ref #11879: TDM - Update to StorageHUB
https://support.d4science.org/issues/#11879 Updated to StorageHub git-svn-id: https://svn.d4science.research-infrastructures.eu/gcube/trunk/portlets/user/tabular-data-gwt-service@171464 82a268e6-3cf1-43bd-a215-b396298e98cf
This commit is contained in:
parent
f840ffae53
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12
pom.xml
12
pom.xml
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@ -72,9 +72,6 @@
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<version>1.0.1</version>
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<scope>runtime</scope>
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</dependency>
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<!-- <dependency> <groupId>org.gcube.common</groupId> <artifactId>common-authorization</artifactId>
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<scope>runtime</scope> </dependency> <dependency> <groupId>org.gcube.common</groupId>
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<artifactId>authorization-client</artifactId> <scope>runtime</scope> </dependency> -->
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</dependencies>
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</profile>
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@ -134,17 +131,14 @@
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<scope>provided</scope>
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</dependency>
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<!-- GCube Widgets <dependency> <groupId>org.gcube.portlets.user</groupId>
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<artifactId>gcube-widgets</artifactId> <scope>compile</scope> </dependency> -->
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<!-- JSON -->
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<dependency>
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<groupId>org.json</groupId>
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<artifactId>json</artifactId>
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<version>20090211</version>
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</dependency>
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<!-- SDMX -->
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<dependency>
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<groupId>org.gcube.data.publishing</groupId>
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<artifactId>sdmx-registry-client-gcube</artifactId>
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@ -26,13 +26,6 @@ import java.util.UUID;
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import javax.servlet.ServletException;
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import javax.servlet.http.HttpServletRequest;
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import org.gcube.common.homelibrary.home.Home;
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import org.gcube.common.homelibrary.home.HomeLibrary;
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import org.gcube.common.homelibrary.home.HomeManager;
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import org.gcube.common.homelibrary.home.HomeManagerFactory;
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import org.gcube.common.homelibrary.home.exceptions.InternalErrorException;
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import org.gcube.common.homelibrary.home.workspace.Workspace;
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import org.gcube.common.homelibrary.home.workspace.WorkspaceItem;
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import org.gcube.data.analysis.tabulardata.commons.templates.model.TemplateCategory;
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import org.gcube.data.analysis.tabulardata.commons.templates.model.columns.ColumnCategory;
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import org.gcube.data.analysis.tabulardata.commons.templates.model.columns.TemplateColumn;
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@ -295,6 +288,7 @@ import org.gcube.portlets.user.td.gwtservice.shared.tr.type.Dataset;
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import org.gcube.portlets.user.td.gwtservice.shared.tr.union.UnionSession;
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import org.gcube.portlets.user.td.gwtservice.shared.uriresolver.UriResolverSession;
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import org.gcube.portlets.user.td.gwtservice.shared.user.UserInfo;
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import org.gcube.portlets.user.td.gwtservice.shared.workspace.ItemDescription;
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import org.gcube.portlets.user.td.widgetcommonevent.shared.TRId;
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import org.gcube.portlets.user.td.widgetcommonevent.shared.mime.MimeTypeSupport;
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import org.gcube.portlets.user.td.widgetcommonevent.shared.operations.UIOperationsId;
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@ -3800,37 +3794,9 @@ public class TDGWTServiceImpl extends RemoteServiceServlet implements TDGWTServi
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public void getFileFromWorkspace(CSVImportSession csvImportSession) throws TDGWTServiceException {
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HttpServletRequest httpRequest = this.getThreadLocalRequest();
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ServiceCredentials serviceCredentials = SessionUtil.getServiceCredentials(httpRequest);
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Workspace w = null;
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WorkspaceItem wi = null;
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try {
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HomeManagerFactory factory = HomeLibrary.getHomeManagerFactory();
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HomeManager manager = factory.getHomeManager();
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Home home = manager.getHome();
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w = home.getWorkspace();
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wi = w.getItem(csvImportSession.getItemId());
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} catch (Throwable e) {
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e.printStackTrace();
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throw new TDGWTServiceException(
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"Error in importCSV getFileFromWorkspace accessing the workspace: " + e.getLocalizedMessage(), e);
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}
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if (wi == null) {
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logger.error("Error retrieving the item on workspace" + csvImportSession.getItemId());
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throw new TDGWTServiceException("Error retrieving the item on workspace" + csvImportSession.getItemId());
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}
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try {
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logger.debug("WorkspaceItem [id:" + wi.getId() + " name:" + wi.getName() + " remotePath:"
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+ wi.getRemotePath() + "]");
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} catch (InternalErrorException e1) {
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e1.printStackTrace();
