Updated Ambiguous
git-svn-id: https://svn.d4science.research-infrastructures.eu/gcube/trunk/portlets/user/tabular-data-gwt-service@98558 82a268e6-3cf1-43bd-a215-b396298e98cf
This commit is contained in:
parent
4f5a725a59
commit
d5b5e7088c
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@ -17,6 +17,7 @@ import org.gcube.portal.custom.scopemanager.scopehelper.ScopeHelper;
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import org.gcube.portlets.user.td.gwtservice.server.file.CSVFileUploadSession;
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import org.gcube.portlets.user.td.gwtservice.server.file.CodelistMappingFileUploadSession;
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import org.gcube.portlets.user.td.gwtservice.server.trservice.TRTasksManager;
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import org.gcube.portlets.user.td.gwtservice.shared.Constants;
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import org.gcube.portlets.user.td.gwtservice.shared.codelisthelper.CodelistMappingMonitor;
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import org.gcube.portlets.user.td.gwtservice.shared.codelisthelper.CodelistMappingSession;
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import org.gcube.portlets.user.td.gwtservice.shared.csv.CSVExportSession;
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@ -93,6 +94,8 @@ public class SessionUtil {
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if (username == null) {
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logger.warn("no user found in session, using test one");
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throw new TDGWTSessionExpiredException("Session Expired!");
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//Remove comment for Test
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/*
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username = Constants.DEFAULT_USER;
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String scope = Constants.DEFAULT_SCOPE;
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@ -984,14 +984,14 @@ public class TDGWTServiceImpl extends RemoteServiceServlet implements
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AuthorizationProvider.instance.set(new AuthorizationToken(
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aslSession.getUsername(), aslSession.getScope()));
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TabularDataService service = TabularDataServiceFactory.getService();
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logger.debug("getValidationColumns():[" + trId.toString()
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+ " columnName: " + columnName + "]");
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Table table = service.getTable(new TableId(Long.valueOf(trId
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.getTableId())));
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logger.debug("getValidationColumns() on Table: "+table.toString());
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logger.debug("getValidationColumns() on Table: " + table.toString());
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Column columnSource = table.getColumnByName(columnName);
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if (columnSource == null) {
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logger.error("Column not present on table");
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@ -1008,7 +1008,8 @@ public class TDGWTServiceImpl extends RemoteServiceServlet implements
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int i = 0;
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for (Column c : cols) {
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if (c.getColumnType() instanceof ValidationColumnType) {
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logger.debug("ValidationColumn present: [" +c.getColumnType()+" "+c.getLocalId()+"]");
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logger.debug("ValidationColumn present: ["
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+ c.getColumnType() + " " + c.getLocalId() + "]");
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if (c.contains(ValidationReferencesMetadata.class)) {
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logger.debug("ValidationReferencesMetadata present");
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ValidationReferencesMetadata validationReferenceMetadata = c
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@ -3158,7 +3159,7 @@ public class TDGWTServiceImpl extends RemoteServiceServlet implements
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AuthorizationProvider.instance.set(new AuthorizationToken(
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aslSession.getUsername(), aslSession.getScope()));
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TabularDataService service = TabularDataServiceFactory.getService();
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TabularResource tr = service
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.getTabularResource(new TabularResourceId(Long.valueOf(trId
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.getId())));
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@ -4999,7 +5000,15 @@ public class TDGWTServiceImpl extends RemoteServiceServlet implements
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TabularResource cloned = service.cloneTabularResource(serviceTR);
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logger.debug("Clone: " + cloned.toString());
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Table table = service.getLastTable(cloned.getId());
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if (table == null) {
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String report = "This tabular resource has not valid last table! (TR id="
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+ cloned.getId() + ")";
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logger.error(report);
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throw new TDGWTServiceException(report);
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}
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logger.debug("Last Table: " + table.toString());
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Table viewTable = null;
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if (table.contains(DatasetViewTableMetadata.class)) {
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@ -5011,6 +5020,8 @@ public class TDGWTServiceImpl extends RemoteServiceServlet implements
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} catch (Exception e) {
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logger.error("view table not found");
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}
