Standardized project structure

Details:
- Documentation folders refactored to mirror 'standard' organization.
- DocsGenerator removed to let default Tomcat servlet serve
  documentation
- Added DocsRedirectFilter to redirect all the GETs to /docs and
  /api-docs to their index.html pages
- Added CHANGELOG file

.classpath

@@ -1,38 +1,39 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <classpath>
+	<classpathentry excluding="**" kind="src" output="target/classes" path="src/main/resources">
+		<attributes>
+			<attribute name="maven.pomderived" value="true"/>
+			<attribute name="optional" value="true"/>
+		</attributes>
+	</classpathentry>
+	<classpathentry excluding="**" kind="src" output="target/test-classes" path="src/test/resources">
+		<attributes>
+			<attribute name="test" value="true"/>
+			<attribute name="maven.pomderived" value="true"/>
+			<attribute name="optional" value="true"/>
+		</attributes>
+	</classpathentry>
+	<classpathentry kind="con" path="org.eclipse.m2e.MAVEN2_CLASSPATH_CONTAINER">
+		<attributes>
+			<attribute name="maven.pomderived" value="true"/>
+		</attributes>
+	</classpathentry>
+	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-17">
+		<attributes>
+			<attribute name="maven.pomderived" value="true"/>
+		</attributes>
+	</classpathentry>
 	<classpathentry kind="src" output="target/classes" path="src/main/java">
 		<attributes>
 			<attribute name="optional" value="true"/>
 			<attribute name="maven.pomderived" value="true"/>
 		</attributes>
 	</classpathentry>
-	<classpathentry excluding="**" kind="src" output="target/classes" path="src/main/resources">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
 	<classpathentry kind="src" output="target/test-classes" path="src/test/java">
 		<attributes>
+			<attribute name="test" value="true"/>
 			<attribute name="optional" value="true"/>
 			<attribute name="maven.pomderived" value="true"/>
-			<attribute name="test" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry excluding="**" kind="src" output="target/test-classes" path="src/test/resources">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-			<attribute name="test" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="con" path="org.eclipse.m2e.MAVEN2_CLASSPATH_CONTAINER">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-			<attribute name="org.eclipse.jst.component.dependency" value="/WEB-INF/lib"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.8">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
 		</attributes>
 	</classpathentry>
 	<classpathentry kind="output" path="target/classes"/>

.gitignore

@@ -1 +1,8 @@
 target
+/Storagehub-TODO
+/postgres-data/
+.classpath
+.settings/org.eclipse.jdt.core.prefs
+/.project
+/.externalToolBuilders/
+/.settings/

.project

@@ -6,8 +6,13 @@
 	</projects>
 	<buildSpec>
 		<buildCommand>
-			<name>org.eclipse.wst.common.project.facet.core.builder</name>
+			<name>org.eclipse.ui.externaltools.ExternalToolBuilder</name>
+			<triggers>full,incremental,</triggers>
 			<arguments>
+				<dictionary>
+					<key>LaunchConfigHandle</key>
+					<value>&lt;project&gt;/.externalToolBuilders/org.eclipse.wst.common.project.facet.core.builder.launch</value>
+				</dictionary>
 			</arguments>
 		</buildCommand>
 		<buildCommand>
@@ -16,8 +21,13 @@
 			</arguments>
 		</buildCommand>
 		<buildCommand>
-			<name>org.eclipse.wst.validation.validationbuilder</name>
+			<name>org.eclipse.ui.externaltools.ExternalToolBuilder</name>
+			<triggers>full,incremental,</triggers>
 			<arguments>
+				<dictionary>
+					<key>LaunchConfigHandle</key>
+					<value>&lt;project&gt;/.externalToolBuilders/org.eclipse.wst.validation.validationbuilder.launch</value>
+				</dictionary>
 			</arguments>
 		</buildCommand>
 		<buildCommand>

.settings/org.eclipse.jdt.core.prefs

@@ -1,14 +1,16 @@
 eclipse.preferences.version=1
 org.eclipse.jdt.core.compiler.codegen.inlineJsrBytecode=enabled
 org.eclipse.jdt.core.compiler.codegen.methodParameters=do not generate
-org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.8
+org.eclipse.jdt.core.compiler.codegen.targetPlatform=17
 org.eclipse.jdt.core.compiler.codegen.unusedLocal=preserve
-org.eclipse.jdt.core.compiler.compliance=1.8
+org.eclipse.jdt.core.compiler.compliance=17
 org.eclipse.jdt.core.compiler.debug.lineNumber=generate
 org.eclipse.jdt.core.compiler.debug.localVariable=generate
 org.eclipse.jdt.core.compiler.debug.sourceFile=generate
 org.eclipse.jdt.core.compiler.problem.assertIdentifier=error
+org.eclipse.jdt.core.compiler.problem.enablePreviewFeatures=disabled
 org.eclipse.jdt.core.compiler.problem.enumIdentifier=error
 org.eclipse.jdt.core.compiler.problem.forbiddenReference=warning
+org.eclipse.jdt.core.compiler.problem.reportPreviewFeatures=warning
 org.eclipse.jdt.core.compiler.release=disabled
-org.eclipse.jdt.core.compiler.source=1.8
+org.eclipse.jdt.core.compiler.source=17

.settings/org.eclipse.wst.common.component

@@ -1,16 +1,343 @@
 <?xml version="1.0" encoding="UTF-8"?><project-modules id="moduleCoreId" project-version="1.5.0">
+                                                                                                                                                                    
+    
+    
+    
+    
+    
+    
+    
+    
+    
+    
+    
+    
+    
+    
+    
+    
+    
+    
+    
+    
+    
+    
+    
+    
+    
+    
+    
+    
+    
+    
+    
+    
+    
+    
+    
+    
+    
+    
+    
     <wb-module deploy-name="storagehub">
+                                                                                                                                                                                                                                                                                                                                        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
         <wb-resource deploy-path="/" source-path="/target/m2e-wtp/web-resources"/>
+                                                                                                                                                                                                                                                                                                                                        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
         <wb-resource deploy-path="/" source-path="/src/main/webapp" tag="defaultRootSource"/>
-        <wb-resource deploy-path="/WEB-INF/classes" source-path="/src/main/java"/>
+                                        
+        
+        
+        
         <wb-resource deploy-path="/WEB-INF/classes" source-path="/src/main/resources"/>
-        <dependent-module archiveName="authorization-control-library-1.0.0-SNAPSHOT.jar" deploy-path="/WEB-INF/lib" handle="module:/resource/authorization-control-library/authorization-control-library">
+        <wb-resource deploy-path="/WEB-INF/classes" source-path="/src/main/java"/>
+        <wb-resource deploy-path="/WEB-INF/classes" source-path="/src/test/java"/>
+                                
+        
+        
+        <dependent-module archiveName="common-smartgears-app-3.0.1-SNAPSHOT.jar" deploy-path="/WEB-INF/lib" handle="module:/resource/common-smartgears-app/common-smartgears-app">
+                                                
+            
+            
             <dependency-type>uses</dependency-type>
+                                            
+        
+        
         </dependent-module>
-        <dependent-module archiveName="storagehub-model-1.0.5.jar" deploy-path="/WEB-INF/lib" handle="module:/resource/storagehub-model/storagehub-model">
+                                
+        
+        
+        <dependent-module archiveName="authorization-control-library-2.0.0-SNAPSHOT.jar" deploy-path="/WEB-INF/lib" handle="module:/resource/authorization-control-library/authorization-control-library">
+                                                
+            
+            
             <dependency-type>uses</dependency-type>
+                                            
+        
+        
         </dependent-module>
+                                
+        
+        
+        <dependent-module archiveName="storagehub-model-2.0.0-SNAPSHOT.jar" deploy-path="/WEB-INF/lib" handle="module:/resource/storagehub-model/storagehub-model">
+                                                
+            
+            
+            <dependency-type>uses</dependency-type>
+                                            
+        
+        
+        </dependent-module>
+                                
+        
+        
+        <dependent-module archiveName="storagehub-script-utils-2.0.0-SNAPSHOT.jar" deploy-path="/WEB-INF/lib" handle="module:/resource/storagehub-scripting-util/storagehub-scripting-util">
+                                                
+            
+            
+            <dependency-type>uses</dependency-type>
+                                            
+        
+        
+        </dependent-module>
+                                                                                                                                                                                                                                                                                                                                        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
         <property name="context-root" value="storagehub"/>
+                                                                                                                                                                                                                                                                                                                                        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
+        
         <property name="java-output-path" value="/storagehub-webapp_BRANCH/target/classes"/>
+                                                                                                                                                                                                                                                                                                                                    
+    
+    
+    
+    
+    
+    
+    
+    
+    
+    
+    
+    
+    
+    
+    
+    
+    
+    
+    
+    
+    
+    
+    
+    
+    
+    
+    
+    
+    
+    
+    
+    
+    
+    
+    
+    
+    
+    
+    
     </wb-module>
+                                                                                                                                                                
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
 </project-modules>

.settings/org.eclipse.wst.common.project.facet.core.xml

@@ -1,8 +1,8 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <faceted-project>
   <fixed facet="wst.jsdt.web"/>
-  <installed facet="java" version="1.8"/>
-  <installed facet="jst.web" version="3.0"/>
   <installed facet="jst.jaxrs" version="2.0"/>
   <installed facet="wst.jsdt.web" version="1.0"/>
+  <installed facet="jst.web" version="4.0"/>
+  <installed facet="java" version="17"/>
 </faceted-project>

CHANGELOG.md

@@ -0,0 +1,78 @@
+# Changelog for "storagehub"
+
+All notable changes to this project will be documented in this file.
+This project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
+
+## [v2.0.1-SNAPSHOT]
+- improved enunciate api-docs
+- added sphinx docs
+- incident solved [#28539]
+- @Produces added/improved in some cases
+- removed content-type constraint on group admin delete
+- removed DocsManager, docs are now served by the default Tomcat servlet
+- project structure refactored with docs in "standard" locations
+
+## [v2.0.0]
+
+ - ceph as default storage
+ - vre folders can define specific bucket as backend
+ - enunciate docs
+ - dockerization of the service 
+
+## [v1.4.0] 2021-10-07
+
+- slow query removed from VRE retrieving and recents
+- incident solved [#22184]
+
+## [v1.3.2] - [2021-09-28]
+- fix 22087
+
+## [v1.3.1] - [2021-09-08]
+
+- solved bug on attachment rights
+
+## [v1.3.0] - [2021-03-31]
+
+possibility to impersonate people added
+
+## [v1.2.5] - [2021-03-11]
+
+use of query (indexes are not working well in jackrabbit) to retrieve shared folder removed on delete user 
+
+## [v1.2.4] - [2021-01-11]
+
+mimetype set also on non parsable pdf
+
+method add and remove admin on a VREFolder enabled also for admin role
+
+fixed bug on unsharing folder on user removal 
+
+added method exist user
+
+## [v1.2.2] - [2020-10-12]
+
+method for description update added
+
+## [v1.2.1] - [2020-06-20]
+
+bug on Archive uploader solved
+
+## [v1.2.0] - [2020-04-15]
+
+trash items changes owner on restore
+
+restore with new destination folder added
+
+move between shared and private or different shared folder enabled
+
+## [v1.0.8] - [2019-09-20]
+
+Bug on ushare owner fixed
+
+## [v1.0.5] - [2019-04-04]
+
+Active wait for lock in case of item creation added
+
+## [v1.0.0] - [2015-07-01]
+
+First commit

DOCKER-INSTRUCTION.md

@@ -0,0 +1,22 @@
+# Docker Instruction
+
+Instruction to generate e run storagehub docker image 
+
+## Dockerfile - DokerCompose
+
+This image is ready to be deployed in a new environment.
+The Dockerfile generate an image without configurations (container, service etc.), all the configurations must be provided at image start time.
+In fact the docker-compose.yml requires 3 environmental variables set at start time: APP_PORT, JACKRABBIT_FOLDER, CONTAINER_SERVICE_FILE_FOLDER.
+
+```
+APP_PORT=8080 JACKRABBIT_FOLDER=/data/jackrabbit CONTAINER_SERVICE_FILE_FOLDER=/etc/smartgears-config docker compose up
+```
+
+## Dockerfile - DokerCompose standalone
+
+The image generated from Dockerfile-standalone contains all the configuration to run on a fully isolated container.
+The docker-compose-standalone.yml contains the declaration of all the services needed (postgres and minio) teking all the configuration from the local ./docker folder
+
+```
+docker compose -f docker-compose-standalone.yml up
+```

Dockerfile

@@ -0,0 +1,3 @@
+FROM harbor.d4science.org/gcube/smartgears-distribution:4.0.1-SNAPSHOT-java17-tomcat10.1.19
+   COPY ./target/storagehub.war /tomcat/webapps/
+   COPY ./docker/storagehub.xml /tomcat/conf/Catalina/localhost/