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throw new TDGWTServiceException("Error retrieving the item on workspace" + wi);
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}
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FilesStorage filesStorage = new FilesStorage();
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ItemDescription itemDescription = filesStorage.getItem(serviceCredentials.getUserName(),
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csvImportSession.getId());
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CSVFileUploadSession fileUploadSession = new CSVFileUploadSession();
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// CSVImportMonitor csvImportMonitor = new CSVImportMonitor();
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@ -3845,10 +3811,9 @@ public class TDGWTServiceImpl extends RemoteServiceServlet implements TDGWTServi
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SessionUtil.setCSVFileUploadSession(httpRequest, serviceCredentials, fileUploadSession);
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try {
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FilesStorage filesStorage = new FilesStorage();
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InputStream is = filesStorage.retrieveInputStream(serviceCredentials.getUserName(), wi);
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FileUtil.setImportFileCSV(fileUploadSession, is, wi.getName(), Constants.FILE_CSV_MIMETYPE);
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InputStream is = filesStorage.retrieveInputStream(serviceCredentials.getUserName(),
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itemDescription.getId());
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FileUtil.setImportFileCSV(fileUploadSession, is, itemDescription.getName(), Constants.FILE_CSV_MIMETYPE);
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} catch (Throwable e) {
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FileUploadMonitor fum = SessionUtil.getFileUploadMonitor(httpRequest, serviceCredentials);
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fum.setFailed("An error occured elaborating the file", FileUtil.exceptionDetailMessage(e));
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@ -4513,7 +4478,7 @@ public class TDGWTServiceImpl extends RemoteServiceServlet implements TDGWTServi
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logger.debug("Share with Users: " + users);
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service.share(tabularResourceId, usersArray);
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}
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} catch (TDGWTServiceException e) {
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throw e;
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} catch (SecurityException e) {
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@ -4526,7 +4491,6 @@ public class TDGWTServiceImpl extends RemoteServiceServlet implements TDGWTServi
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}
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}
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@Override
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public String startExcelExport(ExcelExportSession exportSession) throws TDGWTServiceException {
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HttpServletRequest httpRequest = null;
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@ -4568,12 +4532,12 @@ public class TDGWTServiceImpl extends RemoteServiceServlet implements TDGWTServi
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// /
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switch (exportSession.getExportType()) {
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case DATASET:
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OpExecution4ExcelDatasetExport opExD = new OpExecution4ExcelDatasetExport(httpRequest, serviceCredentials,
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service, exportSession);
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OpExecution4ExcelDatasetExport opExD = new OpExecution4ExcelDatasetExport(httpRequest,
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serviceCredentials, service, exportSession);
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director.setOperationExecutionBuilder(opExD);
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break;
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case GENERIC:
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case CODELIST:
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case CODELIST:
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default:
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logger.error("Error in Excel Export: Only Codelist and Dataset are supported!");
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throw new TDGWTServiceException("Error in ExcelExport: Only Dataset are supported!");
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@ -4607,8 +4571,7 @@ public class TDGWTServiceImpl extends RemoteServiceServlet implements TDGWTServi
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}
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}
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@Override
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public String startSDMXTemplateExport(SDMXTemplateExportSession sdmxTemplateExportSession)
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throws TDGWTServiceException {
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@ -7381,43 +7344,11 @@ public class TDGWTServiceImpl extends RemoteServiceServlet implements TDGWTServi
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@Override
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public void getFileFromWorkspace(CodelistMappingSession codelistMappingSession) throws TDGWTServiceException {
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Workspace w = null;
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WorkspaceItem wi = null;
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HttpServletRequest httpRequest = this.getThreadLocalRequest();
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ServiceCredentials serviceCredentials = SessionUtil.getServiceCredentials(httpRequest);
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try {
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HomeManagerFactory factory = HomeLibrary.getHomeManagerFactory();
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HomeManager manager = factory.getHomeManager();
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Home home = manager.getHome();
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w = home.getWorkspace();
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wi = w.getItem(codelistMappingSession.getItemId());
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} catch (Throwable e) {
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e.printStackTrace();
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throw new TDGWTServiceException(
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"Error in import Codelist Mapping getFileFromWorkspace accessing the workspace: "
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+ e.getLocalizedMessage(),
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e);
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}
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if (wi == null) {
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logger.error("Error retrieving the item on workspace" + codelistMappingSession.getItemId());