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} else {
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logger.debug("No DatasetViewTableMeatadata found");
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}
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TRId trId;
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@ -6568,11 +6579,10 @@ public class TDGWTServiceImpl extends RemoteServiceServlet implements
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val.isValid(),
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ConditionCodeMap.mapConditionCode(val
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.getConditionCode()),
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val.getValidationColumn());
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val.getValidationColumn());
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validations.add(validation);
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i++;
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}
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InvocationS invocationS = null;
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if (job.getInvocation() != null) {
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@ -6656,7 +6666,7 @@ public class TDGWTServiceImpl extends RemoteServiceServlet implements
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"Error in invocation: Operation not supported");
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}
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Long id = Long.valueOf(editRowSession.getTrId().getId());
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TabularResourceId serviceTR = new TabularResourceId(id);
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logger.debug("OperationInvocation: \n" + invocation.toString());
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Task trTask = service.execute(invocation, serviceTR);
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@ -6823,7 +6833,6 @@ public class TDGWTServiceImpl extends RemoteServiceServlet implements
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}
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}
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@Override
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public void startTaskResubmit(TaskResubmitSession taskResubmitSession)
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throws TDGWTServiceException {
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@ -6972,7 +6981,6 @@ public class TDGWTServiceImpl extends RemoteServiceServlet implements
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}
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}
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@Override
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public void startTaskResume(TaskResumeSession taskResumeSession)
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throws TDGWTServiceException {
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@ -7120,7 +7128,6 @@ public class TDGWTServiceImpl extends RemoteServiceServlet implements
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}
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}
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@Override
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public void startExtractCodelist(
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ExtractCodelistSession extractCodelistSession)
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@ -7277,7 +7284,7 @@ public class TDGWTServiceImpl extends RemoteServiceServlet implements
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}
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}
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//TODO
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// TODO
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public void startSplitColumn(SplitColumnSession splitColumnSession,
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HttpSession session) throws TDGWTServiceException {
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try {
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@ -7703,15 +7710,13 @@ public class TDGWTServiceImpl extends RemoteServiceServlet implements
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HttpSession session = this.getThreadLocalRequest().getSession();
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if (session == null) {
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throw new TDGWTServiceException(
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"Session is null");
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throw new TDGWTServiceException("Session is null");
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}
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logger.debug("Session:" + session.getId());
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ASLSession aslSession = SessionUtil.getAslSession(session);
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if (aslSession == null) {
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throw new TDGWTServiceException(
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"ASLSession is null");
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throw new TDGWTServiceException("ASLSession is null");
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}
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String user = aslSession.getUsername();
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logger.debug("Session User:" + user);
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@ -7720,12 +7725,13 @@ public class TDGWTServiceImpl extends RemoteServiceServlet implements
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throw new TDGWTServiceException(
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"CodelistMappingSession is null");
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}
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logger.debug("StartCodelistMappingImport: "
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+ codelistMappingSession.toString());
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SessionUtil.setCodelistMappingSession(session,codelistMappingSession);
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SessionUtil.setCodelistMappingSession(session,
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codelistMappingSession);
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importCodelistMappingFileOnService(session, aslSession, user,
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codelistMappingSession);
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} catch (TDGWTSessionExpiredException e) {