Dockerfile-local

@@ -0,0 +1,13 @@
+FROM harbor.d4science.org/gcube/smartgears-distribution:4.0.0-SNAPSHOT-java17-tomcat10.1.19
+
+	#install unzip
+    RUN apt-get update && apt-get install unzip
+
+   COPY ./target/storagehub-test-storages.war /tomcat/webapps/storagehub.war
+   COPY ./docker/jackrabbit /app/jackrabbit
+   COPY ./docker/storagehub.xml /tomcat/conf/Catalina/localhost/
+   COPY ./docker/logback.xml /etc/
+   COPY ./docker/local/container.ini /etc/
+   RUN unzip /tomcat/webapps/storagehub.war -d /tomcat/webapps/storagehub
+   RUN rm /tomcat/webapps/storagehub.war
+   #COPY ./docker/local/storage-settings.properties /tomcat/webapps/storagehub/WEB-INF/classes/

Dockerfile-standalone

@@ -0,0 +1,11 @@
+FROM harbor.d4science.org/gcube/smartgears-distribution:4.0.0-SNAPSHOT-java17-tomcat10.1.19
+   # Install vim
+   RUN apt update && apt install -y vim
+
+   RUN mkdir -p /etc/config/storagehub
+   COPY ./target/storagehub.war /tomcat/webapps/
+   COPY ./docker/jackrabbit /app/jackrabbit
+   COPY ./docker/storagehub.xml /tomcat/conf/Catalina/localhost/
+   COPY ./docker/logback.xml /etc/
+   COPY ./docker/container.ini /etc/
+   COPY ./docker/storage-settings.properties /etc/config/storagehub/

FUNDING.md

@@ -0,0 +1,26 @@
+# Acknowledgments
+
+The projects leading to this software have received funding from a series of European Union programmes including:
+
+- the Sixth Framework Programme for Research and Technological Development
+    - [DILIGENT](https://cordis.europa.eu/project/id/004260) (grant no. 004260).
+- the Seventh Framework Programme for research, technological development and demonstration 
+    - [D4Science](https://cordis.europa.eu/project/id/212488) (grant no. 212488);
+    - [D4Science-II](https://cordis.europa.eu/project/id/239019) (grant no.239019);
+    - [ENVRI](https://cordis.europa.eu/project/id/283465) (grant no. 283465);
+    - [iMarine](https://cordis.europa.eu/project/id/283644) (grant no. 283644);
+    - [EUBrazilOpenBio](https://cordis.europa.eu/project/id/288754) (grant no. 288754).
+- the H2020 research and innovation programme 
+    - [SoBigData](https://cordis.europa.eu/project/id/654024) (grant no. 654024);
+    - [PARTHENOS](https://cordis.europa.eu/project/id/654119) (grant no. 654119);
+    - [EGI-Engage](https://cordis.europa.eu/project/id/654142) (grant no. 654142);
+    - [ENVRI PLUS](https://cordis.europa.eu/project/id/654182) (grant no. 654182);
+    - [BlueBRIDGE](https://cordis.europa.eu/project/id/675680) (grant no. 675680);
+    - [PerformFISH](https://cordis.europa.eu/project/id/727610) (grant no. 727610);
+    - [AGINFRA PLUS](https://cordis.europa.eu/project/id/731001) (grant no. 731001);
+    - [DESIRA](https://cordis.europa.eu/project/id/818194) (grant no. 818194);
+    - [ARIADNEplus](https://cordis.europa.eu/project/id/823914) (grant no. 823914);
+    - [RISIS 2](https://cordis.europa.eu/project/id/824091) (grant no. 824091);
+    - [EOSC-Pillar](https://cordis.europa.eu/project/id/857650) (grant no. 857650);
+    - [Blue Cloud](https://cordis.europa.eu/project/id/862409) (grant no. 862409);
+    - [SoBigData-PlusPlus](https://cordis.europa.eu/project/id/871042) (grant no. 871042);

LICENSE.md

@@ -1,4 +1,4 @@
-#European Union Public Licence V.1.1
+#European Union Public Licence V.1.2
 
 ##*EUPL © the European Community 2007*
 
@@ -12,7 +12,7 @@ The Original Work is provided under the terms of this Licence when the Licensor
 (as defined below) has placed the following notice immediately following the
 copyright notice for the Original Work:
 
-**Licensed under the EUPL V.1.1**
+**Licensed under the EUPL V.1.2**
 
 or has expressed by any other mean his willingness to license under the EUPL.
 

NODES-TO-REMOVE.txt

@@ -0,0 +1,155 @@
+// TO REMOVE
+[nthl:ExternalLink] > nthl:workspaceLeafItem
+   - hl:value (String) mandatory 
+   
+[nthl:externalUrl] > nthl:workspaceLeafItem 
+
+[nthl:query] > nthl:workspaceLeafItem
+ 	
+[nthl:aquamapsItem] > nthl:workspaceLeafItem
+
+[nthl:timeSeriesItem] > nthl:workspaceLeafItem
+
+[nthl:report] > nthl:workspaceLeafItem
+
+[nthl:reportTemplate] > nthl:workspaceLeafItem 
+
+[nthl:workflowReport] > nthl:workspaceLeafItem 
+
+[nthl:workflowTemplate] > nthl:workspaceLeafItem 
+
+[nthl:gCubeMetadata] > nthl:workspaceLeafItem
+ 
+[nthl:gCubeDocument] > nthl:workspaceLeafItem
+
+[nthl:gCubeDocumentLink] > nthl:workspaceLeafItem
+
+[nthl:gCubeImageDocumentLink] > nthl:workspaceLeafItem
+
+[nthl:gCubePDFDocumentLink] > nthl:workspaceLeafItem
+	
+[nthl:gCubeImageDocument] > nthl:workspaceLeafItem
+
+[nthl:gCubePDFDocument] > nthl:workspaceLeafItem
+
+[nthl:gCubeURLDocument] > nthl:workspaceLeafItem
+
+[nthl:gCubeAnnotation] > nthl:workspaceLeafItem
+
+[nthl:externalResourceLink] > nthl:workspaceLeafItem
+ 	
+[nthl:tabularDataLink] > nthl:workspaceLeafItem   
+
+[nthl:documentAlternativeLink] > nt:base
+	- hl:parentUri (String) mandatory
+	- hl:uri (String) mandatory
+	- hl:name (String) mandatory
+	- hl:mimeType (String) mandatory
+
+[nthl:documentPartLink] > nthl:documentAlternativeLink
+	 	  
+[nthl:documentItemContent] > nthl:workspaceLeafItemContent
+  	- hl:collectionName (String) mandatory
+	- hl:oid (String) mandatory  
+	+ hl:metadata (nt:unstructured)
+	= nt:unstructured
+	mandatory autocreated
+	+ hl:annotations (nt:unstructured)
+	= nt:unstructured
+	mandatory autocreated
+	+ hl:alternatives (nt:unstructured)
+	= nt:unstructured
+	mandatory autocreated
+	+ hl:parts (nt:unstructured)
+	= nt:unstructured
+	mandatory autocreated
+	
+[nthl:metadataItemContent] > nthl:workspaceLeafItemContent, nthl:file
+	- hl:schema (String) mandatory
+	- hl:language (String) mandatory
+	- hl:collectionName (String) mandatory
+	- hl:oid (String) mandatory
+	
+[nthl:annotationItemContet] > nthl:workspaceLeafItemContent
+	- hl:oid (String) mandatory
+	+ hl:annotations (nt:unstructured)
+	= nt:unstructured
+	mandatory autocreated
+	
+[nthl:queryItemContent] > nthl:workspaceLeafItemContent
+	- hl:query (String) mandatory
+	- hl:queryType (String) mandatory
+			 	
+[nthl:aquamapsItemContent] > nthl:workspaceLeafItemContent, nthl:file
+ 	- hl:mapName (String) mandatory
+	- hl:mapType (String) mandatory
+	- hl:author (String) mandatory 
+	- hl:numberOfSpecies (Long) mandatory
+	- hl:boundingBox (String) mandatory
+	- hl:PSOThreshold (Double) mandatory
+	- hl:numberOfImages (Long) mandatory
+	+ hl:images(nt:unstructured)
+	= nt:unstructured
+	mandatory autocreated
+	
+[nthl:timeSeriesItemContent] > nthl:workspaceLeafItemContent, nthl:file
+	- hl:id (String) mandatory
+	- hl:title (String) mandatory
+	- hl:description (String) mandatory
+	- hl:creator (String) mandatory
+	- hl:created (String) mandatory
+	- hl:publisher (String) mandatory
+	- hl:sourceId (String) mandatory
+	- hl:sourceName (String) mandatory
+	- hl:rights (String) mandatory
+	- hl:dimension (Long) mandatory
+	- hl:headerLabels (String) 	
+
+[nthl:reportItemContent] > nthl:workspaceLeafItemContent, nthl:file
+	- hl:created (Date) mandatory
+	- hl:lastEdit (Date) mandatory
+	- hl:author (String) mandatory
+	- hl:lastEditBy (String) mandatory
+	- hl:templateName (String) mandatory
+	- hl:numberOfSection (Long) mandatory
+	- hl:status (String) mandatory
+
+[nthl:reportTemplateContent] > nthl:workspaceLeafItemContent, nthl:file
+	- hl:created (Date) mandatory
+	- hl:lastEdit (Date) mandatory
+	- hl:author (String) mandatory
+	- hl:lastEditBy (String) mandatory
+	- hl:numberOfSection (Long) mandatory
+	- hl:status (String) mandatory
+
+[nthl:externalResourceLinkContent] > nthl:workspaceLeafItemContent
+	- hl:mimeType (String) 
+	- hl:size (long) mandatory
+	- hl:resourceId (String) mandatory
+	- hl:servicePlugin (String) mandatory
+	
+[nthl:tabularDataLinkContent] > nthl:workspaceLeafItemContent
+	- hl:tableID (String) mandatory
+	- hl:tableTemplateID (String) mandatory
+	- hl:provenance (String) mandatory
+	- hl:runtimeResourceID (String) mandatory
+	- hl:operator (String)
+	 	 		
+[nthl:smartFolderContent] > nt:base
+	- hl:query (String) mandatory
+	- hl:folderId (String)
+    
+[nthl:folderBulkCreator] > nt:base
+	- hl:folderId (String) mandatory
+	- hl:status (Long) 
+	= '0'
+	mandatory autocreated
+	- hl:failures (Long) 
+	= '0'
+	mandatory autocreated 
+	- hl:requests (Long) mandatory  
+
+[nthl:rootFolderBulkCreator] > nt:folder
+	+ * (nthl:folderBulkCreator)
+	= nthl:folderBulkCreator
+    

ToRemoveOnImport

@@ -0,0 +1,3 @@
+nodeType to remove on new import from a backup:
+externalUrl
+

buildImageAndStart.sh

@@ -0,0 +1,15 @@
+#!/bin/bash
+
+set -e
+
+NAME=storagehub
+PORT=8100
+DEBUG_PORT=5005
+debug=false
+compile=false
+
+mvn clean package
+
+docker compose -f docker-compose-standalone.yml build
+
+docker compose -f docker-compose-standalone.yml up

changelog.xml

@@ -1,14 +0,0 @@
-<ReleaseNotes>
-    <Changeset component="org.gcube.data-access.storagehub-webapp.1.0.8"
-		date="2019-09-20">
-		<Change>Bug on ushare owner fixed</Change>
-	</Changeset>
-    <Changeset component="org.gcube.data-access.storagehub-webapp.1.0.5"
-		date="2019-04-04">
-		<Change>Active wait for lock in case of item creation added</Change>
-	</Changeset>
-	<Changeset component="org.gcube.data-access.storagehub-webapp.1.0.0"
-		date="2015-07-01">
-		<Change>First commit</Change>
-	</Changeset>
-</ReleaseNotes>

descriptor.xml

@@ -1,32 +0,0 @@
-<assembly
-	xmlns="http://maven.apache.org/plugins/maven-assembly-plugin/assembly/1.1.0"
-	xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
-	xsi:schemaLocation="http://maven.apache.org/plugins/maven-assembly-plugin/assembly/1.1.0 http://maven.apache.org/xsd/assembly-1.1.0.xsd">
-	<id>servicearchive</id>
-	<formats>
-		<format>tar.gz</format>
-	</formats>
-	<baseDirectory>/</baseDirectory>
-		<fileSets>
-		<fileSet>
-			<directory>.</directory>
-			<outputDirectory>/</outputDirectory>
-			<useDefaultExcludes>true</useDefaultExcludes>
-			<includes>
-				<include>README.md</include>
-				<include>LICENSE.md</include>
-				<include>changelog.xml</include>
-                <include>profile.xml</include>
-			</includes>
-			<fileMode>755</fileMode>
-			<filtered>true</filtered>
-		</fileSet>
-	</fileSets>
-	<files>
-		<file>
-			<source>target/${build.finalName}.war</source>
-			<outputDirectory>/${artifactId}</outputDirectory>
-		</file>
-	</files>
-
-</assembly>