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throw new TDGWTServiceException(
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"Error retrieving the item on workspace" + codelistMappingSession.getItemId());
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}
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try {
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logger.debug("WorkspaceItem [id:" + wi.getId() + " name:" + wi.getName() + " remotePath:"
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+ wi.getRemotePath() + "]");
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} catch (InternalErrorException e1) {
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e1.printStackTrace();
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throw new TDGWTServiceException("Error retrieving the item on workspace" + wi);
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}
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FilesStorage filesStorage = new FilesStorage();
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ItemDescription itemDescription = filesStorage.getItem(serviceCredentials.getUserName(),
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codelistMappingSession.getItemId());
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CodelistMappingFileUploadSession fileUploadSession = new CodelistMappingFileUploadSession();
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// CodelistMappingMonitor codelistMappingMonitor = new
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@ -7432,10 +7363,11 @@ public class TDGWTServiceImpl extends RemoteServiceServlet implements TDGWTServi
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SessionUtil.setCodelistMappingFileUploadSession(httpRequest, serviceCredentials, fileUploadSession);
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try {
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FilesStorage filesStorage = new FilesStorage();
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InputStream is = filesStorage.retrieveInputStream(serviceCredentials.getUserName(), wi);
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FileUtil.setImportFileCodelistMapping(fileUploadSession, is, wi.getName(), Constants.FILE_XML_MIMETYPE);
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InputStream is = filesStorage.retrieveInputStream(serviceCredentials.getUserName(),
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itemDescription.getId());
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FileUtil.setImportFileCodelistMapping(fileUploadSession, is, itemDescription.getName(),
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Constants.FILE_XML_MIMETYPE);
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} catch (Throwable e) {
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FileUploadMonitor fum = SessionUtil.getFileUploadMonitor(httpRequest, serviceCredentials);
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fum.setFailed("An error occured elaborating the file", FileUtil.exceptionDetailMessage(e));
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@ -5,7 +5,6 @@ import java.io.InputStream;
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import java.net.URL;
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import java.net.URLConnection;
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import org.gcube.common.homelibrary.home.workspace.WorkspaceItem;
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import org.gcube.common.storagehub.client.StreamDescriptor;
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import org.gcube.common.storagehub.client.dsl.FileContainer;
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import org.gcube.common.storagehub.client.dsl.FolderContainer;
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@ -17,6 +16,7 @@ import org.gcube.contentmanager.storageclient.wrapper.AccessType;
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import org.gcube.contentmanager.storageclient.wrapper.MemoryType;
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import org.gcube.contentmanager.storageclient.wrapper.StorageClient;
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import org.gcube.portlets.user.td.gwtservice.shared.exception.TDGWTServiceException;
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import org.gcube.portlets.user.td.gwtservice.shared.workspace.ItemDescription;
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import org.slf4j.Logger;
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import org.slf4j.LoggerFactory;
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@ -46,7 +46,7 @@ public class FilesStorage {
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logger.debug("remotePath: " + remotePath);
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String id = client.put(true).LFile(file.getAbsolutePath()).RFile(remotePath);
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client.close();
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return id;
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} catch (Throwable e) {
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@ -111,46 +111,6 @@ public class FilesStorage {
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}
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}
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/**
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*
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*
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*
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*
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* @param user
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* User
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* @param wi
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* Workspace item
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* @param file
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* File
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* @throws TDGWTServiceException
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* Exception
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*/
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/*
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* public void retrieveFile(String user, WorkspaceItem wi, File file) throws
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* TDGWTServiceException { try { logger.debug("retrieveFile: [user=" + user
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* + ", item=" + wi + "]"); StorageHubClient shc = new StorageHubClient();
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* FileContainer fileContainer = shc.open(wi.getId()).asFile();
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* StreamDescriptor streamDescriptor = fileContainer.download(); try
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* (BufferedInputStream bis = new
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* BufferedInputStream(streamDescriptor.getStream())) { try
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* (BufferedOutputStream bos = new BufferedOutputStream(new
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* FileOutputStream(file))) {
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*
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* byte[] buffer = new byte[1024]; int readCount; while ((readCount =
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* bis.read(buffer)) > 0) { bos.write(buffer, 0, readCount); } } catch
