operation was successful for hdfs-op-url: " + hdfsOperationUrl + "\n" + fileUtils.getMessageFromResponseBody(conn, false));
if ( logger.isTraceEnabled() )
logger.trace("The Operation was successful for hdfs-op-url: " + hdfsOperationUrl + "\n" + fileUtils.getMessageFromResponseBody(conn, false));
} catch (Exception e) {
logger.error("", e);
return false;