git-svn-id: http://svn.research-infrastructures.eu/public/d4science/gcube/trunk/vre-management/VREModeler@7461 82a268e6-3cf1-43bd-a215-b396298e98cf
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@ -2,7 +2,6 @@
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<classpath>
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<classpathentry kind="src" path="src"/>
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<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER"/>
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<classpathentry kind="con" path="org.eclipse.jdt.USER_LIBRARY/GCORELIBS"/>
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<classpathentry kind="lib" path="/home/lucio/gCore/lib/org.gcube.vremanagement.vremodeler.stubs.jar"/>
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<classpathentry kind="con" path="org.eclipse.jdt.USER_LIBRARY/GCORELIB"/>
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<classpathentry kind="output" path="bin"/>
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</classpath>
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@ -11,6 +11,7 @@ import java.sql.Statement;
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import java.util.List;
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import org.gcube.common.core.faults.GCUBEFault;
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import org.gcube.common.core.utils.logging.GCUBELog;
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import org.gcube.vremanagement.vremodeler.impl.util.Listable;
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/**
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*
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@ -72,8 +73,52 @@ public class DBInterface {
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}
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public static synchronized void insertIntoListable(String table, List<? extends Listable> values) throws GCUBEFault {
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if (values==null) throw new GCUBEFault();
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Statement st = null;
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try{
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st = conn.createStatement(); // statement objects can be reused with
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}catch(SQLException e){//logger.error("error creating SQL statement");
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throw new GCUBEFault(e);}
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StringBuffer insertQuery;
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for (Listable row: values)
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{
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insertQuery=new StringBuffer();
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insertQuery.append("INSERT INTO ").append(table.toUpperCase()).append(" VALUES(");
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try{
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for(String value: row.getAsStringList()){
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insertQuery.append("'").append(value.replaceAll("'", " ")).append("',");
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}
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insertQuery.deleteCharAt(insertQuery.length()-1).append(");");
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logger.trace("Query for inserting in hsqldb "+insertQuery);
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st.executeUpdate(insertQuery.toString()); // run the query
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}catch(SQLException e){logger.error("HSQLDB ERROR: Problem inserting data "+e.getMessage()+" -- "+ insertQuery);
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e.printStackTrace();
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}
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catch(Exception e){
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logger.error("VDLModelService error: Problem inserting data "+e.getMessage());
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e.printStackTrace();
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}
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}
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try{
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st.close();
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}catch(SQLException e){logger.error("error closing SQL statement");
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throw new GCUBEFault(e);}
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}
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/**
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*
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* @param table
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@ -3,9 +3,13 @@ package org.gcube.vremanagement.vremodeler.db;
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import java.rmi.RemoteException;
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import java.sql.SQLException;
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import java.util.ArrayList;
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import java.util.Arrays;
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import java.util.Hashtable;
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import java.util.List;
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/*import org.apache.axis.components.uuid.UUIDGen;
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import org.apache.axis.components.uuid.UUIDGenFactory;*/
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import org.apache.axis.components.uuid.UUIDGen;
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import org.apache.axis.components.uuid.UUIDGenFactory;
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import org.apache.axis.message.addressing.EndpointReferenceType;
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import org.gcube.common.core.contexts.GHNContext;
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import org.gcube.common.core.faults.GCUBEFault;
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@ -24,6 +28,8 @@ import org.gcube.common.core.resources.GCUBERunningInstance;
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import org.gcube.common.core.resources.GCUBEService;
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import org.gcube.common.core.scope.GCUBEScope;
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import org.gcube.common.core.utils.logging.GCUBELog;
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import org.gcube.vremanagement.vremodeler.impl.util.MFRelationNative;
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import org.gcube.vremanagement.vremodeler.impl.util.MetadataFormat;
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/**
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*
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@ -36,6 +42,8 @@ public class IStoDBUtil {
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private static GCUBELog logger = new GCUBELog(IStoDBUtil.class.getName());
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private static UUIDGen uuidMFGEN= UUIDGenFactory.getUUIDGen();
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private static ISClient queryClient;
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/**
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* Initialize all database tables
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@ -217,157 +225,49 @@ public class IStoDBUtil {
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//preparing collectionList to insert
