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Added Replace Column By Expression 

git-svn-id: https://svn.d4science.research-infrastructures.eu/gcube/trunk/portlets/user/tabular-data-gwt-service@99816 82a268e6-3cf1-43bd-a215-b396298e98cf
This commit is contained in:
Giancarlo Panichi 2014-09-12 16:39:34 +00:00
parent 57f0a7c56b
commit 9e7086cf40
9 changed files with 320 additions and 3 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

2
src/main/java/org/gcube/portlets/user/td/gwtservice/server/SessionConstants.java
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@ -45,6 +45,8 @@ public class SessionConstants {
protected static final String FILTER_COLUMN_SESSION = "FILTER_COLUMN_SESSION";
protected static final String REPLACE_COLUMN_BY_EXPRESSION_SESSION = "REPLACE_COLUMN_BY_EXPRESSION_SESSION";
protected static final String EDIT_ROW_SESSION = "EDIT_ROW_SESSION";
protected static final String TASK_RESUBMIT_SESSION = "TASK_RESUBMIT_SESSION";

35
src/main/java/org/gcube/portlets/user/td/gwtservice/server/SessionUtil.java
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@ -17,6 +17,7 @@ import org.gcube.portal.custom.scopemanager.scopehelper.ScopeHelper;
import org.gcube.portlets.user.td.gwtservice.server.file.CSVFileUploadSession;
import org.gcube.portlets.user.td.gwtservice.server.file.CodelistMappingFileUploadSession;
import org.gcube.portlets.user.td.gwtservice.server.trservice.TRTasksManager;
import org.gcube.portlets.user.td.gwtservice.shared.Constants;
import org.gcube.portlets.user.td.gwtservice.shared.codelisthelper.CodelistMappingSession;
import org.gcube.portlets.user.td.gwtservice.shared.csv.CSVExportSession;
import org.gcube.portlets.user.td.gwtservice.shared.csv.CSVImportSession;
@ -39,6 +40,7 @@ import org.gcube.portlets.user.td.gwtservice.shared.tr.column.DeleteColumnSessio
import org.gcube.portlets.user.td.gwtservice.shared.tr.column.FilterColumnSession;
import org.gcube.portlets.user.td.gwtservice.shared.tr.column.LabelColumnSession;
import org.gcube.portlets.user.td.gwtservice.shared.tr.column.MergeColumnSession;
import org.gcube.portlets.user.td.gwtservice.shared.tr.column.ReplaceColumnByExpressionSession;
import org.gcube.portlets.user.td.gwtservice.shared.tr.column.ReplaceColumnSession;
import org.gcube.portlets.user.td.gwtservice.shared.tr.column.SplitColumnSession;
import org.gcube.portlets.user.td.gwtservice.shared.tr.column.type.ChangeColumnTypeSession;
@ -75,10 +77,10 @@ public class SessionUtil {
ASLSession session;
if (username == null) {
logger.warn("no user found in session, using test one");
throw new TDGWTSessionExpiredException("Session Expired!");
/*throw new TDGWTSessionExpiredException("Session Expired!");*/
// Remove comment for Test
/*
username = Constants.DEFAULT_USER;
String scope = Constants.DEFAULT_SCOPE;
@ -86,7 +88,7 @@ public class SessionUtil {
session = SessionManager.getInstance().getASLSession(
httpSession.getId(), username);
session.setScope(scope);
*/
} else {
session = SessionManager.getInstance().getASLSession(
httpSession.getId(), username);
@ -632,7 +634,34 @@ public class SessionUtil {
filterColumnSession);
}
//
public static ReplaceColumnByExpressionSession getReplaceColumnByExpressionSession(
HttpSession httpSession) {
ReplaceColumnByExpressionSession replaceColumnByExpressionSession = (ReplaceColumnByExpressionSession) httpSession
.getAttribute(SessionConstants.REPLACE_COLUMN_BY_EXPRESSION_SESSION);
if (replaceColumnByExpressionSession != null) {
return replaceColumnByExpressionSession;
} else {
replaceColumnByExpressionSession = new ReplaceColumnByExpressionSession();
httpSession.setAttribute(SessionConstants.REPLACE_COLUMN_BY_EXPRESSION_SESSION,
replaceColumnByExpressionSession);
return replaceColumnByExpressionSession;
}
}
public static void setReplaceColumnByExpressionSession(HttpSession httpSession,
ReplaceColumnByExpressionSession replaceColumnByExpressionSession) {
ReplaceColumnByExpressionSession rce = (ReplaceColumnByExpressionSession) httpSession
.getAttribute(SessionConstants.REPLACE_COLUMN_BY_EXPRESSION_SESSION);
if (rce != null) {
httpSession.removeAttribute(SessionConstants.REPLACE_COLUMN_BY_EXPRESSION_SESSION);
}
httpSession.setAttribute(SessionConstants.REPLACE_COLUMN_BY_EXPRESSION_SESSION,
replaceColumnByExpressionSession);
}
//
public static TaskResubmitSession getTaskResubmitSession(
HttpSession httpSession) {

