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This is the implementation of the DataMiner service that integrates the WPS 52North in the D4Science Infrastructure.
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wps/pom.xml

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<project xmlns="http://maven.apache.org/POM/4.0.0"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<groupId>org.gcube.data-analysis</groupId>
<artifactId>wps</artifactId>
<version>1.1.8</version>
<name>WPS</name>
<description>A service implementing a WPS provider in the D4Science e-Infrastructure</description>
<parent>
<artifactId>maven-parent</artifactId>
<groupId>org.gcube.tools</groupId>
<version>1.1.0</version>
<relativePath />
</parent>
<packaging>war</packaging>
<scm>
<connection>scm:git:https://code-repo.d4science.org/gCubeSystem/${project.artifactId}.git</connection>
<developerConnection>scm:git:https://code-repo.d4science.org/gCubeSystem/${project.artifactId}.git</developerConnection>
<url>https://code-repo.d4science.org/gCubeSystem/${project.artifactId}</url>
</scm>
<properties>
<serviceName>DataMiner</serviceName>
<serviceClass>WPS</serviceClass>
<webappDirectory>${project.basedir}/src/main/webapp/WEB-INF</webappDirectory>
<distroDirectory>${project.basedir}/distro</distroDirectory>
<securityversion52n>2.2-M2</securityversion52n>
<geotools.version>17.0</geotools.version>
<apache.ode.version>1.3.3</apache.ode.version>
<apache.axis2.version>1.5.1</apache.axis2.version>
<n52version>3.6.3</n52version>
<jackson.version>2.8.11</jackson.version>
</properties>
<repositories>
<repository>
<id>n52-releases</id>
<name>52n Releases</name>
<url>https://52north.org/maven/repo/releases</url>
<releases>
<enabled>true</enabled>
</releases>
<snapshots>
<enabled>false</enabled>
</snapshots>
</repository>
<repository>
<id>Apache</id>
<name>Apache repository</name>
<url>https://repo1.maven.org/maven2</url>
</repository>
<repository>
<id>geotools</id>
<name>Geotools Repo</name>
<url>https://download.osgeo.org/webdav/geotools</url>
<releases>
<enabled>true</enabled>
</releases>
<snapshots>
<enabled>false</enabled>
</snapshots>
</repository>
<!--repository> <id>OpenGEO</id> <name>opengeo repository</name> <url>https://repo.boundlessgeo.com</url>
</repository -->
<repository>
<id>osgeo</id>
<url>https://nexus.d4science.org/nexus/content/repositories/osgeo/</url>
</repository>
<repository>
<id>GeoSolutions</id>
<url>https://nexus.d4science.org/nexus/content/repositories/geo-solutions/</url>
</repository>
</repositories>
<dependencyManagement>
<!-- Old solution <dependencies> <dependency> <groupId>org.gcube.distribution</groupId>
<artifactId>maven-smartgears-bom</artifactId> <version>2.1.0</version> <type>pom</type>
<scope>import</scope> </dependency> </dependencies> -->
<dependencies>
<dependency>
<groupId>org.gcube.distribution</groupId>
<artifactId>gcube-smartgears-bom</artifactId>
<version>2.1.0</version>
<type>pom</type>
<scope>import</scope>
</dependency>
</dependencies>
</dependencyManagement>
<dependencies>
<!-- https://mvnrepository.com/artifact/org.slf4j/log4j-over-slf4j -->
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>log4j-over-slf4j</artifactId>
<version>1.7.25</version>
</dependency>
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>jcl-over-slf4j</artifactId>
<version>1.7.25</version>
</dependency>
<dependency>
<groupId>org.gcube.dataanalysis</groupId>
<artifactId>dataminer</artifactId>
<version>[1.7.0-SNAPSHOT, 2.0.0-SNAPSHOT)</version>
<exclusions>
<exclusion>
<artifactId>commons-logging</artifactId>
<groupId>commons-logging</groupId>
</exclusion>
<exclusion>
<artifactId>log4j</artifactId>
<groupId>log4j</groupId>
</exclusion>
<exclusion>
<groupId>com.fasterxml.jackson.core</groupId>
<artifactId>jackson-core</artifactId>
</exclusion>
<exclusion>
<groupId>com.fasterxml.jackson.core</groupId>
<artifactId>jackson-annotations</artifactId>
</exclusion>
<exclusion>
<groupId>com.fasterxml.jackson.core</groupId>