distro/LICENSE

@@ -1 +0,0 @@
-${gcube.license}

distro/README

@@ -1,66 +0,0 @@
-The gCube System - ${name}
---------------------------------------------------
- 
-${description}
- 
- 
-${gcube.description}
- 
-${gcube.funding}
- 
- 
-Version
---------------------------------------------------
- 
-${version} (${buildDate})
- 
-Please see the file named "changelog.xml" in this directory for the release notes.
- 
- 
-Authors
---------------------------------------------------
- 
-
-* Lucio Lelii (lucio.lelii-AT-isti.cnr.it), CNR Pisa, 
-  Istituto di Scienza e Tecnologie dell'Informazione "A. Faedo".
- 
-Maintainers
------------
- 
-
-* Lucio Lelii (lucio.lelii-AT-isti.cnr.it), CNR Pisa, 
-  Istituto di Scienza e Tecnologie dell'Informazione "A. Faedo". 
- 
-Download information
---------------------------------------------------
- 
-Source code is available from SVN: 
-    ${scm.url}
- 
-Binaries can be downloaded from the gCube website: 
-   ${gcube.website}
- 
- 
-Installation
---------------------------------------------------
- 
-Installation documentation is available on-line in the gCube Wiki:
-    ${gcube.wikiRoot}/Home_Library_2.0_API_Framework_Specification
- 
-Documentation 
---------------------------------------------------
- 
-Documentation is available on-line in the gCube Wiki:
-    ${gcube.wikiRoot}/StorageHub_API_Framework_Specification
- 
-Support 
---------------------------------------------------
- 
-Bugs and support requests can be reported in the gCube issue tracking tool:
-    ${gcube.issueTracking}
- 
- 
-Licensing
---------------------------------------------------
- 
-This software is licensed under the terms you may find in the file named "LICENSE" in this directory.

distro/gcube-app.xml

@@ -1,7 +0,0 @@
-<application mode='online'>
-		<name>StorageHub</name>
-		<group>DataAccess</group>
-		<version>1.0.0-SNAPSHOT</version>
-		<description>Storage Hub webapp</description>
-		<local-persistence location='target' />
-</application>

docker-compose-local.yml

@@ -0,0 +1,49 @@
+services:
+    elb:
+        image: haproxy
+        ports:
+            - "8100:8100"
+        volumes:
+            - ./docker/haproxy:/usr/local/etc/haproxy
+    postgres:
+        image: postgres:10.5
+        restart: always
+        environment:
+          - POSTGRES_DB=workspace-db
+          - POSTGRES_USER=ws-db-user
+          - POSTGRES_PASSWORD=dbPwd
+        logging:
+          options:
+            max-size: 10m
+            max-file: "3"
+        ports:
+          - '5423:5432'
+        volumes: 
+          - ./postgres-data:/var/lib/postgresql/data
+          - ./sql/create_tables.sql:/docker-entrypoint-initdb.d/create_tables.sql
+    storagehub: 	
+       build: 
+           dockerfile: ./Dockerfile-local
+       ports:
+         - '8080:8080' 
+         - '4954:4954'
+       environment:
+         - ADMINISTRATION_PORT_ENABLED=true
+         - DOMAIN_NAME=docker_domain
+         - JPDA_OPTS="-agentlib:jdwp=transport=dt_socket,address=0.0.0.0:4954,server=y,suspend=n" 
+         - JPDA_ADDRESS=*:4954	
+    minio:
+       image: minio/minio
+       ports:
+         - "9000:9000"
+         - "9001:9001"
+       volumes:
+         - minio_storage:/data
+       environment:
+         MINIO_ROOT_USER: SHUBTEST
+         MINIO_ROOT_PASSWORD: wJalrXUtnFEMI/K7MDENG/bPxRfiCY
+       command: server --console-address ":9001" /data
+
+volumes:
+  minio_storage: {}
+             

docker-compose-standalone.yml

@@ -0,0 +1,46 @@
+services:
+    postgres:
+        image: postgres:16.2
+        restart: always
+        environment:
+          - POSTGRES_DB=workspace-db
+          - POSTGRES_USER=ws-db-user
+          - POSTGRES_PASSWORD=dbPwd
+        logging:
+          options:
+            max-size: 10m
+            max-file: "3"
+        ports:
+          - '5423:5432'
+        volumes: 
+          - ./data/postgres-data:/var/lib/postgresql/data
+           copy the sql script to create tables
+           - ./data/sql/create_tables.sql:/docker-entrypoint-initdb.d/create_tables.sql
+    storagehub: 	
+       build: 
+            dockerfile: Dockerfile-standalone
+       environment:
+          _JAVA_OPTIONS:
+              -Xdebug
+              -agentlib:jdwp=transport=dt_socket,server=y,suspend=${SUSPEND:-n},address=*:5005  
+       ports:
+         - '8081:8080'
+         - '5005:5005'
+       volumes:
+         - /tmp:/tomcat/temp
+
+    minio:
+       image: minio/minio
+       ports:
+         - "9000:9000"
+         - "9001:9001"
+       volumes:
+         - minio_storage:/data
+       environment:
+         MINIO_ROOT_USER: SHUBTEST
+         MINIO_ROOT_PASSWORD: wJalrXUtnFEMI/K7MDENG/bPxRfiCY
+       command: server --console-address ":9001" /data
+
+volumes:
+  minio_storage: {}
+             

docker-compose.yml

@@ -0,0 +1,9 @@
+services:
+    storagehub: 	
+       image: d4science/storagehub:latest
+       ports:
+         - '${APP_PORT}:8080'
+       volumes:
+            - ${JACKRABBIT_FOLDER}:/app/jackrabbit
+            - ${SMARTGEARS_CONFIG_FOLDER}:/etc
+         

docker/container.ini

@@ -0,0 +1,23 @@
+[node]
+mode = offline
+hostname = dlib29.isti.cnr.it
+protocol= http
+port = 8080
+infrastructure = gcube
+authorizeChildrenContext = true
+publicationFrequencyInSeconds = 60
+
+[properties]
+SmartGearsDistribution = 4.0.0-SNAPSHOT
+SmartGearsDistributionBundle = UnBundled
+
+[site]
+country = it
+location = pisa
+
+[authorization]
+factory = org.gcube.smartgears.security.defaults.DefaultAuthorizationProviderFactory
+factory.endpoint = https://accounts.cloud-dev.d4science.org/auth/realms/d4science/protocol/openid-connect/token
+credentials.class = org.gcube.smartgears.security.SimpleCredentials
+credentials.clientID = node-whn-test-uno-d-d4s.d4science.org
+credentials.secret = 979bd3bc-5cc4-11ec-bf63-0242ac130002

docker/haproxy/haproxy.cfg

@@ -0,0 +1,18 @@
+# haproxy.cfg
+global
+    lua-load /usr/local/etc/haproxy/send_to_all_whnmanager.lua
+
+frontend http
+    bind *:8100
+    mode http
+    timeout client 10s
+    http-request use-service lua.broadcast_to_nodes if { path /whn-manager meth PUT DELETE  }
+    use_backend all
+
+backend all
+    mode http
+    option httpchk
+    http-check send meth GET  uri /storagehub/gcube/resource/health
+    http-check expect status 200    
+    server s1 storagehub:8080 check
+    

docker/haproxy/send_to_all_whnmanager.lua

@@ -0,0 +1,21 @@
+local function broadcast_to_nodes(req)
+    -- Get all servers in the backend
+    local servers = pxn.get_servers("all")
+
+    for _, server in ipairs(servers) do
+        -- Forward the request to each server
+        pxn.http_request({
+            "PUT",                         -- Method
+            server["address"],              -- Address of the server
+            tonumber(server["port"]),       -- Port of the server
+            req.method,                    -- HTTP method
+            req.uri,                       -- URI
+            req.headers,                   -- Headers
+            req.body                       -- Body
+        })
+    end
+        
+ end
+
+ core.register_service("broadcast_to_nodes", "http", broadcast_to_nodes)
+    

docker/jackrabbit/bootstrap.properties

@@ -0,0 +1,11 @@
+#bootstrap properties for the repository startup servlet.
+#Fri Jul 21 05:19:29 CEST 2017
+java.naming.factory.initial=org.apache.jackrabbit.core.jndi.provider.DummyInit$
+repository.home=jackrabbit
+rmi.enabled=true
+repository.config=jackrabbit/repository.xml
+repository.name=jackrabbit.repository
+rmi.host=localhost
+java.naming.provider.url=http\://www.apache.org/jackrabbit
+jndi.enabled=true
+rmi.port=0

docker/jackrabbit/repository.xml

@@ -0,0 +1,111 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!-- Licensed to the Apache Software Foundation (ASF) under one or more contributor 
+	license agreements. See the NOTICE file distributed with this work for additional 
+	information regarding copyright ownership. The ASF licenses this file to 
+	You under the Apache License, Version 2.0 (the "License"); you may not use 
+	this file except in compliance with the License. You may obtain a copy of 
+	the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required 
+	by applicable law or agreed to in writing, software distributed under the 
+	License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS 
+	OF ANY KIND, either express or implied. See the License for the specific 
+	language governing permissions and limitations under the License. -->
+<!DOCTYPE Repository PUBLIC "-//The Apache Software Foundation//DTD Jackrabbit 2.0//EN" "http://jackrabbit.apache.org/dtd/repository-2.0.dtd">
+<Repository>
+   <!-- virtual file system where the repository stores global state (e.g. 
+		registered namespaces, custom node types, etc.) -->
+   <FileSystem class="org.apache.jackrabbit.core.fs.db.DbFileSystem">
+      <param name="driver" value="org.postgresql.Driver" />
+      <param name="schema" value="postgresql" />
+      <param name="url" value="jdbc:postgresql://postgres:5432/workspace-db" />
+      <param name="user" value="ws-db-user" />
+      <param name="password" value="dbPwd" />
+      <param name="schemaObjectPrefix" value="rep_" />
+   </FileSystem>
+   <!-- data store configuration -->
+   <DataStore class="org.apache.jackrabbit.core.data.db.DbDataStore">
+      <param name="driver" value="org.postgresql.Driver" />
+      <param name="databaseType" value="postgresql" />
+      <param name="url" value="jdbc:postgresql://postgres:5432/workspace-db" />
+      <param name="user" value="ws-db-user" />
+      <param name="password" value="dbPwd" />
+      <param name="minRecordLength" value="1024" />
+      <param name="maxConnections" value="3" />
+      <param name="copyWhenReading" value="true" />
+      <param name="tablePrefix" value="datastore_" />
+      <param name="schemaObjectPrefix" value="" />
+   </DataStore>
+   <!-- security configuration -->
+   <Security appName="Jackrabbit">
+      <SecurityManager class="org.apache.jackrabbit.core.DefaultSecurityManager" />
+      <AccessManager class="org.apache.jackrabbit.core.security.DefaultAccessManager" />
+      <LoginModule class="org.apache.jackrabbit.core.security.authentication.DefaultLoginModule">
+         <param name="adminId" value="admin" />
+         <param name="adminPassword" value="admin" />
+      </LoginModule>
+   </Security>
+   <!-- location of workspaces root directory and name of default workspace -->
+   <Workspaces rootPath="${rep.home}/workspaces" defaultWorkspace="default" />
+   <Workspace name="${wsp.name}">
+      <FileSystem class="org.apache.jackrabbit.core.fs.local.LocalFileSystem">
+         <param name="path" value="${wsp.home}" />
+      </FileSystem>
+      <PersistenceManager class="org.apache.jackrabbit.core.persistence.pool.PostgreSQLPersistenceManager">
+         <param name="driver" value="org.postgresql.Driver" />
+         <param name="url" value="jdbc:postgresql://postgres:5432/workspace-db" />
+         <param name="schema" value="postgresql" />
+         <param name="user" value="ws-db-user" />
+         <param name="password" value="dbPwd" />
+         <param name="schemaObjectPrefix" value="pm_${wsp.name}_" />
+         <param name="bundleCacheSize" value="600" />
+         <param name="errorHandling" value="IGNORE_MISSING_BLOBS" />
+         <param name="consistencyFix" value="false" />
+         <param name="consistencyCheck" value="false" />
+      </PersistenceManager>
+      <!-- Search index and the file system it uses. class: FQN of class implementing 
+			the QueryHandler interface -->
+      <SearchIndex class="org.apache.jackrabbit.core.query.lucene.SearchIndex">
+         <param name="path" value="${wsp.home}/index" />
+         <param name="supportHighlighting" value="true" />
+         <param name="autoRepair" value="true" />
+         <param name="onWorkspaceInconsistency" value="log" />
+         <param name="indexingConfiguration" value="${rep.home}/indexing_configuration.xml" />
+         <param name="resultFetchSize" value="50" />
+         <param name="cacheSize" value="100000" />
+         <param name="enableConsistencyCheck" value="false" />
+         <param name="forceConsistencyCheck" value="false" />
+      </SearchIndex>
+   </Workspace>
+   <!-- Configures the versioning -->
+   <Versioning rootPath="${rep.home}/version">
+      <!-- Configures the filesystem to use for versioning for the respective 
+			persistence manager -->
+      <FileSystem class="org.apache.jackrabbit.core.fs.local.LocalFileSystem">
+         <param name="path" value="${rep.home}/version" />
+      </FileSystem>
+      <PersistenceManager class="org.apache.jackrabbit.core.persistence.pool.PostgreSQLPersistenceManager">
+         <param name="driver" value="org.postgresql.Driver" />
+         <param name="url" value="jdbc:postgresql://postgres:5432/workspace-db" />
+         <param name="schema" value="postgresql" />
+         <param name="user" value="ws-db-user" />
+         <param name="password" value="dbPwd" />
+         <param name="schemaObjectPrefix" value="pm_version_" />
+         <param name="bundleCacheSize" value="600" />
+         <param name="consistencyFix" value="false" />
+         <param name="consistencyCheck" value="false" />
+      </PersistenceManager>
+   </Versioning>
+   <!-- Cluster configuration -->
+   <!--  Cluster id="storagehub1.d4science.org" syncDelay="2000">
+      <Journal class="org.apache.jackrabbit.core.journal.DatabaseJournal">
+         <param name="driver" value="org.postgresql.Driver" />
+         <param name="url" value="jdbc:postgresql://postgres/workspace-db" />
+         <param name="databaseType" value="postgresql" />
+         <param name="schemaObjectPrefix" value="journal_" />
+         <param name="user" value="ws-db-user" />
+         <param name="password" value="dbPwd" />
+         <param name="revision" value="${rep.home}/revision.log" />
+         <param name="janitorEnabled" value="false"/> 
+         <set to true if you want to daily clean the journal table  https://wiki.apache.org/jackrabbit/Clustering#Removing_Old_Revisions>
+      </Journal>
+   </Cluster > -->
+</Repository>