73
src/main/java/org/gcube/portlets/user/td/gwtservice/server/TDGWTServiceImpl.java
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@ -123,6 +123,7 @@ import org.gcube.portlets.user.td.gwtservice.server.opexecution.OpExecution4Merg
import org.gcube.portlets.user.td.gwtservice.server.opexecution.OpExecution4Normalization;
import org.gcube.portlets.user.td.gwtservice.server.opexecution.OpExecution4ReplaceBatch;
import org.gcube.portlets.user.td.gwtservice.server.opexecution.OpExecution4ReplaceColumn;
import org.gcube.portlets.user.td.gwtservice.server.opexecution.OpExecution4ReplaceColumnByExpression;
import org.gcube.portlets.user.td.gwtservice.server.opexecution.OpExecution4SplitColumn;
import org.gcube.portlets.user.td.gwtservice.server.opexecution.OpExecution4Union;
import org.gcube.portlets.user.td.gwtservice.server.opexecution.OpExecutionDirector;
@ -190,6 +191,7 @@ import org.gcube.portlets.user.td.gwtservice.shared.tr.column.DeleteColumnSessio
import org.gcube.portlets.user.td.gwtservice.shared.tr.column.FilterColumnSession;
import org.gcube.portlets.user.td.gwtservice.shared.tr.column.LabelColumnSession;
import org.gcube.portlets.user.td.gwtservice.shared.tr.column.MergeColumnSession;
import org.gcube.portlets.user.td.gwtservice.shared.tr.column.ReplaceColumnByExpressionSession;
import org.gcube.portlets.user.td.gwtservice.shared.tr.column.ReplaceColumnSession;
import org.gcube.portlets.user.td.gwtservice.shared.tr.column.SplitColumnSession;
import org.gcube.portlets.user.td.gwtservice.shared.tr.column.mapping.ColumnMappingData;
@ -3914,6 +3916,77 @@ public class TDGWTServiceImpl extends RemoteServiceServlet implements
}
}
/**
* Start Replace Column by Expression
*
* @param replaceColumnByExpressionSession
* @param expression
* @param session
* @return
* @throws TDGWTServiceException
*/
public String startReplaceColumnByExpression(ReplaceColumnByExpressionSession replaceColumnByExpressionSession,
Expression expression, HttpSession session)
throws TDGWTServiceException {
try {
// HttpSession session = this.getThreadLocalRequest().getSession();
SessionUtil.setReplaceColumnByExpressionSession(session, replaceColumnByExpressionSession);
ASLSession aslSession = SessionUtil.getAslSession(session);
if (replaceColumnByExpressionSession == null) {
logger.error("ReplaceColumnByExpressionSession is null");
throw new TDGWTServiceException(
"Error in replace column by expression: ReplaceColumnByExpressionSession is null");
}
logger.debug("StartReplaceColumnByExpression: " + replaceColumnByExpressionSession);
AuthorizationProvider.instance.set(new AuthorizationToken(
aslSession.getUsername(), aslSession.getScope()));
TabularDataService service = TabularDataServiceFactory.getService();
checkTabularResourceLocked(service, replaceColumnByExpressionSession.getColumn()
.getTrId());
OpExecution4ReplaceColumnByExpression opEx = new OpExecution4ReplaceColumnByExpression(
service, replaceColumnByExpressionSession, expression);
OpExecutionDirector director = new OpExecutionDirector();
director.setOperationExecutionBuilder(opEx);
director.constructOperationExecution();
OperationExecution invocation = director
.getOperationExecution();
if (invocation == null) {
throw new TDGWTServiceException(
"Error in invocation: Operation not supported");
}
Long id = Long.valueOf(replaceColumnByExpressionSession.getColumn().getTrId()
.getId());
TabularResourceId serviceTR = new TabularResourceId(id);
logger.debug("OperationInvocation: \n" + invocation.toString());
Task trTask = service.execute(invocation, serviceTR);
logger.debug("Replace Column by Expression on service: TaskId " + trTask.getId());
TaskWrapper taskWrapper = new TaskWrapper(trTask,
UIOperationsId.ReplaceByExpression, replaceColumnByExpressionSession
.getColumn().getTrId());
SessionUtil.setStartedTask(session, taskWrapper);
return trTask.getId().getValue();
} catch (TDGWTSessionExpiredException e) {
throw e;
} catch (SecurityException e) {
e.printStackTrace();
throw new TDGWTServiceException(
"Security exception, you haven't rights!");
} catch (Throwable e) {
e.printStackTrace();
throw new TDGWTServiceException("Error in replace column by expression: "
+ e.getLocalizedMessage());
}
}
/**
*