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* (Throwable e) { logger.error("Error trasferring file from storage: " +
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* e.getLocalizedMessage(), e); throw new
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* TDGWTServiceException("Error trasferring file from storage: " +
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* e.getLocalizedMessage(), e); } }
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*
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* } catch (Throwable e) {
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* logger.error("Error retrieving file from StorageHub", e); throw new
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* TDGWTServiceException("Error retrieving file from StorageHub: " +
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* e.getLocalizedMessage(), e); }
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*
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* }
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*/
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/**
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*
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*
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@ -158,22 +118,22 @@ public class FilesStorage {
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* @param user
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* User
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*
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* @param wi
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* Workspace item
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* @param itemId
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* Workspace item id
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* @return Input stream
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* @throws TDGWTServiceException
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* Exception
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*/
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public InputStream retrieveInputStream(String user, WorkspaceItem wi) throws TDGWTServiceException {
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public InputStream retrieveInputStream(String user, String itemId) throws TDGWTServiceException {
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InputStream is = null;
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try {
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logger.debug("retrieveFile: [user=" + user + ", item=" + wi + "]");
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logger.debug("retrieveFile: [user=" + user + ", itemId=" + itemId + "]");
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StorageHubClient shc = new StorageHubClient();
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FileContainer fileContainer = shc.open(wi.getId()).asFile();
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FileContainer fileContainer = shc.open(itemId).asFile();
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StreamDescriptor streamDescriptor = fileContainer.download();
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is = streamDescriptor.getStream();
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} catch (Throwable e) {
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logger.error("Error retrieving file from StorageHub", e);
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throw new TDGWTServiceException("Error retrieving file from StorageHub: " + e.getLocalizedMessage(), e);
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@ -219,19 +179,19 @@ public class FilesStorage {
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* Uri
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* @param user
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* User
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* @param itemName
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* @param name
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* Item name
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* @param itemDescription
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* @param description
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* Item description
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* @param itemMimetype
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* @param mimetype
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* Item mime type
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* @param folderId
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* Destination folder
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* @throws TDGWTServiceException
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* Exception
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*/
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public void createItemOnWorkspace(String uri, String user, String itemName, String itemDescription,
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String itemMimetype, String folderId) throws TDGWTServiceException {
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public void createItemOnWorkspace(String uri, String user, String name, String description, String mimetype,
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String folderId) throws TDGWTServiceException {
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try {
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@ -246,7 +206,7 @@ public class FilesStorage {
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StorageHubClient shc = new StorageHubClient();
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FolderContainer folderContainer = shc.open(folderId).asFolder();
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FileContainer fileContainer = folderContainer.uploadFile(is, itemName, itemDescription);
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FileContainer fileContainer = folderContainer.uploadFile(is, name, description);
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AbstractFileItem afi = fileContainer.get();
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logger.debug("Created file on workspace: " + afi.getId());
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}
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@ -265,33 +225,35 @@ public class FilesStorage {
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* Storage id
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* @param user
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* User
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* @param itemName
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* @param name
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* Item name
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* @param itemDescription
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* @param description
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* Item description
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* @param itemMimetype
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* @param mimetype
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* Item mime type
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* @param itemFolder
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* @param folderId
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* Destination Folder
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* @throws TDGWTServiceException
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* Exception