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//table declaration:
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//MDCOLLECTION(ID VARCHAR NOT NULL PRIMARY KEY,NAME VARCHAR,DESCRIPTION VARCHAR,RELATEDCOLLECTIONID VARCHAR NOT NULL)
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String uuid;
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MetadataFormat mf;
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List<List<String>> values = new ArrayList<List<String>>(collectionList.size());
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List<String> row;
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List<MetadataFormat> metadataFormatList= new ArrayList<MetadataFormat>();
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List<MFRelationNative> nativeMetadataFormatList= new ArrayList<MFRelationNative>();
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for (GCUBEMCollection col: collectionList ){
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row= new ArrayList<String>(4);
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row.add(col.getID());
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row.add(col.getName());
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row.add(col.getDescription());
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row.add(col.getRelCollection().getCollectionID());
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values.add(row);
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//adding the native metadataformat
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uuid=uuidMFGEN.nextUUID();
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mf= new MetadataFormat(uuid, col.getMetaFormat().getName(), col.getMetaFormat().getSchemaURI(), col.getMetaFormat().getLanguage());
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if (!metadataFormatList.contains(mf)){
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metadataFormatList.add(mf);
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nativeMetadataFormatList.add(new MFRelationNative(col.getID(), mf.getId() ));
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}else nativeMetadataFormatList.add(new MFRelationNative(col.getID(), metadataFormatList.get(metadataFormatList.indexOf(mf)).getId()));
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}
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//insert the values in the database
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DBInterface.connect();
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DBInterface.InsertInto("mdcollection", values);
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DBInterface.insertIntoListable("mdformat", metadataFormatList );
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DBInterface.insertIntoListable("nativemdf", nativeMetadataFormatList);
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}
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}catch (SQLException e){logger.error("VDLModel: DB error "+e.getMessage());
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throw new GCUBEFault(e); }
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ArrayList<String[]> MDFormatArray=new ArrayList<String[]>();
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ArrayList<String[]> MDNativeArray=new ArrayList<String[]>();
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ArrayList<String[]> MDDerivableArray=new ArrayList<String[]>();
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String[][] resultsParsed= parseResults(results, "r");
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String uuid;
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String metadataFormatQuery;
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String[] singleNativeMDF;
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String[] singleDerivableMDF;
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for(String[] singleColl: resultsParsed)
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{
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//generate the uid for MetadataFormat
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uuid=uuidMFGEN.nextUUID();
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String existID;
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//retriving the metadataFormat for the current MDCollection
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metadataFormatQuery="for $MetadataFormat in collection(\"/db/Profiles/MetadataCollection\")//Document/Data/child::*[local-name()='Profile']/DILIGENTResource where $MetadataFormat/UniqueID/string() eq '"+singleColl[0]+"' return <r><id>"+uuid+"</id><Name>{$MetadataFormat/Profile/MetadataFormat/Name/string()}</Name><SchemaURI>{$MetadataFormat/Profile/MetadataFormat/SchemaURI/string()}</SchemaURI><lng>{$MetadataFormat/Profile/MetadataFormat/Language/string()}</lng></r>";
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results=makeQueryDIS(epr, cred, metadataFormatQuery);
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String[][] resultsMDFParsed= parseResults(results, "r");
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if((existID=ContainsControl(resultsMDFParsed[0], MDFormatArray))==null)
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{
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MDFormatArray.add(resultsMDFParsed[0]);
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existID=uuid;
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}
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//keep the CollectionID and the MDFID to insert into NAtiveMDF
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singleNativeMDF=new String[3];
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singleNativeMDF[0]=singleColl[0];
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singleNativeMDF[1]=existID;
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singleNativeMDF[2]=singleColl[3]; //i need it to evaluate doble results
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MDNativeArray.add(singleNativeMDF);
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/*
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//Retrive Derivable MDF
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if (brokerConnected){
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try{
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FindPossibleTransformationPrograms request= new FindPossibleTransformationPrograms();
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TPIOType tpin= TPIOType.fromParams("collection", resultsMDFParsed[0][3],resultsMDFParsed[0][1]+"="+resultsMDFParsed[0][2] , "");
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request.setInputFormat(tpin.toXMLString());
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request.setOutputFormat(null);
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FindPossibleTransformationProgramsResponse response=metadataBroker.findPossibleTransformationPrograms(request);
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String[] tp=response.getTransformationProgram();
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String[] parsedTP;
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logger.debug("VDLModel Derivable : "+tp.length);
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for(String singleTP: tp){
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try{
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logger.debug("MDF Derivable : Single tp is parsing ");
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parsedTP=ParseTP(singleTP);
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if (parsedTP!=null){