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@ -8054,13 +8060,11 @@ public class TDGWTServiceImpl extends RemoteServiceServlet implements
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}
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}
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@Override
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public void startNormalization(NormalizationSession normalizationSession)
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throws TDGWTServiceException {
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try {
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HttpSession session = this.getThreadLocalRequest().getSession();
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HttpSession session = this.getThreadLocalRequest().getSession();
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SessionUtil.setNormalizationSession(session, normalizationSession);
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ASLSession aslSession = SessionUtil.getAslSession(session);
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if (normalizationSession == null) {
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@ -8074,8 +8078,8 @@ public class TDGWTServiceImpl extends RemoteServiceServlet implements
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aslSession.getUsername(), aslSession.getScope()));
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TabularDataService service = TabularDataServiceFactory.getService();
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OpExecution4Normalization opEx = new OpExecution4Normalization(service,
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normalizationSession);
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OpExecution4Normalization opEx = new OpExecution4Normalization(
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service, normalizationSession);
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OpExecutionDirector director = new OpExecutionDirector();
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director.setOperationExecutionBuilder(opEx);
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director.constructOperationExecution();
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@ -8090,7 +8094,8 @@ public class TDGWTServiceImpl extends RemoteServiceServlet implements
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TabularResourceId serviceTR = new TabularResourceId(id);
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logger.debug("OperationInvocation: \n" + invocation.toString());
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Task trTask = service.execute(invocation, serviceTR);
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logger.debug("Normalization start on service: TaskId " + trTask.getId());
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logger.debug("Normalization start on service: TaskId "
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+ trTask.getId());
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SessionUtil.setNormalizationTask(session, trTask);
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return;
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@ -8105,10 +8110,9 @@ public class TDGWTServiceImpl extends RemoteServiceServlet implements
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throw new TDGWTServiceException("Error in start normalization: "
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+ e.getLocalizedMessage());
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}
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}
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@Override
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public NormalizationMonitor getNormalizationMonitor()
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throws TDGWTServiceException {
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@ -8133,8 +8137,8 @@ public class TDGWTServiceImpl extends RemoteServiceServlet implements
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} else {
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logger.debug("Services TaskStatus: " + task.getStatus());
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normalizationMonitor
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.setStatus(TaskStateMap.map(task.getStatus()));
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normalizationMonitor.setStatus(TaskStateMap.map(task
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.getStatus()));
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TRId trId;
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TabResource tabResource;
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@ -8202,20 +8206,22 @@ public class TDGWTServiceImpl extends RemoteServiceServlet implements
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} catch (TDGWTSessionExpiredException e) {
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throw e;
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} catch (Throwable e) {
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logger.debug("Error in NormalizationMonitor: " + e.getLocalizedMessage());
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logger.debug("Error in NormalizationMonitor: "
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+ e.getLocalizedMessage());
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e.printStackTrace();
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throw new TDGWTServiceException("Error: " + e.getLocalizedMessage());
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}
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}
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@Override
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public void startDenormalization(DenormalizationSession denormalizationSession)
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public void startDenormalization(
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DenormalizationSession denormalizationSession)
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throws TDGWTServiceException {
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try {
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HttpSession session = this.getThreadLocalRequest().getSession();
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SessionUtil.setDenormalizationSession(session, denormalizationSession);
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HttpSession session = this.getThreadLocalRequest().getSession();
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SessionUtil.setDenormalizationSession(session,
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denormalizationSession);
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ASLSession aslSession = SessionUtil.getAslSession(session);