docker/local/container.ini

@@ -0,0 +1,23 @@
+[node]
+mode = offline
+hostname = dlib29.isti.cnr.it
+protocol= http
+port = 8080
+infrastructure = gcube
+authorizeChildrenContext = true
+publicationFrequencyInSeconds = 60
+
+[properties]
+SmartGearsDistribution = 4.0.0-SNAPSHOT
+SmartGearsDistributionBundle = UnBundled
+
+[site]
+country = it
+location = pisa
+
+[authorization]
+factory = org.gcube.smartgears.security.defaults.DefaultAuthorizationProviderFactory
+factory.endpoint = https://accounts.dev.d4science.org/auth/realms/d4science/protocol/openid-connect/token
+credentials.class = org.gcube.smartgears.security.SimpleCredentials
+credentials.clientID = node-whn-test-uno-d-d4s.d4science.org
+credentials.secret = 979bd3bc-5cc4-11ec-bf63-0242ac130002

docker/local/storage-settings.properties

@@ -0,0 +1,10 @@
+default.bucketName = storagehub-dev
+default.key = SHUBTEST
+default.secret = wJalrXUtnFEMI/K7MDENG/bPxRfiCY
+default.url = minio:9000 
+default.createBucket = true
+volatile.bucketName = storagehub-volatile-dev
+volatile.key = SHUBTEST
+volatile.secret = wJalrXUtnFEMI/K7MDENG/bPxRfiCY
+volatile.url = minio:9000
+volatile.createBucket = true

docker/logback.xml

@@ -0,0 +1,31 @@
+<configuration scan="true" debug="true">
+
+	<appender name="STDOUT" class="ch.qos.logback.core.ConsoleAppender">
+		<encoder>
+			<pattern>%d{HH:mm:ss.SSS} [%thread] %-5level %logger{36} - %msg%n</pattern>
+		</encoder>
+	</appender>
+	<appender name="FILE" class="ch.qos.logback.core.FileAppender">
+		<file>storagehub.log</file>
+		<encoder>
+			<pattern>%d{HH:mm:ss.SSS} [%thread] %-5level %logger{36} - %msg%n</pattern>
+		</encoder>
+	</appender>
+
+
+	<logger name="org.gcube" level="DEBUG" />
+	<logger name="org.gcube.smartgears" level="TRACE" />
+	<logger name="org.gcube.smartgears.handlers" level="TRACE" />
+	<logger name="org.gcube.common.events" level="WARN" />
+	<logger name="org.gcube.data.publishing" level="ERROR" />
+	<logger name="org.gcube.documentstore" level="ERROR" />
+	<logger name="org.gcube.common.core.publisher.is.legacy" level="TRACE" />
+	<logger name="org.gcube.data.access" level="TRACE" />
+	<logger name="org.gcube.data.access.storagehub.handlers" level="DEBUG" />
+
+	<root level="WARN">
+		<appender-ref ref="STDOUT" />
+		<appender-ref ref="FILE" />
+	</root>
+
+</configuration>

docker/properties

@@ -0,0 +1,6 @@
+${{adminId}}=workspace
+${{adminPwd}}=gcube
+${{db-host}}=postgres
+${{ws-db}}=workspace-db
+${{dbUser}}=ws-db-user
+${{dbPwd}}=dbPwd

docker/storage-settings.properties

@@ -0,0 +1,10 @@
+default.bucketName=storagehub-dev
+default.key=SHUBTEST
+default.secret=wJalrXUtnFEMI/K7MDENG/bPxRfiCY
+default.url=http://minio:9000/
+default.createBucket=true
+volatile.bucketName=storagehub-volatile-dev
+volatile.key=SHUBTEST
+volatile.secret=wJalrXUtnFEMI/K7MDENG/bPxRfiCY
+volatile.url=http://minio:9000/
+volatile.createBucket=true

docker/storagehub.xml

@@ -0,0 +1,10 @@
+<Context path="/storagehub">
+     <Resource 
+    name="jcr/repository"
+    auth="Container"
+    type="javax.jcr.Repository"
+    factory="org.apache.jackrabbit.core.jndi.BindableRepositoryFactory"
+    configFilePath="/app/jackrabbit/repository.xml"
+    repHomeDir="/app/jackrabbit/workspaces"
+        />
+</Context>

documentation/enunciate/enunciate.xml

@@ -0,0 +1,41 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<enunciate
+	xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
+	xsi:noNamespaceSchemaLocation="http://enunciate.webcohesion.com/schemas/enunciate-2.18.0.xsd">
+	<description>
+		<![CDATA[
+			<h1>StorageHUB</h1>
+			<p>StorageHUB is the service implementing the gCube Workspace feature.</p> 
+			<p>It provides an intermediate layer between the storage and the services 
+			willing to access it.</p> 
+		]]>
+	</description>
+	<code-license>This project is licensed under the EUPL V.1.1 License - see the LICENSE.md file for details.</code-license>
+
+	<modules>
+		<gwt-json-overlay disabled="true" />
+		<php-json-client disabled="true" />
+		<ruby-json-client disabled="true" />
+		<java-json-client disabled="true" />
+		<javascript-client disabled="true" />
+		<java-xml-client disabled="true" />
+		<jaxb disabled="true" />
+		<jaxws disabled="true" />
+
+		<c-xml-client disabled="true" />
+		<csharp-xml-client disabled="true" />
+		<obj-c-xml-client disabled="true" />
+		<php-xml-client disabled="true" />
+		<spring-webnt disabled="true" />
+
+		<jaxrs groupBy="class" disableExamples="false" path-sort-strategy="depth_first" />
+		<swagger basePath="/workspace" />
+
+		<docs docsDir="${project.build.directory}" docsSubdir="api-docs" />
+		<docs
+			freemarkerTemplate="${project.basedir}/src/main/resources/META-INF/enunciate/d4science_docs.fmt">
+			<additional-css file="css/d4science_enunciate_custom.css" />
+		</docs>
+
+	</modules>	
+</enunciate>

documentation/sphinx/Makefile

@@ -0,0 +1,20 @@
+# Minimal makefile for Sphinx documentation
+#
+
+# You can set these variables from the command line, and also
+# from the environment for the first two.
+SPHINXOPTS    ?=
+SPHINXBUILD   ?= sphinx-build
+SOURCEDIR     = .
+BUILDDIR      = _build
+
+# Put it first so that "make" without argument is like "make help".
+help:
+	@$(SPHINXBUILD) -M help "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O)
+
+.PHONY: help Makefile
+
+# Catch-all target: route all unknown targets to Sphinx using the new
+# "make mode" option.  $(O) is meant as a shortcut for $(SPHINXOPTS).
+%: Makefile
+	@$(SPHINXBUILD) -M $@ "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O)

documentation/sphinx/conf.py

@@ -0,0 +1,58 @@
+# Configuration file for the Sphinx documentation builder.
+#
+# This file only contains a selection of the most common options. For a full
+# list see the documentation:
+# https://www.sphinx-doc.org/en/master/usage/configuration.html
+
+# -- Path setup --------------------------------------------------------------
+
+# If extensions (or modules to document with autodoc) are in another directory,
+# add these directories to sys.path here. If the directory is relative to the
+# documentation root, use os.path.abspath to make it absolute, like shown here.
+#
+# import os
+# import sys
+# sys.path.insert(0, os.path.abspath('.'))
+
+
+# -- Project information -----------------------------------------------------
+
+project = 'StorageHub'
+copyright = '2024, Lucio Lelii, Biagio Peccerillo'
+author = 'Lucio Lelii, Biagio Peccerillo'
+
+# The full version, including alpha/beta/rc tags
+release = '2.0.1'
+
+
+# -- General configuration ---------------------------------------------------
+
+source_suffix = {
+    '.rst': 'restructuredtext',
+}
+
+# Add any Sphinx extension module names here, as strings. They can be
+# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
+# ones.
+extensions = []
+
+# Add any paths that contain templates here, relative to this directory.
+templates_path = ['_templates']
+
+# List of patterns, relative to source directory, that match files and
+# directories to ignore when looking for source files.
+# This pattern also affects html_static_path and html_extra_path.
+exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store']
+
+
+# -- Options for HTML output -------------------------------------------------
+
+# The theme to use for HTML and HTML Help pages.  See the documentation for
+# a list of builtin themes.
+#
+html_theme = 'sphinx_rtd_theme'
+
+# Add any paths that contain custom static files (such as style sheets) here,
+# relative to this directory. They are copied after the builtin static files,
+# so a file named "default.css" will overwrite the builtin "default.css".
+html_static_path = ['_static']

documentation/sphinx/index.rst

@@ -0,0 +1,8 @@
+Welcome to StorageHub's documentation!
+======================================
+
+.. toctree::
+   :maxdepth: 2
+   :caption: Contents:
+
+   intro.rst

documentation/sphinx/intro.rst

@@ -0,0 +1,98 @@
+Introduction
+============
+
+StorageHub is a versatile service designed to provide seamless access
+to various storage resources, ensuring data persistence and management. It acts
+as an intermediary layer that can interface with any underlying storage
+solution, such as Amazon S3 or MongoDB, offering a unified and flexible approach
+to storage management.
+
+Base URL
+--------
+
+In the production environment, its current value is https://api.d4science.org/
+
+Key Features
+------------
+
+Flexibility and Integration
+~~~~~~~~~~~~~~~~~~~~~~~~~~~
+
+StorageHub is designed to be highly flexible, allowing it to serve as an
+intermediate layer for diverse storage solutions. This flexibility ensures that
+it can adapt to different storage backends without requiring significant changes
+to the applications that rely on it.
+
+RESTful Interface
+~~~~~~~~~~~~~~~~~
+
+StorageHub exposes a RESTful API, which allows any application capable of making
+HTTP requests to access it. This REST interface provides a standardized way to
+interact with the storage resources, enabling easy integration with various
+applications and services. See the available REST-API on `StorageHub API docs
+<../api-docs/index.html>`_.
+
+Metadata Management
+~~~~~~~~~~~~~~~~~~~
+
+StorageHub leverages a JackRabbit-based object store to manage all metadata
+associated with the stored data. This ensures that metadata is efficiently
+organized and easily retrievable, enhancing the overall data management
+capabilities of the service.
+
+Direct Payload Storage
+~~~~~~~~~~~~~~~~~~~~~~
+
+While metadata is handled by JackRabbit, the actual data payloads are stored
+directly on the underlying storage solutions. This approach optimizes storage
+efficiency and performance, ensuring that large data payloads are managed
+effectively.
+
+Primary Use Cases
+-----------------
+
+Workspace
+~~~~~~~~~
+
+The main application that interacts with StorageHub is the Workspace portlet,
+which is easily accessible from the Virtual Research Environments (VREs). The
+Workspace provides a "standard" HTML interface where users can perform all the
+common operations available in a file system, such as creating, reading,
+updating, and deleting files and directories.
+
+In addition to these standard file system operations, the Workspace offers
+features that are specific to VREs. These include publishing on the Catalogue,
+sharing resources with other users, and managing versions of files. These
+capabilities make the Workspace a versatile tool for managing data within the
+VREs, leveraging the services provided by StorageHub.
+
+Java Client
+~~~~~~~~~~~
+
+The methods of the Web Service can be called by writing your own REST client
+application or by using already existing REST client plugins.
+
+In case of a Java client, we provide the StorageHub Client Library, which is a
+Java library designed to facilitate seamless interaction with StorageHub. It
+abstracts the complexities of the REST API, providing a more intuitive and
+convenient interface for Java developers.
+
+The StorageHub Client Library allows developers to easily integrate StorageHub's
+capabilities into their applications without dealing with the intricacies of
+HTTP requests and responses. The library handles all the necessary communication
+with StorageHub, allowing developers to focus on their application's core
+functionality.
+
+.. tip:: If you're coding in Java, it is recommended that you include the
+   StorageHub Client Library into your project.
+
+Authorization
+-------------
+
+D4Science adopts state-of-the-art industry standards for authentication and
+authorization. Specifically, the implementation fully adopts `OIDC (OpenID
+Connect) <https://openid.net/connect>`_ for authentication and UMA 2 (User
+Managed Authorization) for authorization flows. `JSON Web Token (JWT) Access
+token <https://jwt.io/>`_ are used for both authentication and authorization.
+
+Obtain your Bearer token here: https://dev.d4science.org/how-to-access-resources