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*/
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public void createItemOnWorkspaceByStorageId(String storageId, String user, String itemName, String itemDescription,
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String itemMimetype, String itemFolder) throws TDGWTServiceException {
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public void createItemOnWorkspaceByStorageId(String storageId, String user, String name, String description,
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String mimetype, String folderId) throws TDGWTServiceException {
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try {
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logger.debug("CreateItemOnWorkspaceByStorageId: [storageId=" + storageId + ", user=" + user + ", name="
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+ name + ", description=" + description + ", mimeType=" + mimetype + ", folderId=" + folderId
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+ "]");
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IClient client = new StorageClient(user, AccessType.PUBLIC, MemoryType.VOLATILE).getClient();
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try (InputStream is = client.get().RFileAsInputStream(storageId)) {
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StorageHubClient shc = new StorageHubClient();
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FolderContainer folderContainer = shc.open(itemFolder).asFolder();
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FileContainer fileContainer = folderContainer.uploadFile(is, itemName, itemDescription);
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FolderContainer folderContainer = shc.open(folderId).asFolder();
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FileContainer fileContainer = folderContainer.uploadFile(is, name, description);
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AbstractFileItem afi = fileContainer.get();
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logger.debug("Created file on workspace: " + afi.getId());
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}
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client.close();
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} catch (Throwable e) {
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logger.error("Error creating item on workspace: " + e.getLocalizedMessage(), e);
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@ -314,6 +276,7 @@ public class FilesStorage {
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public String getVREFolderIdByScope(String user, String scope) throws TDGWTServiceException {
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try {
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logger.debug("GetVREFolderIdByScope: [user=" + user + ", scope=" + scope + "]");
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StorageHubClient shc = new StorageHubClient();
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FolderContainer folderContainer = shc.openVREFolder();
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FolderItem vreFolder = folderContainer.get();
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@ -333,4 +296,32 @@ public class FilesStorage {
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}
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/**
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*
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* @param user
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* User
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* @param itemId
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* Item Id
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* @return Item Description
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* @throws TDGWTServiceException
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* Error
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*/
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public ItemDescription getItem(String user, String itemId) throws TDGWTServiceException {
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try {
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logger.debug("getItem: [user=" + user + ", itemId=" + itemId + "]");
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StorageHubClient shc = new StorageHubClient();
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FileContainer fileContainer = shc.open(itemId).asFile();
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AbstractFileItem item = fileContainer.get();
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ItemDescription itemDescription = new ItemDescription(item.getId(), item.getName(), item.getOwner(),
|
||||
item.getPath(), item.getClass().getSimpleName());
|
||||
logger.debug("Item retrieved: " + itemDescription);
|
||||
|
||||
return itemDescription;
|
||||
|
||||
} catch (Throwable e) {
|
||||
logger.error("Error retrieving Item from StorageHub: " + e.getLocalizedMessage(), e);
|
||||
throw new TDGWTServiceException("Error retrieving Item from StorageHub: " + e.getLocalizedMessage(), e);
|
||||
}
|
||||
}
|
||||
|
||||
}
|
||||
|
|
|
|||
|
|
@ -0,0 +1,98 @@
|
|||
package org.gcube.portlets.user.td.gwtservice.shared.workspace;
|
||||
|
||||
import java.io.Serializable;
|
||||
|
||||
/**
|
||||
*
|
||||
* @author Giancarlo Panichi
|
||||
*
|
||||
*
|
||||
*/
|
||||
public class ItemDescription implements Serializable {
|
||||
|
||||
private static final long serialVersionUID = -6624452446980057923L;
|
||||
|
||||
private String id;
|
||||
private String name;
|
||||
private String owner;
|
||||
private String path;
|
||||
private String type;
|
||||
private String publicLink;
|
||||
|
||||
public ItemDescription() {
|
||||
super();
|
||||
}
|
||||
|
||||
public ItemDescription(String id, String name, String owner, String path, String type) {
|
||||
super();
|
||||
this.id = id;
|
||||
this.name = name;
|
||||
this.owner = owner;
|
||||
this.path = path;
|
||||
this.type = type;
|
||||
}
|
||||
|
||||
public String getId() {
|
||||
return id;
|
||||
}
|
||||
|
||||
public void setId(String id) {
|
||||
this.id = id;
|
||||
}
|
||||
|
||||
public String getName() {
|
||||
return name;
|
||||
}
|
||||
|
||||
public void setName(String name) {
|
||||
this.name = name;
|
||||
}
|
||||
|
||||
public String getOwner() {
|
||||
return owner;
|
||||
}
|
||||
|
||||
public void setOwner(String owner) {
|
||||
this.owner = owner;
|
||||
}
|
||||
|
||||
public String getPath() {
|
||||
return path;
|
||||
}
|
||||
|
||||
public void setPath(String path) {
|
||||
this.path = path;
|
||||
}
|
||||
|
||||
public String getType() {
|
||||
return type;
|
||||
}
|
||||
|
||||
public void setType(String type) {
|
||||
this.type = type;
|
||||
}
|
||||
|
||||
public String getPublicLink() {
|
||||
return publicLink;
|
||||
}
|
||||
|
||||
public void setPublicLink(String publicLink) {
|
||||
this.publicLink = publicLink;
|
||||
}
|
||||
|
||||
public boolean compareInfo(ItemDescription itemDescription) {
|
||||
if (itemDescription != null && id.compareTo(itemDescription.getId()) == 0) {
|
||||
return true;
|
||||
} else {
|
||||
return false;
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
@Override
|
||||
public String toString() {
|
||||
return "ItemDescription [id=" + id + ", name=" + name + ", owner=" + owner + ", path=" + path + ", type=" + type
|
||||
+ ", publicLink=" + publicLink + "]";
|
||||
}
|
||||
|
||||
}
|
||||
Loading…
Reference in New Issue