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String temp;
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//temp will contains the MDF id if it exists
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if((temp=ContainsControl(parsedTP, MDFormatArray))==null){
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logger.debug("MDF Derivable : not exist ");
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// if it doesn't exists, insert it into database else
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//add it only on DerivableMDF with MDFuid
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uuid=uuidMFGEN.nextUUID();
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parsedTP[0]=uuid;
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MDFormatArray.add(parsedTP);
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MDDerivableArray.add(new String[]{singleColl[0], uuid, "nothing"});
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}else{
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MDDerivableArray.add(new String[]{singleColl[0], temp , "nothing"});
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logger.debug("MDF Derivable : exist ");
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}
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}
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}catch(Exception e) {logger.error("error in Derivable MDF parsing "+e.getMessage()); e.printStackTrace();}
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}
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}catch (Exception e1){logger.error("error retreiving metadataBroker "+e1.getMessage());
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e1.printStackTrace();
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}
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}
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*/
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/*
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//trying to parse TransformationProgram from DIS-IC
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existID=null;
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String queryDerivableMDF="";
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try{
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queryDerivableMDF="for $tp in collection(\"/db/Profiles/TransformationProgram\")//Document/Data/child::*[local-name()='Profile']/DILIGENTResource where $tp/Profile/TransformationProgram/Input/Type/string() eq 'collection' and $tp/Profile/TransformationProgram/Input/Schema/string() eq '"+resultsMDFParsed[0][1]+"="+resultsMDFParsed[0][2]+"' and $tp/Profile/TransformationProgram/Output/Type/string() eq 'collection' return " +
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"<r><id>{$tp/UniqueID/string()}</id><SchemaName>{$tp/Profile/TransformationProgram/Output/Schema/string()}</SchemaName><lng>anylanguage</lng></r>";
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results=makeQueryDIS(epr, cred, queryDerivableMDF);
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String[][] resultsDerivableMDFParsed= parseResults(results, "r");
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for (String[] singleMDFDerived: resultsDerivableMDFParsed){
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try{
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String tpID=singleMDFDerived[0];
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uuid=uuidMFGEN.nextUUID();
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singleMDFDerived[0]=uuid;
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String[] parsedTP=ParseTP(singleMDFDerived);
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if((existID=ContainsControl(parsedTP, MDFormatArray))==null)
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{
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MDFormatArray.add(parsedTP);
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existID=uuid;
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}
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singleDerivableMDF=new String[4];
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singleDerivableMDF[0]=singleColl[0];
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singleDerivableMDF[1]=existID;
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singleDerivableMDF[2]=tpID;
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singleDerivableMDF[3]=singleColl[3];
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MDDerivableArray.add(singleDerivableMDF);
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}catch(Exception e1){//logger.error("VDLModel: error parsing derivable");
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e1.printStackTrace();}
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}
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}catch(Exception e){//logger.error("VDLModel: error retriving Derivable MDF for collection "+singleColl[0]);
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e.printStackTrace();}
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}
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//da cambiare (scandaloso)
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ArrayList<String[]> tempRemove= new ArrayList<String[]>();
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for(String[] tempDeriv:MDDerivableArray ){
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for (String[] tempNative: MDNativeArray){
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if (tempDeriv[3].compareTo(tempNative[2])==0 && (tempDeriv[1].compareTo(tempNative[1])==0)){
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tempRemove.add(tempDeriv);
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//logger.debug("removed Doubled value");
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}
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}
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}
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for (String[] toRemove:tempRemove ) MDDerivableArray.remove(toRemove);
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try{
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DBInterface.connect();
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DBInterface.InsertInto("mdcollection", resultsParsed, false);
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DBInterface.InsertInto("mdformat", MDFormatArray.toArray(new String[0][0]), false);
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DBInterface.InsertInto("nativemdf", MDNativeArray.toArray(new String[0][0]), true);
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DBInterface.InsertInto("derivablemdf",MDDerivableArray.toArray(new String[0][0]), true);
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}catch (SQLException e){//logger.error("error DB");
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e.printStackTrace(); throw new RemoteException(e.getMessage(),e); }
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*/
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}
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/**
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*
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@ -303,7 +303,7 @@ public class ModelerService {
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}
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return XMLUtil.PrepareMCFormatXML(null, null, null, selectedMetadataStructure);
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return XMLUtil.PrepareMCFormatXML(totalMF, resNative, resDerivable, selectedMetadataStructure);
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}
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