documentation/sphinx/make.bat

@@ -0,0 +1,35 @@
+@ECHO OFF
+
+pushd %~dp0
+
+REM Command file for Sphinx documentation
+
+if "%SPHINXBUILD%" == "" (
+	set SPHINXBUILD=sphinx-build
+)
+set SOURCEDIR=.
+set BUILDDIR=_build
+
+if "%1" == "" goto help
+
+%SPHINXBUILD% >NUL 2>NUL
+if errorlevel 9009 (
+	echo.
+	echo.The 'sphinx-build' command was not found. Make sure you have Sphinx
+	echo.installed, then set the SPHINXBUILD environment variable to point
+	echo.to the full path of the 'sphinx-build' executable. Alternatively you
+	echo.may add the Sphinx directory to PATH.
+	echo.
+	echo.If you don't have Sphinx installed, grab it from
+	echo.https://www.sphinx-doc.org/
+	exit /b 1
+)
+
+%SPHINXBUILD% -M %1 %SOURCEDIR% %BUILDDIR% %SPHINXOPTS% %O%
+goto end
+
+:help
+%SPHINXBUILD% -M help %SOURCEDIR% %BUILDDIR% %SPHINXOPTS% %O%
+
+:end
+popd

gcube/extra-resources/WEB-INF/application.yaml

@@ -0,0 +1,7 @@
+name: StorageHub
+group: DataAccess
+version: ${version}
+description: ${description}
+excludes:
+  - path: /workspace/api-docs/*
+  - path: /workspace/docs/*

gcube/extra-resources/WEB-INF/beans.xml

@@ -0,0 +1,18 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+    Copyright (c) 2013, 2022 Oracle and/or its affiliates. All rights reserved.
+
+    This program and the accompanying materials are made available under the
+    terms of the Eclipse Distribution License v. 1.0, which is available at
+    http://www.eclipse.org/org/documents/edl-v10.php.
+
+    SPDX-License-Identifier: BSD-3-Clause
+
+-->
+<beans xmlns="https://jakarta.ee/xml/ns/jakartaee"
+       xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
+       xsi:schemaLocation="https://jakarta.ee/xml/ns/jakartaee https://jakarta.ee/xml/ns/jakartaee/beans_4_0.xsd"
+       version="4.0" bean-discovery-mode="all">
+
+</beans>

gcube/extra-resources/WEB-INF/web.xml

@@ -0,0 +1,39 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<web-app>
+	<context-param>
+		<param-name>admin-username</param-name>
+		<param-value>admin</param-value>
+	</context-param>
+	<context-param>
+		<param-name>resolver-basepath</param-name>
+		<param-value>https://data-d.d4science.org/shub</param-value>
+	</context-param>
+	<servlet>
+		<servlet-name>org.gcube.data.access.storagehub.StorageHub</servlet-name>
+	</servlet>
+    <servlet-mapping>
+		<servlet-name>default</servlet-name>
+		<url-pattern>/workspace/docs/*</url-pattern>
+	</servlet-mapping>
+    <servlet-mapping>
+		<servlet-name>default</servlet-name>
+		<url-pattern>/workspace/api-docs/*</url-pattern>
+	</servlet-mapping>
+	<servlet-mapping>
+		<servlet-name>org.gcube.data.access.storagehub.StorageHub</servlet-name>
+		<url-pattern>/workspace/*</url-pattern>
+	</servlet-mapping>
+
+	<filter>
+    	<filter-name>DocsRedirectFilter</filter-name>
+    	<filter-class>org.gcube.data.access.storagehub.DocsRedirectFilter</filter-class>
+	</filter>
+	<filter-mapping>
+    	<filter-name>DocsRedirectFilter</filter-name>
+ 		<url-pattern>/workspace/docs</url-pattern>
+ 		<url-pattern>/workspace/docs/</url-pattern>
+ 		<url-pattern>/workspace/api-docs</url-pattern>
+ 		<url-pattern>/workspace/api-docs/</url-pattern>
+	</filter-mapping>
+
+</web-app>

pom.xml

@@ -1,139 +1,121 @@
 <project xmlns="http://maven.apache.org/POM/4.0.0"
 	xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
 	xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
-
 	<parent>
 		<artifactId>maven-parent</artifactId>
 		<groupId>org.gcube.tools</groupId>
-		<version>1.1.0</version>
+		<version>1.2.0</version>
 		<relativePath />
 	</parent>
-
 	<modelVersion>4.0.0</modelVersion>
 	<groupId>org.gcube.data.access</groupId>
 	<artifactId>storagehub</artifactId>
-	<version>1.0.8</version>
+	<version>2.0.1-SNAPSHOT</version>
 	<name>storagehub</name>
-
 	<scm>
-		<connection>scm:git:https://code-repo.d4science.org/gCubeSystem/storagehub.git</connection>
+		<connection>
-		<developerConnection>scm:git:https://code-repo.d4science.org/gCubeSystem/storagehub.git</developerConnection>
+			scm:git:https://code-repo.d4science.org/gCubeSystem/storagehub.git</connection>
+		<developerConnection>
+			scm:git:https://code-repo.d4science.org/gCubeSystem/storagehub.git</developerConnection>
 		<url>https://code-repo.d4science.org/gCubeSystem/storagehub</url>
 	</scm>
-
-
 	<packaging>war</packaging>
-
 	<properties>
 		<webappDirectory>${project.basedir}/src/main/webapp/WEB-INF</webappDirectory>
-		<jackrabbit.version>2.16.0</jackrabbit.version>
+		<jackrabbit.version>2.22.0</jackrabbit.version>
-		<tomcat.version>7.0.40</tomcat.version>
+		<jackson.version>2.15.3</jackson.version>
-		<jetty.version>6.1.26</jetty.version>
+		<slf4j.version>2.0.12</slf4j.version>
-		<tika.version>1.21</tika.version>
+		<tika.version>2.6.0</tika.version>
-		<slf4j.api.version>1.6.6</slf4j.api.version>
+		<aspectj-plugin.version>1.14.0</aspectj-plugin.version>
-		<slf4j.version>1.7.4</slf4j.version> <!-- sync with logback version -->
-		<logback.version>1.0.12</logback.version>
-
 		<distroDirectory>${project.basedir}/distro</distroDirectory>
 		<description>REST web service for Jackrabbit</description>
 		<warname>storagehub</warname>
 		<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
 		<project.reporting.outputEncoding>UTF-8</project.reporting.outputEncoding>
-
+		<enunciate.version>2.18.1</enunciate.version>
+		<maven.compiler.source>17</maven.compiler.source>
+		<maven.compiler.target>17</maven.compiler.target>
+		<java_version>17</java_version>
 	</properties>
-
 	<dependencyManagement>
 		<dependencies>
 			<dependency>
 				<groupId>org.gcube.distribution</groupId>
-				<artifactId>maven-smartgears-bom</artifactId>
+				<artifactId>gcube-smartgears-bom</artifactId>
-				<version>LATEST</version>
+				<version>4.0.1-SNAPSHOT</version>
 				<type>pom</type>
 				<scope>import</scope>
 			</dependency>
-			<dependency>
-				<groupId>org.aspectj</groupId>
-				<artifactId>aspectjrt</artifactId>
-				<version>1.8.2</version>
-			</dependency>
 		</dependencies>
+		<!-- https://mvnrepository.com/artifact/org.apache.tika/tika-parsers -->
 	</dependencyManagement>
-
 	<dependencies>
-
 		<dependency>
 			<groupId>org.aspectj</groupId>
 			<artifactId>aspectjrt</artifactId>
 		</dependency>
-
 		<dependency>
 			<groupId>org.gcube.core</groupId>
 			<artifactId>common-smartgears</artifactId>
 		</dependency>
-
+		<dependency>
+			<groupId>org.gcube.core</groupId>
+			<artifactId>common-smartgears-app</artifactId>
+		</dependency>
 		<dependency>
 			<groupId>org.gcube.common</groupId>
 			<artifactId>authorization-control-library</artifactId>
-			<version>[1.0.0-SNAPSHOT,2.0.0-SNAPSHOT)</version>
 		</dependency>
-
 		<dependency>
 			<groupId>org.gcube.common</groupId>
 			<artifactId>common-authorization</artifactId>
 		</dependency>
-
 		<dependency>
 			<groupId>org.gcube.core</groupId>
 			<artifactId>common-encryption</artifactId>
 		</dependency>
-
 		<dependency>
 			<groupId>org.gcube.core</groupId>
 			<artifactId>common-scope-maps</artifactId>
 		</dependency>
-
 		<dependency>
 			<groupId>org.gcube.core</groupId>
 			<artifactId>common-scope</artifactId>
 		</dependency>
-
-		<dependency>
-			<groupId>org.gcube.core</groupId>
-			<artifactId>common-encryption</artifactId>
-		</dependency>
-
 		<dependency>
 			<groupId>org.gcube.common</groupId>
 			<artifactId>storagehub-model</artifactId>
-			<version>[1.0.0-SNAPSHOT,2.0.0-SNAPSHOT)</version>
 		</dependency>
-
+		<dependency>
+			<groupId>org.gcube.data.access</groupId>
+			<artifactId>storagehub-script-utils</artifactId>
+			<version>[2.0.0-SNAPSHOT,3.0.0)</version>
+		</dependency>
+		<dependency>
+			<groupId>org.projectlombok</groupId>
+			<artifactId>lombok</artifactId>
+		</dependency>
 		<dependency>
 			<groupId>com.itextpdf</groupId>
 			<artifactId>itextpdf</artifactId>
-			<version>5.5.13.1</version>
+			<version>5.5.13.2</version>
 		</dependency>
-
 		<!-- https://mvnrepository.com/artifact/org.bouncycastle/bcprov-jdk15on -->
 		<dependency>
 			<groupId>org.bouncycastle</groupId>
 			<artifactId>bcprov-jdk15on</artifactId>
 			<version>1.62</version>
 		</dependency>
-
 		<dependency>
 			<groupId>org.slf4j</groupId>
 			<artifactId>slf4j-api</artifactId>
 		</dependency>
-
 		<dependency>
 			<groupId>org.gcube.common</groupId>
 			<artifactId>gxJRS</artifactId>
-			<version>[1.0.0-SNAPSHOT, 2.0.0-SNAPSHOT)</version>
 		</dependency>
 
