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git-svn-id: https://svn.d4science.research-infrastructures.eu/gcube/trunk/data-analysis/wps@157423 82a268e6-3cf1-43bd-a215-b396298e98cf

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feature/23107
Lucio Lelii 7 years ago
parent e0af8b8a4f
commit ae08deb19f
2 changed files with 31 additions and 76 deletions
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105
src/main/java/org/gcube/data/analysis/wps/GetCapabilitiesBuilder.java
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@ -1,7 +1,6 @@
package org.gcube.data.analysis.wps;
import java.io.InputStream;
import java.util.HashMap;
import java.util.HashSet;
import java.util.LinkedHashMap;
import java.util.List;
@ -11,7 +10,7 @@ import java.util.Set;
import org.apache.commons.io.IOUtils;
import org.gcube.common.scope.api.ScopeProvider;
import org.gcube.data.analysis.wps.repository.GcubeAlgorithmRepository;
import org.gcube.dataanalysis.ecoengine.processing.factories.ProcessorsFactory;
import org.gcube.dataanalysis.wps.statisticalmanager.synchserver.algorithms.AlgorithmClassification;
import org.gcube.dataanalysis.wps.statisticalmanager.synchserver.infrastructure.InfrastructureDialoguer;
import org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mapping.ConfigurationManager;
import org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mapping.TokenManager;
@ -21,43 +20,14 @@ import org.slf4j.LoggerFactory;
public class GetCapabilitiesBuilder {
public static String processString = "<wps:Process wps:processVersion=\"1.1.0\">\n\t<ows:Identifier>#CLASS#</ows:Identifier>\n\t<ows:Title>#TITLE#</ows:Title>\n</wps:Process>";
public static final String processString = "<wps:Process wps:processVersion=\"1.1.0\">\n\t<ows:Identifier>#CLASS#</ows:Identifier>\n\t<ows:Title>#TITLE#</ows:Title>\n</wps:Process>";
private static final Logger LOGGER= LoggerFactory.getLogger(GetCapabilitiesBuilder.class);
public String getClassification(String algorithmName, ConfigurationManager configManager) throws Exception{
//get algorithms classification:
LOGGER.debug("Searching for a classification of "+algorithmName);
HashMap<String, List<String>> algorithmsClassification = ProcessorsFactory.getAllFeaturesUser(configManager.getConfig());
String rightClassification = "Others";
for (String classification:algorithmsClassification.keySet()){
List<String> algorithms = algorithmsClassification.get(classification);
if (algorithms.contains(algorithmName)){
LOGGER.debug("Found classification"+classification);
return classification;
}
}
LOGGER.debug("No classification found for "+algorithmName);
return rightClassification;
}
public String buildGetCapabilities(Map<String, String[]> parameters) throws Exception {
LinkedHashMap<String, Object> basicInputs = new LinkedHashMap<String, Object>();
//DONE get scope and username from SmartGears to build the get capabilities
/* OLD CODE
if (parameters != null) {
if (parameters.get(ConfigurationManager.scopeParameter) != null)
basicInputs.put(ConfigurationManager.scopeParameter, parameters.get(ConfigurationManager.scopeParameter)[0]);
if (parameters.get(ConfigurationManager.usernameParameter) != null)
basicInputs.put(ConfigurationManager.usernameParameter, parameters.get(ConfigurationManager.usernameParameter)[0]);
} else {// case for testing purposes only
if (AbstractEcologicalEngineMapper.simulationMode){
basicInputs.put(ConfigurationManager.scopeParameter, ConfigurationManager.defaultScope);
basicInputs.put(ConfigurationManager.usernameParameter, ConfigurationManager.defaultUsername);
}
}
*/
ConfigurationManager configManager = new ConfigurationManager();
TokenManager tokenm = new TokenManager();
tokenm.getCredentials();
@ -67,63 +37,50 @@ public class GetCapabilitiesBuilder {
basicInputs.put(ConfigurationManager.scopeParameter, scope);
basicInputs.put(ConfigurationManager.usernameParameter, username);
basicInputs.put(ConfigurationManager.tokenParameter, token);
configManager.configAlgorithmEnvironment(basicInputs);
LOGGER.debug("Initializing Capabilities Skeleton in scope " + configManager.getScope() + " with user " + configManager.getUsername());