72
src/main/java/org/gcube/portlets/user/td/gwtservice/server/opexecution/OpExecution4ReplaceColumnByExpression.java Normal file
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@ -0,0 +1,72 @@
package org.gcube.portlets.user.td.gwtservice.server.opexecution;
import java.util.HashMap;
import java.util.Map;
import org.gcube.data.analysis.tabulardata.commons.webservice.types.operations.OperationDefinition;
import org.gcube.data.analysis.tabulardata.commons.webservice.types.operations.OperationExecution;
import org.gcube.data.analysis.tabulardata.expression.Expression;
import org.gcube.data.analysis.tabulardata.service.TabularDataService;
import org.gcube.portlets.user.td.gwtservice.server.trservice.ExpressionGenerator;
import org.gcube.portlets.user.td.gwtservice.server.trservice.OperationDefinitionMap;
import org.gcube.portlets.user.td.gwtservice.shared.Constants;
import org.gcube.portlets.user.td.gwtservice.shared.OperationsId;
import org.gcube.portlets.user.td.gwtservice.shared.exception.TDGWTServiceException;
import org.gcube.portlets.user.td.gwtservice.shared.tr.column.ReplaceColumnByExpressionSession;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
/**
* Operation Execution for replace column
*
* @author "Giancarlo Panichi" email: <a
* href="mailto:g.panichi@isti.cnr.it">g.panichi@isti.cnr.it</a>
*
*/
public class OpExecution4ReplaceColumnByExpression extends OpExecutionBuilder {
protected static Logger logger = LoggerFactory
.getLogger(OpExecution4ReplaceColumnByExpression.class);
private TabularDataService service;
private ReplaceColumnByExpressionSession replaceColumnByExpressionSession;
private Expression expression;
public OpExecution4ReplaceColumnByExpression(TabularDataService service,
ReplaceColumnByExpressionSession replaceColumnByExpressionSession,
Expression expression) {
this.service = service;
this.replaceColumnByExpressionSession = replaceColumnByExpressionSession;
this.expression=expression;
}
@Override
public void buildOpEx() throws TDGWTServiceException {
OperationExecution invocation = null;
logger.debug(replaceColumnByExpressionSession.toString());
OperationDefinition operationDefinition;
Map<String, Object> map = new HashMap<String, Object>();
logger.debug("Is a Replace of basic column");
operationDefinition = OperationDefinitionMap.map(
OperationsId.ReplaceColumnByExpression.toString(), service);
Expression value = ExpressionGenerator
.genReplaceValueParameterValue(replaceColumnByExpressionSession);
map.put(Constants.PARAMETER_REPLACE_BY_EXPRESSION_COLUMN_CONDITION,
expression);
map.put(Constants.PARAMETER_REPLACE_BY_EXPRESSION_COLUMN_VALUE, value);
invocation = new OperationExecution(replaceColumnByExpressionSession
.getColumn().getColumnId(),
operationDefinition.getOperationId(), map);
operationExecutionSpec.setOp(invocation);
}
}