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if (denormalizationSession == null) {
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logger.error("DenormalizationSession is null");
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@ -8228,8 +8234,8 @@ public class TDGWTServiceImpl extends RemoteServiceServlet implements
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aslSession.getUsername(), aslSession.getScope()));
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TabularDataService service = TabularDataServiceFactory.getService();
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OpExecution4Denormalization opEx = new OpExecution4Denormalization(service,
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denormalizationSession);
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OpExecution4Denormalization opEx = new OpExecution4Denormalization(
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service, denormalizationSession);
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OpExecutionDirector director = new OpExecutionDirector();
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director.setOperationExecutionBuilder(opEx);
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director.constructOperationExecution();
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@ -8244,7 +8250,8 @@ public class TDGWTServiceImpl extends RemoteServiceServlet implements
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TabularResourceId serviceTR = new TabularResourceId(id);
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logger.debug("OperationInvocation: \n" + invocation.toString());
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Task trTask = service.execute(invocation, serviceTR);
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logger.debug("Denormalization start on service: TaskId " + trTask.getId());
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logger.debug("Denormalization start on service: TaskId "
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+ trTask.getId());
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SessionUtil.setDenormalizationTask(session, trTask);
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return;
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@ -8259,10 +8266,9 @@ public class TDGWTServiceImpl extends RemoteServiceServlet implements
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throw new TDGWTServiceException("Error in start denormalization: "
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+ e.getLocalizedMessage());
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}
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}
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@Override
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public DenormalizationMonitor getDenormalizationMonitor()
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throws TDGWTServiceException {
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@ -8287,8 +8293,8 @@ public class TDGWTServiceImpl extends RemoteServiceServlet implements
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} else {
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logger.debug("Services TaskStatus: " + task.getStatus());
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denormalizationMonitor
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.setStatus(TaskStateMap.map(task.getStatus()));
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denormalizationMonitor.setStatus(TaskStateMap.map(task
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.getStatus()));
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TRId trId;
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TabResource tabResource;
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@ -8356,15 +8362,12 @@ public class TDGWTServiceImpl extends RemoteServiceServlet implements
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} catch (TDGWTSessionExpiredException e) {
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throw e;
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} catch (Throwable e) {
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logger.debug("Error in DenormalizationMonitor: " + e.getLocalizedMessage());
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logger.debug("Error in DenormalizationMonitor: "
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+ e.getLocalizedMessage());
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e.printStackTrace();
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throw new TDGWTServiceException("Error: " + e.getLocalizedMessage());
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}
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}
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}
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@ -2,9 +2,13 @@ package org.gcube.portlets.user.td.gwtservice.server.trservice;
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import java.util.ArrayList;
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import java.util.Arrays;
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import java.util.List;
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import org.gcube.data.analysis.tabulardata.expression.Expression;
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import org.gcube.data.analysis.tabulardata.model.column.Column;
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import org.gcube.data.analysis.tabulardata.model.column.ColumnLocalId;
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import org.gcube.data.analysis.tabulardata.model.column.type.IdColumnType;
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import org.gcube.data.analysis.tabulardata.model.table.Table;
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import org.gcube.data.analysis.tabulardata.model.table.TableId;
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import org.gcube.data.analysis.tabulardata.query.parameters.QueryFilter;
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import org.gcube.data.analysis.tabulardata.query.parameters.QueryOrder;
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@ -15,6 +19,7 @@ import org.gcube.data.analysis.tabulardata.query.parameters.select.QueryColumn;
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import org.gcube.data.analysis.tabulardata.query.parameters.select.QueryColumn.Function;
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import org.gcube.data.analysis.tabulardata.query.parameters.select.QuerySelect;
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import org.gcube.data.analysis.tabulardata.service.TabularDataService;
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import org.gcube.data.analysis.tabulardata.service.exception.NoSuchTableException;