 		<!-- JCR dependencies -->
-
 		<dependency>
 			<groupId>javax.jcr</groupId>
 			<artifactId>jcr</artifactId>
@@ -142,151 +124,159 @@
 		<dependency>
 			<groupId>org.apache.jackrabbit</groupId>
 			<artifactId>jackrabbit-api</artifactId>
-			<version>${jackrabbit.version}</version>
+			<version>2.19.3</version>
 		</dependency>
 		<dependency>
 			<groupId>org.apache.jackrabbit</groupId>
 			<artifactId>jackrabbit-core</artifactId>
 			<version>${jackrabbit.version}</version>
 		</dependency>
-		<dependency>
+
-			<groupId>org.apache.jackrabbit</groupId>
+
+		<!-- <dependency> <groupId>org.apache.jackrabbit</groupId>
 		<artifactId>jackrabbit-jcr-server</artifactId> 
-			<version>${jackrabbit.version}</version>
+			<version>${jackrabbit.version}</version> </dependency> -->
-		</dependency>
-
-		<!-- https://mvnrepository.com/artifact/org.apache.tika/tika-parsers -->
 		<dependency>
-			<groupId>org.apache.tika</groupId>
+			<groupId>com.fasterxml.jackson.core</groupId>
-			<artifactId>tika-parsers</artifactId>
+			<artifactId>jackson-annotations</artifactId>
-			<version>1.21</version>
+			<version>${jackson.version}</version>
+		</dependency>
+		<dependency>
+			<groupId>com.fasterxml.jackson.core</groupId>
+			<artifactId>jackson-core</artifactId>
+			<version>${jackson.version}</version>
+		</dependency>
+		<dependency>
+			<groupId>com.fasterxml.jackson.core</groupId>
+			<artifactId>jackson-databind</artifactId>
+			<version>${jackson.version}</version>
 		</dependency>
-
 		<!-- https://mvnrepository.com/artifact/org.apache.tika/tika-core -->
 		<dependency>
 			<groupId>org.apache.tika</groupId>
 			<artifactId>tika-core</artifactId>
-			<version>1.21</version>
+			<version>${tika.version}</version>
 		</dependency>
-
-
-		<!-- jersey -->
 		<dependency>
-			<groupId>javax.ws.rs</groupId>
+			<groupId>org.apache.tika</groupId>
-			<artifactId>javax.ws.rs-api</artifactId>
+			<artifactId>tika-parsers-standard-package</artifactId>
-			<version>2.0</version>
+			<version>${tika.version}</version>
+		</dependency>
+		<!-- needed to manage strange image types -->
+		<dependency>
+			<groupId>com.twelvemonkeys.imageio</groupId>
+			<artifactId>imageio-jpeg</artifactId>
+			<version>3.3.2</version>
+		</dependency>
+		<dependency>
+			<groupId>com.twelvemonkeys.imageio</groupId>
+			<artifactId>imageio-bmp</artifactId>
+			<version>3.3.2</version>
+		</dependency>
+		<dependency>
+			<groupId>com.twelvemonkeys.imageio</groupId>
+			<artifactId>imageio-core</artifactId>
+			<version>3.3.2</version>
+		</dependency>
+		<!-- jersey & weld -->
+		<dependency>
+			<groupId>jakarta.servlet</groupId>
+			<artifactId>jakarta.servlet-api</artifactId>
+		</dependency>
+		<!--
+		https://mvnrepository.com/artifact/javax.interceptor/javax.interceptor-api -->
+		<dependency>
+			<groupId>jakarta.interceptor</groupId>
+			<artifactId>jakarta.interceptor-api</artifactId>
+			<version>2.0.1</version>
+		</dependency>
+		<dependency>
+			<groupId>jakarta.enterprise</groupId>
+			<artifactId>jakarta.enterprise.cdi-api</artifactId>
+			<version>4.0.1</version>
+		</dependency>
+		<dependency>
+			<groupId>jakarta.ws.rs</groupId>
+			<artifactId>jakarta.ws.rs-api</artifactId>
 		</dependency>
 		<dependency>
 			<groupId>org.glassfish.jersey.containers</groupId>
 			<artifactId>jersey-container-servlet</artifactId>
-			<version>2.13</version>
 		</dependency>
 		<dependency>
-			<groupId>org.glassfish.jersey.containers.glassfish</groupId>
+			<groupId>org.glassfish.jersey.containers</groupId>
-			<artifactId>jersey-gf-cdi</artifactId>
+			<artifactId>jersey-container-servlet-core</artifactId>
-			<version>2.13</version>
 		</dependency>
-
+		<!--
+		https://mvnrepository.com/artifact/org.glassfish.jersey.inject/jersey-hk2 -->
 		<dependency>
-			<groupId>javax.transaction</groupId>
+			<groupId>org.glassfish.jersey.inject</groupId>
-			<artifactId>javax.transaction-api</artifactId>
+			<artifactId>jersey-hk2</artifactId>
-			<version>1.2</version>
 		</dependency>
 		<dependency>
-			<groupId>javax.servlet</groupId>
+			<groupId>org.glassfish.jersey.core</groupId>
-			<artifactId>javax.servlet-api</artifactId>
+			<artifactId>jersey-server</artifactId>
-			<version>3.0.1</version>
-			<scope>provided</scope>
 		</dependency>
-
-		<!-- weld -->
 		<dependency>
-			<groupId>javax.enterprise</groupId>
+			<groupId>org.glassfish.jersey.ext.cdi</groupId>
-			<artifactId>cdi-api</artifactId>
+			<artifactId>jersey-cdi1x</artifactId>
-			<version>1.1</version>
 		</dependency>
+		<dependency>
+			<groupId>org.glassfish.jersey.ext.cdi</groupId>
+			<artifactId>jersey-cdi1x-servlet</artifactId>
+		</dependency>
+		<!--
+		https://mvnrepository.com/artifact/org.jboss.weld.servlet/weld-servlet-core -->
 		<dependency>
 			<groupId>org.jboss.weld.servlet</groupId>
-			<artifactId>weld-servlet</artifactId>
+			<artifactId>weld-servlet-core</artifactId>
-			<version>2.2.10.Final</version>
+			<version>5.1.2.Final</version>
 		</dependency>
 
+		<!--
+		https://mvnrepository.com/artifact/org.glassfish.jersey.core/jersey-common -->
 		<dependency>
-			<groupId>org.jboss</groupId>
+			<groupId>org.glassfish.jersey.core</groupId>
-			<artifactId>jandex</artifactId>
+			<artifactId>jersey-common</artifactId>
-			<version>1.2.2.Final</version>
 		</dependency>
-
-		<dependency>
-			<groupId>com.fasterxml.jackson.jaxrs</groupId>
-			<artifactId>jackson-jaxrs-json-provider</artifactId>
-			<version>2.3.0</version>
-		</dependency>
-
 		<dependency>
 			<groupId>org.glassfish.jersey.media</groupId>
 			<artifactId>jersey-media-json-jackson</artifactId>
-			<version>2.13</version>
 		</dependency>
-
 		<dependency>
 			<groupId>org.glassfish.jersey.media</groupId>
 			<artifactId>jersey-media-multipart</artifactId>
-			<version>2.13</version>
 		</dependency>
-
-		<dependency>
-			<groupId>postgresql</groupId>
-			<artifactId>postgresql</artifactId>
-			<version>9.1-901.jdbc4</version>
-			<scope>runtime</scope>
-		</dependency>
-
-		<!-- Storage dependencies -->
-		<dependency>
-			<groupId>org.gcube.contentmanagement</groupId>
-			<artifactId>storage-manager-core</artifactId>
-			<version>[2.0.0-SNAPSHOT,3.0.0-SNAPSHOT)</version>
-		</dependency>
-
-		<dependency>
-			<groupId>org.gcube.contentmanagement</groupId>
-			<artifactId>storage-manager-wrapper</artifactId>
-			<version>[2.0.0-SNAPSHOT,3.0.0-SNAPSHOT)</version>
-		</dependency>
-
 		<dependency>
 			<groupId>org.reflections</groupId>
 			<artifactId>reflections</artifactId>
-			<version>0.9.10</version>
 		</dependency>
-
+		<!-- https://mvnrepository.com/artifact/org.postgresql/postgresql -->
+		<dependency>
+			<groupId>org.postgresql</groupId>
+			<artifactId>postgresql</artifactId>
+			<version>42.7.0</version>
+		</dependency>
 		<dependency>
 			<groupId>com.google.guava</groupId>
 			<artifactId>guava</artifactId>
 			<version>16.0</version>
 		</dependency>
-
 		<dependency>
 			<groupId>org.apache.commons</groupId>
 			<artifactId>commons-compress</artifactId>
-			<version>1.17</version>
+			<version>1.22</version>
 		</dependency>
-
 		<dependency>
 			<groupId>org.tukaani</groupId>
 			<artifactId>xz</artifactId>
 			<version>1.5</version>
 		</dependency>
-
-
 		<dependency>
 			<groupId>org.glassfish.jersey.test-framework.providers</groupId>
 			<artifactId>jersey-test-framework-provider-simple</artifactId>
-			<version>2.13</version>
 			<scope>test</scope>
 		</dependency>
-
 		<dependency>
 			<groupId>org.apache.derby</groupId>
 			<artifactId>derby</artifactId>
@@ -299,115 +289,103 @@
 			<version>10.8.2.2</version>
 			<scope>test</scope>
 		</dependency>
-
-		<dependency>
-			<groupId>com.googlecode.jeeunit</groupId>
-			<artifactId>jeeunit</artifactId>
-			<version>1.0.0</version>
-			<scope>test</scope>
-		</dependency>
 		<!-- https://mvnrepository.com/artifact/com.google.code.gson/gson -->
 		<dependency>
 			<groupId>com.google.code.gson</groupId>
 			<artifactId>gson</artifactId>
 			<version>2.7</version>
 		</dependency>
-
 		<dependency>
-			<groupId>ch.qos.logback</groupId>
+			<groupId>com.vlkan.rfos</groupId>
-			<artifactId>logback-classic</artifactId>
+			<artifactId>rotating-fos</artifactId>
-			<version>1.0.13</version>
+			<version>0.9.2</version>
-			<scope>test</scope>
 		</dependency>
-
-		<dependency>
-			<groupId>junit</groupId>
-			<artifactId>junit</artifactId>
-			<version>4.10</version>
-			<scope>test</scope>
-		</dependency>
-
-		<!-- https://mvnrepository.com/artifact/org.mockito/mockito-all -->
-		<dependency>
-			<groupId>org.mockito</groupId>
-			<artifactId>mockito-all</artifactId>
-			<version>1.9.5</version>
-			<scope>test</scope>
-		</dependency>
-
-
 		<dependency>
 			<groupId>org.slf4j</groupId>
 			<artifactId>jul-to-slf4j</artifactId>
 			<version>${slf4j.version}</version>
 		</dependency>
-
+		<!--
+		https://mvnrepository.com/artifact/org.apache.logging.log4j/log4j-to-slf4j -->
+		<!-- https://mvnrepository.com/artifact/org.slf4j/log4j-over-slf4j -->
 		<dependency>
-			<groupId>org.jboss.weld.se</groupId>
+			<groupId>org.slf4j</groupId>
-			<artifactId>weld-se</artifactId>
+			<artifactId>log4j-over-slf4j</artifactId>
-			<version>2.2.10.Final</version>
+			<version>2.0.7</version>
+		</dependency>
+		<!-- enunciate deps -->
+		<dependency>
+			<groupId>com.webcohesion.enunciate</groupId>
+			<artifactId>enunciate-core-annotations</artifactId>
+			<version>${enunciate.version}</version>
+			<scope>provided</scope>
+		</dependency>
+		<dependency>
+			<groupId>com.webcohesion.enunciate</groupId>
+			<artifactId>enunciate-rt-util</artifactId>
+			<version>${enunciate.version}</version>
+			<scope>provided</scope>
+		</dependency>
+		<!-- Storage dependencies -->
+		<dependency>
+			<groupId>org.gcube.contentmanagement</groupId>
+			<artifactId>storage-manager-core</artifactId>
+			<version>[4.0.0-SNAPSHOT,5.0.0-SNAPSHOT)</version>
+		</dependency>
+		<dependency>
+			<groupId>org.gcube.contentmanagement</groupId>
+			<artifactId>storage-manager-wrapper</artifactId>
+			<version>[4.0.0-SNAPSHOT,5.0.0-SNAPSHOT)</version>
+		</dependency>
+		<!-- https://mvnrepository.com/artifact/com.amazonaws/aws-java-sdk-s3 -->
+		<dependency>
+			<groupId>com.amazonaws</groupId>
+			<artifactId>aws-java-sdk-s3</artifactId>
+			<version>1.12.763</version>
+		</dependency>
+
+		<!-- https://mvnrepository.com/artifact/io.minio/minio
+		<dependency>
+			<groupId>io.minio</groupId>
+			<artifactId>minio</artifactId>
+			<version>8.3.3</version>
+		</dependency> -->
+		<dependency>
+			<groupId>org.testcontainers</groupId>
+			<artifactId>testcontainers</artifactId>
+			<version>1.16.3</version>
 			<scope>test</scope>
 		</dependency>
+		<!-- https://mvnrepository.com/artifact/junit/junit -->
 		<dependency>
 			<groupId>junit</groupId>
 			<artifactId>junit</artifactId>
-			<version>4.11</version>
+			<version>4.13.2</version>
 			<scope>test</scope>
 		</dependency>
-
 		<dependency>
-			<groupId>org.glassfish.jersey.test-framework</groupId>
+			<groupId>ch.qos.logback</groupId>
-			<artifactId>jersey-test-framework-core</artifactId>
+			<artifactId>logback-classic</artifactId>
-			<version>2.13</version>
 			<scope>test</scope>
 		</dependency>
-
-		<dependency>
-			<groupId>org.glassfish.jersey.test-framework.providers</groupId>
-			<artifactId>jersey-test-framework-provider-grizzly2</artifactId>
-			<version>2.13</version>
-			<scope>test</scope>
-		</dependency>
-
 	</dependencies>
 	<build>
-		<finalName>${artifactId}</finalName>
+		<finalName>${project.artifactId}</finalName>
+		<resources>
+			<resource>
+				<directory>src/main/resources</directory>
+			</resource>
+		</resources>
 		<pluginManagement>
 			<plugins>
 				<plugin>
-					<groupId>org.eclipse.m2e</groupId>
-					<artifactId>lifecycle-mapping</artifactId>
-					<version>1.0.0</version>
-					<configuration>
-						<lifecycleMappingMetadata>
-							<pluginExecutions>
-								<pluginExecution>
-									<pluginExecutionFilter>
 					<groupId>org.codehaus.mojo</groupId>
 					<artifactId>aspectj-maven-plugin</artifactId>
-
+					<version>${aspectj-plugin.version}</version>
-										<versionRange>[1.0,)</versionRange>
-										<goals>
-											<goal>test-compile</goal>
-											<goal>compile</goal>
-										</goals>
-									</pluginExecutionFilter>
-									<action>
-										<execute />
-									</action>
-								</pluginExecution>
-							</pluginExecutions>
-						</lifecycleMappingMetadata>
-					</configuration>
-				</plugin>
-				<plugin>
-					<groupId>org.codehaus.mojo</groupId>
-					<artifactId>aspectj-maven-plugin</artifactId>
-					<version>1.7</version>
 					<configuration>
-						<complianceLevel>1.8</complianceLevel>
+						<complianceLevel>17</complianceLevel>
-						<source>1.8</source>
+						<source>17</source>
-						<target>1.8</target>
+						<target>17</target>
 						<aspectLibraries>
 							<aspectLibrary>
 								<groupId>org.gcube.common</groupId>
@@ -415,10 +393,18 @@
 							</aspectLibrary>
 						</aspectLibraries>
 					</configuration>
+					<dependencies>
+						<dependency>
+							<groupId>org.aspectj</groupId>
+							<artifactId>aspectjtools</artifactId>
+							<version>1.9.21.1</version>
+						</dependency>
+					</dependencies>
 					<executions>
 						<execution>
 							<goals>
-								<goal>compile</goal>
+								<goal>compile</goal>       <!-- use this goal to weave
+								all your main classes -->
 							</goals>
 						</execution>
 					</executions>
@@ -433,27 +419,69 @@
 			<plugin>
 				<groupId>org.apache.maven.plugins</groupId>
 				<artifactId>maven-war-plugin</artifactId>
-				<version>2.4</version>
 				<configuration>
 					<failOnMissingWebXml>false</failOnMissingWebXml>
 				</configuration>
 			</plugin>
+			<!-- Enunciate Maven plugin  -->
+			<plugin>
+				<groupId>com.webcohesion.enunciate</groupId>
+				<artifactId>enunciate-maven-plugin</artifactId>
+				<version>${enunciate.version}</version>
+				<dependencies>
+					<dependency>
+						<groupId>com.webcohesion.enunciate</groupId>
+						<artifactId>enunciate-lombok</artifactId>
+						<version>2.9.1</version>
+					</dependency>
+				</dependencies>
+				<configuration>
+					<configFile>${project.basedir}/documentation/enunciate/enunciate.xml</configFile>
+					<sourcepath-includes>
+						<!-- Include storagehub classes -->
+						<sourcepath-include>
+							<groupId>org.gcube.common</groupId>
+							<artifactId>storagehub</artifactId>
+						</sourcepath-include>
+						<!-- Include storagehub-model classes -->
+						<sourcepath-include>
+							<groupId>org.gcube.common</groupId>
+							<artifactId>storagehub-model</artifactId>
+						</sourcepath-include>
+						<!-- Include jersey media classes -->
+						<sourcepath-include>
+							<groupId>org.glassfish.jersey.media</groupId>
+							<artifactId>jersey-media-multipart</artifactId>
+						</sourcepath-include>
+					</sourcepath-includes>
+				</configuration>
+				<executions>
+					<execution>
+						<id>assemble</id>
+						<goals>
+							<goal>assemble</goal>
+						</goals>
+					</execution>
+				</executions>
+			</plugin>
+			<!-- Copy Enunciate Documentation from your-application/docs to
+			your-application.war -->
 			<plugin>
 				<groupId>org.apache.maven.plugins</groupId>
 				<artifactId>maven-resources-plugin</artifactId>
-				<version>2.6</version>
 				<executions>
 					<execution>
-						<id>copy-profile</id>
+						<id>copy-enunciate-docs</id>
+						<phase>process-resources</phase>
 						<goals>
 							<goal>copy-resources</goal>
 						</goals>
-						<phase>process-resources</phase>
 						<configuration>
-							<outputDirectory>${webappDirectory}</outputDirectory>
+							<outputDirectory>target</outputDirectory>
 							<resources>
 								<resource>
-									<directory>${distroDirectory}</directory>
+									<targetPath>${project.build.directory}/${project.artifactId}/workspace/api-docs</targetPath>
+									<directory>${project.build.directory}/api-docs</directory>
 									<filtering>true</filtering>
 								</resource>
 							</resources>
@@ -461,25 +489,57 @@
 					</execution>
 				</executions>
 			</plugin>
+			<!-- SPHINX PLUGIN triggered at 'compile' -->
 			<plugin>
-				<groupId>org.apache.maven.plugins</groupId>
+				<groupId>kr.motd.maven</groupId>
-				<artifactId>maven-assembly-plugin</artifactId>
+				<artifactId>sphinx-maven-plugin</artifactId>
+				<version>2.10.0</version>
 				<configuration>
-					<descriptors>
+					<outputDirectory>${project.build.directory}/${project.build.finalName}/workspace/docs</outputDirectory>
-						<descriptor>descriptor.xml</descriptor>
+					<builder>html</builder>
-					</descriptors>
+					<configDirectory>${project.basedir}/documentation/sphinx</configDirectory>
+					<sourceDirectory>${project.basedir}/documentation/sphinx</sourceDirectory>
 				</configuration>
 				<executions>
 					<execution>
-						<id>servicearchive</id>
+						<phase>process-resources</phase>
-						<phase>install</phase>
 						<goals>
-							<goal>single</goal>
+							<goal>generate</goal>
 						</goals>
 					</execution>
 				</executions>
 			</plugin>
 		</plugins>
 	</build>
-
+	<profiles>
+		<profile>
+			<id>integration</id>
+			<build>
+				<finalName>storagehub-test-storages</finalName>
+				<plugins>
+					<plugin>
+						<artifactId>maven-antrun-plugin</artifactId>
+						<version>1.7</version>
+						<executions>
+							<execution>
+								<phase>process-test-classes</phase>
+								<configuration>
+									<target>
+										<copy todir="${basedir}/target/classes">
+											<fileset
+												dir="${basedir}/target/test-classes"
+												includes="org/gcube/data/access/storages/**/*" />
+										</copy>
+									</target>
+								</configuration>
+								<goals>
+									<goal>run</goal>
+								</goals>
+							</execution>
+						</executions>
+					</plugin>
+				</plugins>
+			</build>
+		</profile>
+	</profiles>
 </project>