21
src/main/java/org/gcube/portlets/user/td/gwtservice/server/trservice/ExpressionGenerator.java
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@ -21,6 +21,7 @@ import org.gcube.portlets.user.td.gwtservice.shared.tr.ColumnData;
import org.gcube.portlets.user.td.gwtservice.shared.tr.batch.OccurrencesForReplaceBatchColumnSession;
import org.gcube.portlets.user.td.gwtservice.shared.tr.batch.ReplaceBatchColumnSession;
import org.gcube.portlets.user.td.gwtservice.shared.tr.batch.ReplaceEntry;
import org.gcube.portlets.user.td.gwtservice.shared.tr.column.ReplaceColumnByExpressionSession;
import org.gcube.portlets.user.td.gwtservice.shared.tr.column.ReplaceColumnSession;
import org.gcube.portlets.user.td.gwtservice.shared.tr.rows.EditRowSession;
import org.gcube.portlets.user.td.widgetcommonevent.shared.TRId;
@ -125,6 +126,26 @@ public class ExpressionGenerator {
+ e.getLocalizedMessage());
}
}
public static Expression genReplaceValueParameterValue(
ReplaceColumnByExpressionSession replaceColumnByExpressionSession)
throws TDGWTServiceException {
try {
TDTypeValue td = TDTypeValueMap.map(replaceColumnByExpressionSession
.getColumn().getDataTypeName(),
replaceColumnByExpressionSession.getReplaceValue());
return td;
} catch (Throwable e) {
logger.debug("Error in genReplaceValueParameterValue: "
+ e.getLocalizedMessage());
e.printStackTrace();
throw new TDGWTServiceException(
"Error generating value parameter: "
+ e.getLocalizedMessage());
}
}
public static Expression genReplaceValueParameterCondition(
ReplaceBatchColumnSession replaceBatchColumnSession, ReplaceEntry re)

1
src/main/java/org/gcube/portlets/user/td/gwtservice/shared/UIOperationsId.java
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@ -85,6 +85,7 @@ public enum UIOperationsId {
SplitColumn("Split Column"),
Normalize("Normalize"),
ReplaceValue("Replace Value"),
ReplaceByExpression("Replace By Expression"),
ReplaceBatch("Replace Batch"),
FilterColumn("Filter Column"),
Union("Union"),

6
src/main/java/org/gcube/portlets/user/td/gwtservice/shared/tr/column/FilterColumnSession.java
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@ -5,6 +5,12 @@ import java.io.Serializable;
import org.gcube.portlets.user.td.gwtservice.shared.tr.ColumnData;
import org.gcube.portlets.user.td.widgetcommonevent.shared.expression.C_Expression;
/**
*
* @author giancarlo
* email: <a href="mailto:g.panichi@isti.cnr.it">g.panichi@isti.cnr.it</a>
*
*/
public class FilterColumnSession implements Serializable{
private static final long serialVersionUID = -5362632291599472352L;