<artifactId>jackson-databind</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>com.fasterxml.jackson.core</groupId>
<artifactId>jackson-annotations</artifactId>
<version>${jackson.version}</version>
</dependency>
<dependency>
<groupId>com.fasterxml.jackson.core</groupId>
<artifactId>jackson-core</artifactId>
<version>${jackson.version}</version>
</dependency>
<dependency>
<groupId>com.fasterxml.jackson.core</groupId>
<artifactId>jackson-databind</artifactId>
<version>${jackson.version}</version>
</dependency>
<dependency>
<groupId>org.geotools</groupId>
<artifactId>geotools</artifactId>
<version>${geotools.version}</version>
<type>pom</type>
<scope>import</scope>
</dependency>
<dependency>
<groupId>xerces</groupId>
<artifactId>xercesImpl</artifactId>
<version>2.11.0</version>
</dependency>
<dependency>
<groupId>org.gcube.core</groupId>
<artifactId>common-smartgears</artifactId>
<scope>provided</scope>
</dependency>
<dependency>
<groupId>org.gcube.core</groupId>
<artifactId>common-smartgears-app</artifactId>
</dependency>
<dependency>
<groupId>org.gcube.common</groupId>
<artifactId>common-authorization</artifactId>
<scope>provided</scope>
</dependency>
<dependency>
<groupId>org.gcube.core</groupId>
<artifactId>common-scope</artifactId>
<scope>provided</scope>
</dependency>
<!-- https://mvnrepository.com/artifact/xml-apis/xml-apis -->
<dependency>
<groupId>org.geotools</groupId>
<artifactId>gt-main</artifactId>
<version>${geotools.version}</version>
</dependency>
<dependency>
<groupId>org.geotools</groupId>
<artifactId>gt-arcgrid</artifactId>
<version>${geotools.version}</version>
</dependency>
<dependency>
<groupId>org.geotools.xsd</groupId>
<artifactId>gt-xsd-gml3</artifactId>
<version>${geotools.version}</version>
</dependency>
<dependency>
<groupId>org.geotools</groupId>
<artifactId>gt-coverage</artifactId>
<version>${geotools.version}</version>
</dependency>
<dependency>
<groupId>org.geotools</groupId>
<artifactId>gt-referencing</artifactId>
<version>${geotools.version}</version>
</dependency>
<dependency>
<groupId>org.geotools.xsd</groupId>
<artifactId>gt-xsd-core</artifactId>
<version>${geotools.version}</version>
</dependency>
<dependency>
<groupId>org.geotools.xsd</groupId>
<artifactId>gt-xsd-kml</artifactId>
<version>${geotools.version}</version>
</dependency>
<dependency>
<groupId>org.geotools</groupId>
<artifactId>gt-xml</artifactId>
<version>${geotools.version}</version>
</dependency>
<dependency>
<groupId>org.geotools</groupId>
<artifactId>gt-geotiff</artifactId>
<version>${geotools.version}</version>
</dependency>
<dependency>
<groupId>org.geotools</groupId>
<artifactId>gt-epsg-hsql</artifactId>
<version>${geotools.version}</version>
</dependency>
<dependency>
<groupId>org.geotools</groupId>
<artifactId>gt-shapefile</artifactId>
<version>${geotools.version}</version>
</dependency>
<dependency>
<groupId>org.geotools</groupId>
<artifactId>gt-opengis</artifactId>
<version>${geotools.version}</version>
</dependency>
<dependency>
<groupId>org.geotools</groupId>
<artifactId>gt-metadata</artifactId>
<version>${geotools.version}</version>
</dependency>
<dependency>
<groupId>org.geotools.xsd</groupId>
<artifactId>gt-xsd-gml2</artifactId>
<version>${geotools.version}</version>
</dependency>
<dependency>
<groupId>org.geotools</groupId>
<artifactId>gt-api</artifactId>
<version>${geotools.version}</version>
</dependency>
<dependency>
<groupId>org.geotools</groupId>
<artifactId>gt-geojson</artifactId>
<version>${geotools.version}</version>
</dependency>
<!-- END import geotools dependencies -->
<!-- START J2EE -->
<dependency>
<groupId>javax.servlet</groupId>
<artifactId>servlet-api</artifactId>
<version>2.5</version>
<scope>provided</scope>
</dependency>
<dependency>
<groupId>javax.servlet.jsp</groupId>
<artifactId>jsp-api</artifactId>
<scope>provided</scope>
<version>2.1</version>
</dependency>
<!-- END J2EE -->
<dependency>
<groupId>com.google.guava</groupId>
<artifactId>guava</artifactId>
<version>20.0</version>
</dependency>
<dependency>
<groupId>commons-collections</groupId>