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import org.gcube.portlets.user.td.gwtservice.shared.exception.TDGWTServiceException;
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import org.gcube.portlets.user.td.gwtservice.shared.tr.ColumnData;
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import org.gcube.portlets.user.td.gwtservice.shared.tr.ConditionCode;
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@ -22,6 +27,7 @@ import org.gcube.portlets.user.td.gwtservice.shared.tr.batch.Occurrences;
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import org.gcube.portlets.user.td.gwtservice.shared.tr.batch.OccurrencesForReplaceBatchColumnSession;
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import org.gcube.portlets.user.td.gwtservice.shared.tr.batch.ShowOccurrencesType;
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import org.gcube.portlets.user.td.gwtservice.shared.tr.paging.Direction;
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import org.gcube.portlets.user.td.widgetcommonevent.shared.TRId;
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import org.json.JSONArray;
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import org.json.JSONException;
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import org.slf4j.Logger;
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@ -42,9 +48,9 @@ public class QueryService {
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TabularDataService service,
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OccurrencesForReplaceBatchColumnSession occurrencesSession,
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Direction direction) throws TDGWTServiceException {
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try {
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logger.debug("QueryOccurences");
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ColumnData column = occurrencesSession.getColumnData();
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@ -88,19 +94,22 @@ public class QueryService {
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switch (conditionCode) {
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case AllowedColumnType:
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break;
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case AmbigousValueOnExternalReference:
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case AmbiguousValueOnExternalReference:
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if (column.isViewColumn()) {
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ColumnLocalId sourceColumnId = new ColumnLocalId(column
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.getColumnViewData()
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.getSourceTableDimensionColumnId());
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querySelect = new QuerySelect(Arrays.asList(
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new QueryColumn(columnId), new QueryColumn(
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sourceColumnId)));
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logger.debug("Occurences querySelect:"
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+ querySelect.toString());
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} else {
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ColumnLocalId idColumn=retrieveColumnLocalIdOFIdColumnType(column.getTrId(),
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service);
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querySelect = new QuerySelect(
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Arrays.asList(new QueryColumn(columnId)));
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Arrays.asList(new QueryColumn(columnId),new QueryColumn(idColumn)));
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logger.debug("Occurences querySelect:"
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+ querySelect.toString());
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}
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@ -333,14 +342,14 @@ public class QueryService {
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switch (conditionCode) {
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case AllowedColumnType:
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break;
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case AmbigousValueOnExternalReference:
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case AmbiguousValueOnExternalReference:
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if (column.isViewColumn()) {
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occurence = new Occurrences(
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currentRow.getString(0),
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currentRow.getString(1), 1);
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} else {
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occurence = new Occurrences(
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currentRow.getString(0), 1);
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currentRow.getString(0),currentRow.getString(1), 1);
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}
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break;
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case CastValidation:
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@ -386,7 +395,7 @@ public class QueryService {
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}
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}
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// logger.debug(occurence.toString());
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logger.debug("Occurence: " + occurence.toString());
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occurences.add(occurence);
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}
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@ -411,5 +420,51 @@ public class QueryService {
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}
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}
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/**
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* Retrieve ColumnLocalId value of IdColumnType
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*
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* @param trId
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* @param service
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* @return
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* @throws TDGWTServiceException
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*/
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public static ColumnLocalId retrieveColumnLocalIdOFIdColumnType(TRId trId,
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TabularDataService service) throws TDGWTServiceException {