InputStream is = this.getClass().getClassLoader().getResourceAsStream("templates/wpsCapabilitiesSkeleton.xml");
String stringTemplate = IOUtils.toString(is, "UTF-8");
//TODO: GET HOSTNAME AND PORT from container
String host = WPSConfig.getInstance().getWPSConfig().getServer().getHostname();
String port = WPSConfig.getInstance().getWPSConfig().getServer().getHostport();
stringTemplate = stringTemplate.replace("#HOST#", host).replace("#PORT#", port);
LOGGER.debug("Host: " + host + " Port: " + port);
LinkedHashMap<String, String> allalgorithms = new LinkedHashMap<String, String>();
/*
String packageS = "org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses";
List<Class<?>> classes = null;
try{
LOGGER.debug("Taking classes from /classes");
classes = GetCapabilitiesChecker.find(packageS);
}catch(Exception e){
LOGGER.debug("Taking classes from the Jar");
classes=GetCapabilitiesChecker.getClassesInSamePackageFromJar(packageS);
}*/
LOGGER.info("using classloader class {} ",Thread.currentThread().getContextClassLoader().getClass().getSimpleName());
Set<Class<?>> algorithmsClass = GcubeAlgorithmRepository.getAllAlgorithms();
LOGGER.info("class found with annotation Algorithm are {}",algorithmsClass.size());
for (Class<?> classfind : algorithmsClass) {
org.n52.wps.algorithm.annotation.Algorithm algorithmInfo = classfind.getAnnotation(org.n52.wps.algorithm.annotation.Algorithm.class);
if (algorithmInfo != null) {
LOGGER.debug("Retrieving local declared Algorithm: " + algorithmInfo.title());
allalgorithms.put(algorithmInfo.title(), classfind.getName());
}
}
LOGGER.debug("Getting algorithms from the infrastructure");
InfrastructureDialoguer dialoguer = new InfrastructureDialoguer(configManager.getScope());
List<String> algorithmsInScope = dialoguer.getAlgorithmsInScope();
LOGGER.debug("Found {} algorithms in scope {} ",algorithmsInScope.size() ,ScopeProvider.instance.get());
StringBuffer capabilities = new StringBuffer();
//TO eliminate duplicate coming from IS
Set<String> algorithmsSet = new HashSet<String>(algorithmsInScope);
for (String algorithmInScope : algorithmsSet ) {
String classAlgorithm = allalgorithms.get(algorithmInScope);
if (classAlgorithm != null) {
LOGGER.debug("Approving " + classAlgorithm + " to capabilities ");
String algorithmTitle = getClassification(algorithmInScope, configManager)+":"+algorithmInScope;
// String algorithmTitle = algorithmInScope;
capabilities.append(processString.replace("#TITLE#", algorithmTitle).replace("#CLASS#", classAlgorithm));
LOGGER.info("using classloader class {} ",Thread.currentThread().getContextClassLoader().getClass().getSimpleName());
Set<Class<?>> algorithmsClass = GcubeAlgorithmRepository.getAllAlgorithms();
LOGGER.info("class found with annotation Algorithm are {}",algorithmsClass.size());
for (Class<?> classfound : algorithmsClass) {
org.n52.wps.algorithm.annotation.Algorithm algorithmInfo = classfound.getAnnotation(org.n52.wps.algorithm.annotation.Algorithm.class);
if (algorithmInfo != null) {
LOGGER.debug("Retrieving local declared Algorithm: " + algorithmInfo.title());
String classification = "Others";
if (classfound.isAnnotationPresent(AlgorithmClassification.class))
classification = classfound.getAnnotation(AlgorithmClassification.class).value();
if (algorithmsSet.contains(algorithmInfo.title())){
String algorithmTitle = String.format("%s:%s", classification, algorithmInfo.title());
capabilities.append(processString.replace("#TITLE#", algorithmTitle).replace("#CLASS#", classfound.getName()));
}
}
}
stringTemplate = stringTemplate.replace("#PROCESSES#", capabilities.toString());
@ -131,6 +88,4 @@ public class GetCapabilitiesBuilder {
return stringTemplate;
}
}

2
src/main/webapp/WEB-INF/README
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@ -25,7 +25,7 @@ no. 654119), SoBigData (grant no. 654024);
Version
--------------------------------------------------
1.1.0-SNAPSHOT (2017-10-11)
1.1.0-SNAPSHOT (${maven.build.timestamp})
Please see the file named "changelog.xml" in this directory for the release notes.

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