<artifactId>commons-collections</artifactId>
<version>3.2</version>
</dependency>
<dependency>
<groupId>commons-codec</groupId>
<artifactId>commons-codec</artifactId>
<version>1.5</version>
</dependency>
<!--dependency> <groupId>commons-httpclient</groupId> <artifactId>commons-httpclient</artifactId>
<version>3.1</version> <exclusions> <exclusion> <artifactId>commons-logging</artifactId>
<groupId>commons-logging</groupId> </exclusion> </exclusions> </dependency -->
<dependency>
<groupId>commons-io</groupId>
<artifactId>commons-io</artifactId>
<!--<version>1.3.1</version> -->
<version>2.0</version>
</dependency>
<dependency>
<groupId>commons-lang</groupId>
<artifactId>commons-lang</artifactId>
<version>2.5</version>
</dependency>
<dependency>
<groupId>org.apache.httpcomponents</groupId>
<artifactId>httpclient</artifactId>
<version>4.2.1</version>
<scope>compile</scope>
<exclusions>
<exclusion>
<artifactId>commons-logging</artifactId>
<groupId>commons-logging</groupId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>org.apache.httpcomponents</groupId>
<artifactId>httpcore</artifactId>
<version>4.2.1</version>
</dependency>
<dependency>
<groupId>org.apache.derby</groupId>
<artifactId>derby</artifactId>
<version>10.2.2.0</version>
<scope>runtime</scope>
</dependency>
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-exec</artifactId>
<version>1.3</version>
</dependency>
<dependency>
<groupId>org.apache.neethi</groupId>
<artifactId>neethi</artifactId>
<version>2.0.4</version>
<exclusions>
<exclusion>
<artifactId>commons-logging</artifactId>
<groupId>commons-logging</groupId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>org.apache.woden</groupId>
<artifactId>woden-api</artifactId>
<version>1.0M8</version>
</dependency>
<dependency>
<groupId>org.apache.ws.security</groupId>
<artifactId>wss4j</artifactId>
<version>1.5.6</version>
<exclusions>
<exclusion>
<artifactId>bcprov-jdk14</artifactId>
<groupId>bouncycastle</groupId>
</exclusion>
<exclusion>
<artifactId>commons-logging</artifactId>
<groupId>commons-logging</groupId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>org.codehaus.woodstox</groupId>
<artifactId>wstx-asl</artifactId>
<version>4.0.6</version>
<exclusions>
<exclusion>
<artifactId>stax-api</artifactId>
<groupId>stax</groupId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>org.codehaus.woodstox</groupId>
<artifactId>woodstox-core-asl</artifactId>
<version>4.0.6</version>
<exclusions>
<exclusion>
<artifactId>stax-api</artifactId>
<groupId>stax</groupId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>javax.xml.bind</groupId>
<artifactId>jsr173_api</artifactId>
<version>1.0</version>
</dependency>
<dependency>
<groupId>stax</groupId>
<artifactId>stax-api</artifactId>
<version>1.0.1</version>
</dependency>
<dependency>
<groupId>net.java.dev.stax-utils</groupId>
<artifactId>stax-utils</artifactId>
<version>20060502</version>
<exclusions>
<exclusion>
<artifactId>jsr173-ri</artifactId>
<groupId>com.bea.xml</groupId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>net.sourceforge.pjl-comp-filter</groupId>
<artifactId>pjl-comp-filter</artifactId>
<scope>runtime</scope>
<version>1.6.4</version>
<exclusions>
<exclusion>
<artifactId>commons-logging</artifactId>
<groupId>commons-logging</groupId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>joda-time</groupId>
<artifactId>joda-time</artifactId>
<version>2.2</version>
</dependency>
<dependency>
<groupId>edu.umn.gis</groupId>
<artifactId>mapscript</artifactId>
<version>6.0.3</version>
</dependency>
<dependency>
<groupId>org.n52.wps</groupId>
<artifactId>52n-wps-io-geotools</artifactId>
<version>${n52version}</version>
</dependency>
<dependency>
<groupId>org.n52.wps</groupId>
<artifactId>52n-wps-algorithm-geotools</artifactId>
<version>${n52version}</version>
<exclusions>
<exclusion>
<groupId>org.n52.wps</groupId>
<artifactId>52n-wps-algorithm</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>org.n52.wps</groupId>
<artifactId>52n-wps-commons</artifactId>
<version>${n52version}</version>
