146 lines
3.9 KiB
Java
146 lines
3.9 KiB
Java
package org.gcube.data.spd.wormsplugin;
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import static org.gcube.resources.discovery.icclient.ICFactory.clientFor;
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import static org.gcube.resources.discovery.icclient.ICFactory.queryFor;
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import java.util.List;
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import javax.xml.bind.JAXBException;
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import org.gcube.common.resources.gcore.ServiceEndpoint;
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import org.gcube.common.scope.api.ScopeProvider;
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import org.gcube.data.spd.model.binding.Bindings;
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import org.gcube.data.spd.model.exceptions.StreamException;
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import org.gcube.data.spd.model.products.TaxonomyItem;
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import org.gcube.data.spd.plugin.fwk.writers.ObjectWriter;
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import org.gcube.data.spd.wormsplugin.capabilities.ClassificationCapabilityImpl;
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import org.gcube.resources.discovery.client.api.DiscoveryClient;
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import org.gcube.resources.discovery.client.queries.api.SimpleQuery;
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public class TestClassification {
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public static void main(String[] args) throws Exception {
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SimpleQuery query = queryFor(ServiceEndpoint.class);
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query.addCondition("$resource/Profile/Category/text() eq 'BiodiversityRepository' and $resource/Profile/Name eq 'WoRMS' ");
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ScopeProvider.instance.set("/gcube/devsec");
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DiscoveryClient<ServiceEndpoint> client = clientFor(ServiceEndpoint.class);
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List<ServiceEndpoint> resources = client.submit(query);
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System.out.println(resources.size());
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WormsPlugin a = new WormsPlugin();
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if(resources.size() != 0) {
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try {
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a.initialize(resources.get(0));
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} catch (Exception e) {
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e.printStackTrace();
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}
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}
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/*WormsPlugin.binding = (aphia.v1_0.AphiaNameServiceBindingStub)
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new aphia.v1_0.AphiaNameServiceLocator().getAphiaNameServicePort();
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*/
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TaxonomyItem item = a.getClassificationInterface().retrieveTaxonById("1");
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System.out.println("id: "+ item.getId() + " : " + item.getScientificName() + " - rank: " + item.getRank());
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// // Test retrieveTaxaByScientificName
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a.getClassificationInterface().searchByScientificName("biota", new ObjectWriter<TaxonomyItem>() {
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@Override
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public boolean isAlive() {
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// TODO Auto-generated method stub
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return true;
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}
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@Override
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public boolean write(TaxonomyItem t) {
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// System.out.println(t.getId() + " " + t.getScientificName() );
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// System.out.println("SIZE " + t.getProperties().size());
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// for ( ElementProperty ele : t.getProperties()) {
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// System.out.println( ele.getName() + " - " + ele.getValue());
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// }
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while (t != null){
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System.out.println(t.getId() + " " + t.getScientificName()+ " - rank: " + t.getRank());
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System.out.println(t.getCitation());
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System.out.println("**** " + t.getCredits());
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t = t.getParent();
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}
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return false;
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}
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@Override
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public boolean write(StreamException arg0) {
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// TODO Auto-generated method stub
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return false;
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}
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} );
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//System.out.println(b.retrieveTaxonChildrenByTaxonId("274299"));
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//
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// LocalWrapper<String> wrap = new LocalWrapper<String>();
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// wrap.add("273810");
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// wrap.add("163034");
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// wrap.add("305833");
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// wrap.add("154712");
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// wrap.add("323133");
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// LocalReader<String> list = new LocalReader<String>(wrap);
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// b.retrieveTaxonByIds(list, new Writer<TaxonomyItem>(null) {
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//
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// public boolean put(TaxonomyItem t) {
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// System.out.println(t.getId());
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// System.out.println(t);
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// return false;
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// }
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//
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// public void close() {
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// //
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//
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// }
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// } );
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//
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//
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//
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//
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////
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// b.getSynonymnsById(new ObjectWriter<TaxonomyItem>() {
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//
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// public boolean put(TaxonomyItem ri) {
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//// System.out.println(ri.toString());
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// System.out.println(ri.getScientificName());
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// return true;
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// }
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//
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// public void close() {
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// System.out.println("************************");
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// }
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//
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// @Override
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// public boolean put(StreamException arg0) {
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// // TODO Auto-generated method stub
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// return false;
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// }
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// }, "319969"
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// );
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// }
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// Test retrieveTaxonChildsByTaxonId
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// System.out.println(b.retrieveTaxonChildsByTaxonId(126062+""));
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}
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}
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