62
src/main/java/org/gcube/portlets/user/td/gwtservice/shared/tr/column/ReplaceColumnByExpressionSession.java Normal file
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@ -0,0 +1,62 @@
package org.gcube.portlets.user.td.gwtservice.shared.tr.column;
import java.io.Serializable;
import org.gcube.portlets.user.td.gwtservice.shared.tr.ColumnData;
import org.gcube.portlets.user.td.widgetcommonevent.shared.expression.C_Expression;
/**
*
* @author giancarlo
* email: <a href="mailto:g.panichi@isti.cnr.it">g.panichi@isti.cnr.it</a>
*
*/
public class ReplaceColumnByExpressionSession implements Serializable{
private static final long serialVersionUID = -3940140817918362233L;
protected ColumnData column;
protected C_Expression cexpression;
protected String replaceValue;
public ReplaceColumnByExpressionSession(){
}
public ReplaceColumnByExpressionSession(ColumnData column, C_Expression cexpression,
String replaceValue){
this.column=column;
this.cexpression=cexpression;
this.replaceValue=replaceValue;
}
public ColumnData getColumn() {
return column;
}
public void setColumn(ColumnData column) {
this.column = column;
}
public C_Expression getCexpression() {
return cexpression;
}
public void setCexpression(C_Expression cexpression) {
this.cexpression = cexpression;
}
public String getReplaceValue() {
return replaceValue;
}
public void setReplaceValue(String replaceValue) {
this.replaceValue = replaceValue;
}
@Override
public String toString() {
return "ReplaceColumnByExpressionSession [column=" + column
+ ", cexpression=" + cexpression + ", replaceValue="
+ replaceValue + "]";
}
}

51
src/test/java/org/gcube/portlets/user/td/gwtservice/client/TestServiceListTR.java Normal file
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@ -0,0 +1,51 @@
package org.gcube.portlets.user.td.gwtservice.client;
import java.util.List;
import org.gcube.common.scope.api.ScopeProvider;
import org.gcube.data.analysis.tabulardata.commons.utils.AuthorizationProvider;
import org.gcube.data.analysis.tabulardata.commons.utils.AuthorizationToken;
import org.gcube.data.analysis.tabulardata.model.column.Column;
import org.gcube.data.analysis.tabulardata.model.table.Table;
import org.gcube.data.analysis.tabulardata.service.TabularDataService;
import org.gcube.data.analysis.tabulardata.service.impl.TabularDataServiceFactory;
import org.gcube.data.analysis.tabulardata.service.tabular.TabularResource;
import org.gcube.portlets.user.td.gwtservice.shared.Constants;
import org.junit.Assert;
import org.junit.Test;
public class TestServiceListTR {
@Test
public void listTR() throws Exception {
System.out.println("------------List of Tabular Resources--------------");
ScopeProvider.instance.set(Constants.DEFAULT_SCOPE);
AuthorizationProvider.instance.set(new AuthorizationToken(Constants.DEFAULT_USER));
TabularDataService service = TabularDataServiceFactory.getService();
List<TabularResource> trs = service.getTabularResources();
Assert.assertTrue(trs.size() > 0);
Table lastTable=null;
for (TabularResource tr : trs) {
lastTable=service.getLastTable(tr.getId());
if(lastTable!=null){
System.out.println("TabularResource: [ id=" + tr.getId().getValue()+", lastTable=[ id="+lastTable.getId().getValue()+", type="+lastTable.getTableType().getName()+"]]");
System.out.println("Last table id="+lastTable.getId()+", name="+lastTable.getName());
for(Column col:lastTable.getColumns()){
System.out.println("Column: [name:" + col.getName()+", localId:"+col.getLocalId()+", dataType:"+col.getDataType()+"]");
}
System.out.println("---------------------------------");
} else {
System.out.println("TabularResource: [ id=" + tr.getId().getValue()+", lastTable= "+lastTable+"]");
System.out.println("---------------------------------");
}
}
}
}