profile.xml

@@ -1,25 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<Resource xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
-	<ID></ID>
-	<Type>Service</Type>
-	<Profile>
-		<Description>Storage Hub Webapp</Description>
-		<Class>DataAccess</Class>
-		<Name>${artifactId}</Name>
-		<Version>1.0.0</Version>
-		<Packages>
-			<Software>
-				<Name>${artifactId}</Name>
-				<Version>${version}</Version>
-				<MavenCoordinates>
-					<groupId>${groupId}</groupId>
-					<artifactId>${artifactId}</artifactId>
-					<version>${version}</version>
-				</MavenCoordinates>
-				<Files>
-					<File>${build.finalName}.jar</File>
-				</Files>
-			</Software>
-		</Packages>
-	</Profile>
-</Resource>

src/main/java/org/gcube/data/access/storagehub/AuthorizationChecker.java

@@ -1,34 +1,39 @@
 package org.gcube.data.access.storagehub;
 
-import org.apache.jackrabbit.api.security.user.Group;
+import java.util.List;
 
-import javax.inject.Inject;
+import jakarta.inject.Inject;
-import javax.inject.Singleton;
+import jakarta.inject.Singleton;
 import javax.jcr.Node;
 import javax.jcr.RepositoryException;
 import javax.jcr.Session;
-import javax.jcr.security.AccessControlEntry;
-import javax.jcr.security.Privilege;
 
 import org.apache.jackrabbit.api.JackrabbitSession;
-import org.apache.jackrabbit.api.security.JackrabbitAccessControlList;
 import org.apache.jackrabbit.api.security.user.Authorizable;
-import org.apache.jackrabbit.commons.jackrabbit.authorization.AccessControlUtils;
+import org.apache.jackrabbit.api.security.user.Group;
-import org.gcube.common.authorization.library.provider.AuthorizationProvider;
+import org.apache.jackrabbit.api.security.user.UserManager;
 import org.gcube.common.storagehub.model.Excludes;
+import org.gcube.common.storagehub.model.acls.ACL;
 import org.gcube.common.storagehub.model.acls.AccessType;
 import org.gcube.common.storagehub.model.exceptions.BackendGenericError;
 import org.gcube.common.storagehub.model.exceptions.InvalidCallParameters;
 import org.gcube.common.storagehub.model.exceptions.UserNotAuthorizedException;
+import org.gcube.common.storagehub.model.items.FolderItem;
 import org.gcube.common.storagehub.model.items.Item;
 import org.gcube.common.storagehub.model.items.SharedFolder;
-import org.gcube.data.access.storagehub.handlers.Node2ItemConverter;
+import org.gcube.common.storagehub.model.items.TrashItem;
+import org.gcube.data.access.storagehub.handlers.items.Node2ItemConverter;
+import org.gcube.data.access.storagehub.services.interfaces.ACLManagerInterface;
 import org.slf4j.Logger;
 import org.slf4j.LoggerFactory;
 
-import lombok.extern.java.Log;
+/**
-import lombok.extern.log4j.Log4j;
+ * 
-
+ * 
+ * the caller must be authorized, so i'm not passing the login also if it works on behalf of an user
+ * 
+ *
+ */
 @Singleton
 public class AuthorizationChecker {
 
@@ -37,76 +42,113 @@ public class AuthorizationChecker {
 	@Inject
 	Node2ItemConverter node2Item;
 	
-	public void checkReadAuthorizationControl(Session session, String id) throws UserNotAuthorizedException , BackendGenericError, RepositoryException{
+	@Inject
-		Node node = session.getNodeByIdentifier(id);
+	PathUtil pathUtil;
 	
-		String login = AuthorizationProvider.instance.get().getClient().getId();
+	@Inject 
+	ACLManagerInterface aclManager;
+	
+	public void checkReadAuthorizationControl(Session session, String userToCheck, String id) throws UserNotAuthorizedException , BackendGenericError, RepositoryException{
+
+		Node node = session.getNodeByIdentifier(id);
 
 		Item item  = node2Item.getItem(node, Excludes.ALL);
 
-		if (item==null) throw new UserNotAuthorizedException("Insufficent Provileges for user "+login+" to read node with id "+id+": it's  not a valid StorageHub node");
+		if (item==null) throw new UserNotAuthorizedException("Insufficent Privileges for user "+userToCheck+" to read node with id "+id+": it's  not a valid StorageHub node");
 
+		//checking if the item is in the owner trash folder 
+		if(item instanceof TrashItem && item.getParentPath().equals(pathUtil.getTrashPath(userToCheck, session).toPath())) 
+			return;
 		