</dependency>
<dependency>
<groupId>org.n52.wps</groupId>
<artifactId>52n-wps-commons</artifactId>
<classifier>tests</classifier>
<version>${n52version}</version>
</dependency>
<dependency>
<groupId>org.n52.wps</groupId>
<artifactId>52n-wps-io</artifactId>
<version>${n52version}</version>
</dependency>
<dependency>
<groupId>org.n52.wps</groupId>
<artifactId>52n-wps-io</artifactId>
<classifier>tests</classifier>
<version>${n52version}</version>
</dependency>
<dependency>
<groupId>org.n52.wps</groupId>
<artifactId>52n-wps-io-impl</artifactId>
<version>${n52version}</version>
</dependency>
<dependency>
<groupId>org.gcube.dataanalysis</groupId>
<artifactId>52n-wps-server-gcube</artifactId>
<version>[3.6.0, 3.7.0-SNAPSHOT)</version>
</dependency>
<dependency>
<groupId>org.gcube.dataanalysis</groupId>
<artifactId>52n-wps-algorithm-gcube</artifactId>
<version>[3.6.2, 3.7.0-SNAPSHOT)</version>
</dependency>
<dependency>
<groupId>org.n52.wps</groupId>
<artifactId>52n-wps-algorithm-impl</artifactId>
<version>${n52version}</version>
<exclusions>
<exclusion>
<groupId>org.n52.wps</groupId>
<artifactId>52n-wps-algorithm</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>org.n52.wps</groupId>
<artifactId>52n-wps-database</artifactId>
<version>${n52version}</version>
</dependency>
<dependency>
<groupId>org.n52.wps</groupId>
<artifactId>52n-wps-client-lib</artifactId>
<version>${n52version}</version>
</dependency>
<dependency>
<groupId>org.n52.wps</groupId>
<artifactId>52n-wps-sextante</artifactId>
<version>${n52version}</version>
<exclusions>
<exclusion>
<artifactId>52n-wps-algorithm</artifactId>
<groupId>org.n52.wps</groupId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>org.n52.wps</groupId>
<artifactId>52n-wps-grass</artifactId>
<version>${n52version}</version>
<exclusions>
<exclusion>
<groupId>org.n52.wps</groupId>
<artifactId>52n-wps-algorithm</artifactId>
</exclusion>
<exclusion>
<groupId>org.n52.wps</groupId>
<artifactId>52n-wps-server</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>org.n52.wps</groupId>
<artifactId>52n-wps-webadmin</artifactId>
<version>${n52version}</version>
</dependency>
<dependency>
<groupId>org.n52.wps</groupId>
<artifactId>52n-wps-ags</artifactId>
<version>${n52version}</version>
<exclusions>
<exclusion>
<artifactId>52n-wps-algorithm</artifactId>
<groupId>org.n52.wps</groupId>
</exclusion>
<exclusion>
<groupId>org.n52.wps</groupId>
<artifactId>52n-wps-server</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>org.n52.wps</groupId>
<artifactId>52n-wps-r</artifactId>
<version>${n52version}</version>
<exclusions>
<exclusion>
<groupId>org.n52.wps</groupId>
<artifactId>52n-wps-algorithm</artifactId>
</exclusion>
<exclusion>
<groupId>org.n52.wps</groupId>
<artifactId>52n-wps-server</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>org.n52.wps</groupId>
<artifactId>52n-wps-mc</artifactId>
<version>${n52version}</version>
<exclusions>
<exclusion>
<artifactId>52n-wps-algorithm</artifactId>
<groupId>org.n52.wps</groupId>
</exclusion>
<exclusion>
<artifactId>abdera-bundle</artifactId>
<groupId>org.apache.abdera</groupId>
</exclusion>
<exclusion>
<groupId>com.fasterxml.jackson.core</groupId>
<artifactId>jackson-core</artifactId>
</exclusion>
<exclusion>
<groupId>com.fasterxml.jackson.core</groupId>
<artifactId>jackson-annotations</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>org.n52.wps</groupId>
<artifactId>52n-wps-config</artifactId>
<version>1.2.1</version>
<exclusions>
<exclusion>
<groupId>org.n52.wps</groupId>
<artifactId>52n-xml-wps-v100</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>org.n52.wps</groupId>
<artifactId>52n-wps-ags-workspace</artifactId>
<version>10.0.2</version>
</dependency>
<dependency>
<groupId>org.n52.sensorweb</groupId>
<artifactId>52n-xml-wps-v100</artifactId>
<version>2.1.0</version>
</dependency>
<dependency>
<groupId>org.n52.security</groupId>
<artifactId>52n-security-config</artifactId>
<version>2.2-M2</version>
<scope>compile</scope>
<exclusions>
<exclusion>