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try {
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ColumnLocalId columnLocalId = null;
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Table table;
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table = service.getTable(new TableId(
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Long.valueOf(trId.getTableId())));
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List<Column> cols = table.getColumns();
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for (Column c : cols) {
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if (c.getColumnType() instanceof IdColumnType) {
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columnLocalId=c.getLocalId();
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break;
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}
|
||||
}
|
||||
return columnLocalId;
|
||||
|
||||
|
||||
} catch (NumberFormatException e) {
|
||||
logger.error("QueryService - retrieveColumnLocalIdOFIdColumn: "
|
||||
+ e.getLocalizedMessage());
|
||||
e.printStackTrace();
|
||||
throw new TDGWTServiceException(e.getLocalizedMessage());
|
||||
} catch (NoSuchTableException e) {
|
||||
logger.error("QueryService - retrieveColumnLocalIdOFIdColumn: "
|
||||
+ e.getLocalizedMessage());
|
||||
e.printStackTrace();
|
||||
throw new TDGWTServiceException(e.getLocalizedMessage());
|
||||
} catch (Throwable e){
|
||||
logger.error("QueryService - retrieveColumnLocalIdOFIdColumn: "
|
||||
+ e.getLocalizedMessage());
|
||||
e.printStackTrace();
|
||||
throw new TDGWTServiceException(e.getLocalizedMessage());
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
}
|
||||
|
|
|
@ -19,7 +19,7 @@ public enum ConditionCode {
|
|||
GenericTupleValidity(100),
|
||||
DuplicateTupleValidation(101),
|
||||
DuplicateValueInColumn(102),
|
||||
AmbigousValueOnExternalReference(103),
|
||||
AmbiguousValueOnExternalReference(103),
|
||||
MissingValueOnExternalReference(104),
|
||||
CodeNamePresence(105),
|
||||
CastValidation(106),
|
||||
|
|
|
@ -14,7 +14,13 @@ public class Occurrences implements Serializable {
|
|||
|
||||
protected String value;
|
||||
protected int number;
|
||||
protected String rowId;//For view column, contains the value of the associated dimension column
|
||||
|
||||
//For view column,
|
||||
//contains the value of the associated dimension column
|
||||
//for example: [value=atricaudus, number=1, rowId=10]
|
||||
protected String rowId;
|
||||
|
||||
|
||||
|
||||
public Occurrences(){
|
||||
|
||||
|
|
|
@ -4,7 +4,6 @@ import java.io.Serializable;
|
|||
import java.util.ArrayList;
|
||||
|
||||
import org.gcube.portlets.user.td.gwtservice.shared.tr.ColumnData;
|
||||
import org.gcube.portlets.user.td.gwtservice.shared.tr.ConditionCode;
|
||||
import org.gcube.portlets.user.td.widgetcommonevent.shared.TRId;
|
||||
|
||||
/**
|
||||
|
@ -21,32 +20,24 @@ public class ReplaceBatchColumnSession implements Serializable {
|
|||
protected ColumnData columnData;
|
||||
protected ArrayList<ReplaceEntry> replaceEntryList;
|
||||
protected boolean replaceDimension;
|
||||
protected ColumnData connection;
|
||||
|
||||
protected ConditionCode conditionCode;
|
||||
protected String validationColumnColumnId;
|
||||
|
||||
|
||||
public ReplaceBatchColumnSession() {
|
||||
}
|
||||
|
||||
public ReplaceBatchColumnSession(TRId trId, ColumnData columnData,
|
||||
ArrayList<ReplaceEntry> replaceEntryList, boolean replaceDimension) {
|
||||
this.trId = trId;
|
||||
this.columnData = columnData;
|
||||
this.replaceEntryList = replaceEntryList;
|
||||
this.replaceDimension = replaceDimension;
|
||||
}
|
||||
|
||||
public ReplaceBatchColumnSession(TRId trId, ColumnData columnData,
|
||||
ArrayList<ReplaceEntry> replaceEntryList, boolean replaceDimension,
|
||||
ConditionCode conditionCode, String validationColumnColumnId) {
|
||||
ColumnData connection) {
|
||||
this.trId = trId;
|
||||
this.columnData = columnData;
|
||||
this.replaceEntryList = replaceEntryList;
|
||||
this.replaceDimension = replaceDimension;
|
||||
this.conditionCode = conditionCode;
|
||||
this.validationColumnColumnId = validationColumnColumnId;
|
||||
this.connection=connection;
|
||||
}
|
||||
|
||||
|
||||
public TRId getTrId() {
|
||||
return trId;
|
||||
}
|
||||
|
@ -78,32 +69,26 @@ public class ReplaceBatchColumnSession implements Serializable {
|
|||
public void setReplaceDimension(boolean replaceDimension) {
|
||||
this.replaceDimension = replaceDimension;
|
||||
}
|
||||
|
||||
public ConditionCode getConditionCode() {
|
||||
return conditionCode;
|
||||
|
||||
|
||||
public ColumnData getConnection() {
|
||||
return connection;
|
||||
}
|
||||
|
||||
public void setConditionCode(ConditionCode conditionCode) {
|
||||
this.conditionCode = conditionCode;
|
||||
}
|
||||
|
||||
public String getValidationColumnColumnId() {
|
||||
return validationColumnColumnId;
|
||||
}
|
||||
|
||||
public void setValidationColumnColumnId(String validationColumnColumnId) {
|
||||
this.validationColumnColumnId = validationColumnColumnId;
|
||||
public void setConnection(ColumnData connection) {
|
||||
this.connection = connection;
|
||||
}
|
||||
|
||||
@Override
|
||||
public String toString() {
|
||||
return "ReplaceBatchColumnSession [trId=" + trId + ", columnData="
|
||||
+ columnData + ", replaceEntryList=" + replaceEntryList
|
||||
+ ", replaceDimension=" + replaceDimension + ", conditionCode="
|
||||
+ conditionCode + ", validationColumnColumnId="
|
||||
+ validationColumnColumnId + "]";
|
||||
+ ", replaceDimension=" + replaceDimension + ", connection="
|
||||
+ connection + "]";
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
}
|
||||
|
|
|
@ -24,6 +24,30 @@ public class ChangeColumnTypeSession implements Serializable {
|
|||
|
||||
protected ColumnMappingList columnMappingList;
|
||||
|
||||
public ChangeColumnTypeSession(){
|
||||
|
||||
}
|
||||
|
||||
/*
|
||||
* For change to Dimension with mapping
|
||||
*/
|
||||
public ChangeColumnTypeSession(ColumnData columnData,
|
||||
ColumnTypeCode columnTypeCode,
|
||||
ColumnDataType columnDataType,
|
||||
ColumnTypeCode columnTypeCodeTarget,
|
||||
ColumnDataType columnDataTypeTarget,
|
||||
ColumnData codelistColumnReference,
|
||||
ColumnMappingList columnMappingList){
|
||||
this.columnData=columnData;
|
||||
this.columnTypeCode=columnTypeCode;
|
||||
this.columnDataType=columnDataType;
|
||||
this.columnTypeCodeTarget=columnTypeCodeTarget;
|
||||
this.columnDataTypeTarget=columnDataTypeTarget;
|
||||
this.codelistColumnReference=codelistColumnReference;
|
||||
this.columnMappingList=columnMappingList;
|
||||
}
|
||||
|
||||
|
||||
|
||||
public ColumnTypeCode getColumnTypeCode() {
|
||||
return columnTypeCode;
|
||||
|
|
Loading…
Reference in New Issue