<artifactId>commons-logging</artifactId>
<groupId>commons-logging</groupId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>org.n52.security</groupId>
<artifactId>52n-security-authentication</artifactId>
<version>2.2-M2</version>
<scope>compile</scope>
<exclusions>
<exclusion>
<artifactId>commons-logging</artifactId>
<groupId>commons-logging</groupId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>org.n52.security</groupId>
<artifactId>52n-security-authn-web</artifactId>
<version>2.2-M2</version>
<scope>compile</scope>
<exclusions>
<exclusion>
<artifactId>commons-logging</artifactId>
<groupId>commons-logging</groupId>
</exclusion>
</exclusions>
</dependency>
<!-- START Sextante dependencies -->
<dependency>
<groupId>es.unex.sextante</groupId>
<artifactId>sextante</artifactId>
<version>1.0</version>
</dependency>
<dependency>
<groupId>es.unex.sextante</groupId>
<artifactId>sextante_gui</artifactId>
<version>1.0</version>
</dependency>
<dependency>
<groupId>es.unex.sextante</groupId>
<artifactId>sextante_algorithms</artifactId>
<version>1.0</version>
</dependency>
<dependency>
<groupId>es.unex.sextante</groupId>
<artifactId>libMath</artifactId>
<version>1.0</version>
</dependency>
<dependency>
<groupId>es.unex.sextante</groupId>
<artifactId>sextante_gt27_bindings</artifactId>
<version>1.0.1</version>
</dependency>
<dependency>
<groupId>org.beanshell</groupId>
<artifactId>bsh</artifactId>
<version>2.0b4</version>
</dependency>
<dependency>
<groupId>jfree</groupId>
<artifactId>jfreechart</artifactId>
<version>1.0.13</version>
</dependency>
<dependency>
<groupId>trove</groupId>
<artifactId>trove</artifactId>
<version>1.0.2</version>
</dependency>
<dependency>
<groupId>net.sf.kxml</groupId>
<artifactId>kxml2</artifactId>
<version>2.2.2</version>
</dependency>
<dependency>
<groupId>jep</groupId>
<artifactId>jep</artifactId>
<version>2.24</version>
</dependency>
<!-- END Sexttante dependencies -->
<dependency>
<groupId>org.apache.ode</groupId>
<artifactId>ode-axis2</artifactId>
<version>${apache.ode.version}</version>
</dependency>
<dependency>
<groupId>org.apache.ode</groupId>
<artifactId>ode-utils</artifactId>
<version>${apache.ode.version}</version>
</dependency>
<!-- START R dependencies -->
<dependency>
<groupId>org.rosuda.REngine</groupId>
<artifactId>Rserve</artifactId>
<version>1.8.1</version>
</dependency>
<!-- <dependency> -->
<!-- <groupId>org.rosuda</groupId> -->
<!-- <artifactId>RserveEngine</artifactId> -->
<!-- <version>0.6-8</version> -->
<!-- </dependency> -->
<!-- END R dependencies -->
<dependency>
<groupId>javax.servlet</groupId>
<artifactId>jstl</artifactId>
<version>1.2</version>
</dependency>
<!-- https://mvnrepository.com/artifact/ch.qos.logback/logback-classic -->
<dependency>
<groupId>ch.qos.logback</groupId>
<artifactId>logback-classic</artifactId>
</dependency>
<dependency>
<groupId>com.thetransactioncompany</groupId>
<artifactId>cors-filter</artifactId>
<version>1.9.3</version>
</dependency>
</dependencies>
<build>
<finalName>${artifactId}</finalName>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-war-plugin</artifactId>
<configuration>
<warName>wps</warName>
<failOnMissingWebXml>false</failOnMissingWebXml>
<includeEmptyDirectories>true</includeEmptyDirectories> <!-- since 2.4 -->
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-resources-plugin</artifactId>
<version>2.6</version>
<executions>
<execution>
<id>copy-profile</id>
<goals>
<goal>copy-resources</goal>
</goals>
<phase>process-resources</phase>
<configuration>
<outputDirectory>${webappDirectory}</outputDirectory>
<resources>
<resource>
<directory>${project.basedir}</directory>
<filtering>true</filtering>
<excludes>
<exclude>src</exclude>
</excludes>
<includes>
<include>LICENSE.md</include>
<include>README.md</include>
<include>CHANGELOG.md</include>
<include>gcube-app.xml</include>
<include>changelog.xml</include>
<include>profile.xml</include>
</includes>
</resource>
</resources>
</configuration>
</execution>
</executions>
</plugin>
</plugins>
</build>
</project>