+		if (!item.isShared() && item.getOwner()!=null && item.getOwner().equals(userToCheck)) return;
+
+		if (hasParentPublicFolder(session, item)) return;
+		
+		//TODO: remove when messages will be passed to a new system
+		String parentPath = item.getParentPath();
+		if (parentPath.endsWith("hl:attachments") && (parentPath.contains("/OutBox/") || parentPath.contains("/InBox/"))) {
+			return ;
+		}
 		
 		if (item.isShared()) {
-			SharedFolder parentShared = node2Item.getItem(retrieveSharedFolderParent(node, session), Excludes.EXCLUDE_ACCOUNTING);
+			//SharedFolder parentShared = node2Item.getItem(retrieveSharedFolderParent(node, session), Excludes.EXCLUDE_ACCOUNTING);
-			
+			//if (parentShared.getUsers().getMap().keySet().contains(userToCheck)) return;
-			if (parentShared.getUsers().getMap().keySet().contains(login)) return;
-			
 			//CHECKING ACL FOR VREFOLDER AND SHARED FOLDER
-			JackrabbitAccessControlList accessControlList = AccessControlUtils.getAccessControlList(session, parentShared.getPath());
+			List<ACL> acls = aclManager.getByItem(item, session);
-			AccessControlEntry[] entries = accessControlList.getAccessControlEntries();
+			UserManager userManager = ((JackrabbitSession) session).getUserManager();
-			Authorizable userAuthorizable = ((JackrabbitSession) session).getUserManager().getAuthorizable(login);
+			Authorizable userAuthorizable = userManager.getAuthorizable(userToCheck);
-			for (AccessControlEntry entry: entries) {
+			for (ACL entry: acls) {
-				log.debug("checking access right for {} with compared with {}",login, entry.getPrincipal());
+				log.debug("checking access right for {} with compared with {}",userToCheck, entry.getPrincipal());
-				Authorizable authorizable = ((JackrabbitSession) session).getUserManager().getAuthorizable(entry.getPrincipal());
+				Authorizable authorizable = userManager.getAuthorizable(entry.getPrincipal());
-				//TODO; check why sometimes the next line gets a nullpointer
+
-				if (!authorizable.isGroup() && entry.getPrincipal().getName().equals(login)) return;
+				if (authorizable==null) {
+					log.warn("{} doesn't have a correspondant auhtorizable object, check it ", entry.getPrincipal());
+					continue;
+				}
+
+				try {
+					if (!authorizable.isGroup() && entry.getPrincipal().equals(userToCheck)) return;
 					if (authorizable.isGroup() && ((Group) authorizable).isMember(userAuthorizable)) return;
+				}catch (Throwable e) {
+					log.warn("someting went wrong checking authorizations",e);
+				}
+			}
 		} 
-			throw new UserNotAuthorizedException("Insufficent Provileges for user "+login+" to read node with id "+id);
 		
-		} else if (item.getOwner()==null || !item.getOwner().equals(login))
+		throw new UserNotAuthorizedException("Insufficent Privileges for user "+userToCheck+" to read node with id "+id);
-			throw new UserNotAuthorizedException("Insufficent Provileges for user "+login+" to read node with id "+id);
 
 	}
 
-	private Node retrieveSharedFolderParent(Node node, Session session) throws BackendGenericError, RepositoryException{
+	
-		if (node2Item.checkNodeType(node, SharedFolder.class)) return node;
+	private boolean hasParentPublicFolder(Session session, Item item) {
+		if(item==null || item.getParentPath()==null) return false;
+		if (item.getParentPath().replaceAll("/Home/[^/]*/"+Constants.WORKSPACE_ROOT_FOLDER_NAME,"").isEmpty() || item.getParentPath().replaceAll(Constants.SHARED_FOLDER_PATH, "").isEmpty()) {
+			if (item instanceof FolderItem folder)
+				return folder.isPublicItem();
+			else return false;
+		} else { 
+			if (item instanceof FolderItem folder)
+				try {
+					return (folder.isPublicItem() || hasParentPublicFolder(session, node2Item.getItem(folder.getParentId(), session, Excludes.ALL)));
+				}catch (Throwable e) {
+					log.warn("error checking public parents",e);
+					return false;
+				}
 			else 
-			return retrieveSharedFolderParent(node.getParent(), session);
+				try {
-
+					return hasParentPublicFolder(session, node2Item.getItem(item.getParentId(), session, Excludes.ALL));
+				}catch (Throwable e) {
+					log.warn("error checking public parents",e);
+					return false;
+				}
+		}
 	}
 
-	public void checkWriteAuthorizationControl(Session session, String id, boolean isNewItem) throws UserNotAuthorizedException, BackendGenericError, RepositoryException {
-		//in case of newItem the id is the parent otherwise the old node to replace
-		Node node = session.getNodeByIdentifier(id);
 	
-		Item item  = node2Item.getItem(node, Excludes.ALL);
 
-		String login = AuthorizationProvider.instance.get().getClient().getId();
+	//newItem means that a new item will be created and id is the destination directory
-
+	public void checkWriteAuthorizationControl(Session session, String userToCheck, Item item, Node node,  boolean isNewItem) throws UserNotAuthorizedException, BackendGenericError, RepositoryException {
-		if (item==null) throw new UserNotAuthorizedException("Insufficent Provileges for user "+login+" to write into node with id "+id+": it's  not a valid StorageHub node");
+		if (item==null) throw new UserNotAuthorizedException("Not valid StorageHub node");
 		
 		if (Constants.WRITE_PROTECTED_FOLDER.contains(item.getName()) || Constants.WRITE_PROTECTED_FOLDER.contains(item.getTitle()))
-			throw new UserNotAuthorizedException("Insufficent Provileges for user "+login+" to write into node with id "+id+": it's  a protected folder");
+			throw new UserNotAuthorizedException("Insufficent Privileges for user "+userToCheck+" to write into node with id "+item.getId()+": it's  a protected folder");
 		
 		if (item.isShared()) {
-			Node parentSharedNode = retrieveSharedFolderParent(node, session);
+			
-			JackrabbitAccessControlList accessControlList = AccessControlUtils.getAccessControlList(session, parentSharedNode.getPath());
+			//CHECKING ACL FOR VREFOLDER AND SHARED FOLDER
-			AccessControlEntry[] entries = accessControlList.getAccessControlEntries();
+			List<ACL> acls = aclManager.getByItem(item, session);
-			Authorizable UserAuthorizable = ((JackrabbitSession) session).getUserManager().getAuthorizable(login);
+			UserManager userManager = ((JackrabbitSession) session).getUserManager();
+			Authorizable UserAuthorizable = userManager.getAuthorizable(userToCheck);
 			//put it in a different method
-			for (AccessControlEntry entry: entries) {
+			for (ACL entry: acls) {
-				Authorizable authorizable = ((JackrabbitSession) session).getUserManager().getAuthorizable(entry.getPrincipal());
+				Authorizable authorizable = userManager.getAuthorizable(entry.getPrincipal());
-				if ((!authorizable.isGroup() && entry.getPrincipal().getName().equals(login)) || (authorizable.isGroup() && ((Group) authorizable).isMember(UserAuthorizable))){
+				if ((!authorizable.isGroup() && entry.getPrincipal().equals(userToCheck)) || (authorizable.isGroup() && ((Group) authorizable).isMember(UserAuthorizable))){
-					for (Privilege privilege : entry.getPrivileges()){
+					for (AccessType privilege : entry.getAccessTypes()){
-						AccessType access = AccessType.fromValue(privilege.getName());
+						if (isNewItem && privilege!=AccessType.READ_ONLY)
-						if (isNewItem && access!=AccessType.READ_ONLY)
 							return;
 						else 
 							if (!isNewItem && 
-									(access==AccessType.ADMINISTRATOR || access==AccessType.WRITE_ALL || (access==AccessType.WRITE_OWNER && item.getOwner().equals(login)))) 
+									(privilege==AccessType.ADMINISTRATOR || privilege==AccessType.WRITE_ALL || (privilege==AccessType.WRITE_OWNER && item.getOwner().equals(userToCheck)))) 
 								return;
 
 					}
@@ -114,72 +156,56 @@ public class AuthorizationChecker {
 				}
 			}
 		} else 
-			if(item.getOwner().equals(login))
+			if(item.getOwner().equals(userToCheck))
 				return;
-		throw new UserNotAuthorizedException("Insufficent Provileges for user "+login+" to write into node with id "+id);
+		throw new UserNotAuthorizedException("Insufficent Privileges for user "+userToCheck+" to write into node with id "+item.getId());
+	}
+
+	//newItem means that a new item will be created and id is the destination directory
+	public void checkWriteAuthorizationControl(Session session, String userToCheck , String id, boolean isNewItem) throws UserNotAuthorizedException, BackendGenericError, RepositoryException {
+		//in case of newItem the id is the parent otherwise the old node to replace
+		Node node = session.getNodeByIdentifier(id);
+		Item item  = node2Item.getItem(node, Excludes.ALL);
+		checkWriteAuthorizationControl(session, userToCheck, item, node, isNewItem);
 	}
 
 
+	/**
+	 * 
+	 * checks if item with {id} can be moved
+	 * 
+	 */
 	public void checkMoveOpsForProtectedFolders(Session session, String id) throws InvalidCallParameters, BackendGenericError, RepositoryException {
 		Node node = session.getNodeByIdentifier(id);
 		Item item  = node2Item.getItem(node, Excludes.ALL);
+		
 		if (Constants.PROTECTED_FOLDER.contains(item.getName()) || Constants.PROTECTED_FOLDER.contains(item.getTitle()))
 			throw new InvalidCallParameters("protected folder cannot be moved or deleted");
 	}
 
 
-	public void checkAdministratorControl(Session session, SharedFolder item) throws UserNotAuthorizedException, BackendGenericError, RepositoryException {
+	/**
-		//TODO: riguardare questo pezzo di codice		
+	 * 
-		String login = AuthorizationProvider.instance.get().getClient().getId();
+	 * checks if {userToCheck} is an admin for {item}
+	 * 
+	 */
+	public void checkAdministratorControl(Session session, String userToCheck, SharedFolder item) throws UserNotAuthorizedException, BackendGenericError, RepositoryException {
 		
-		if (item==null) throw new UserNotAuthorizedException("Insufficent Provileges for user "+login+": it's  not a valid StorageHub node");
+		if (item==null) throw new UserNotAuthorizedException("Insufficent Privileges for user "+userToCheck+": it's  not a valid StorageHub node");
-
-		Node node = session.getNodeByIdentifier(item.getId());
 
 		if (item.isShared()) {
-			Node parentSharedNode = retrieveSharedFolderParent(node, session);
+			List<ACL> acls = aclManager.getByItem(item, session);
-			JackrabbitAccessControlList accessControlList = AccessControlUtils.getAccessControlList(session, parentSharedNode.getPath());
-			AccessControlEntry[] entries = accessControlList.getAccessControlEntries();
-			//put it in a different method
 			
-			SharedFolder parentShared = node2Item.getItem(parentSharedNode, Excludes.EXCLUDE_ACCOUNTING);					
+			for (ACL entry: acls) {
-			for (AccessControlEntry entry: entries) {
+				if (entry.getPrincipal().equals(userToCheck)) {
-				if (entry.getPrincipal().getName().equals(login) || (parentShared.isVreFolder() && entry.getPrincipal().getName().equals(parentShared.getTitle()))) {
+					for (AccessType privilege : entry.getAccessTypes()){
-					for (Privilege privilege : entry.getPrivileges()){
+						if (privilege==AccessType.ADMINISTRATOR) 
-						AccessType access = AccessType.fromValue(privilege.getName());
-						if (access==AccessType.ADMINISTRATOR) 
 							return;
-
 					}
-					throw new UserNotAuthorizedException("The user "+login+" is not an administrator of node with id "+item.getId());
 				}
 			}
+		} 
+		throw new UserNotAuthorizedException("The user "+userToCheck+" is not an administrator of node with id "+item.getId());
+	}
 
-		}  
-
-		throw new UserNotAuthorizedException("The user "+login+" is not an administrator of node with id "+item.getId());
-
-	}
-
-
-	/*
-	private String retrieveOwner(Node node) {
-		Node nodeOwner;
-		//get Owner
-		try{
-			return node.getProperty(NodeProperty.PORTAL_LOGIN.toString()).getString();
-		}catch (Exception e) {
-			try {
-				nodeOwner = node.getNode(NodeProperty.OWNER.toString());
-				return nodeOwner.getProperty(NodeProperty.PORTAL_LOGIN.toString()).getString();
-				//				this.userId = nodeOwner.getProperty(USER_ID).getString();
-				//				this.portalLogin = nodeOwner.getProperty(PORTAL_LOGIN).getString();
-				//				node.getSession().save();
-			} catch (Exception e1) {
-				throw new RuntimeException(e1);
-			}
-
-		}	
-	}
-	 */
 }

src/main/java/org/gcube/data/access/storagehub/Constants.java

@@ -3,9 +3,23 @@ package org.gcube.data.access.storagehub;
 import java.util.Arrays;
 import java.util.List;
 
+import javax.jcr.SimpleCredentials;
+
 public class Constants {
 
-	public static final String VRE_FOLDER_PARENT_NAME = "MySpecialFolders";
+	public static final String OLD_VRE_FOLDER_PARENT_NAME = "MySpecialFolders";
+	
+	public static final String PERSONAL_VRES_FOLDER_PARENT_NAME = "VREs";
+	
+	public static final String INBOX_FOLDER_NAME = "InBox";
+	
+	public static final String OUTBOX_FOLDER_NAME = "OutBox";
+	
+	public static final String ATTACHMENTNODE_NAME = "hl:attachments";
+	
+	public static final String SHARED_WITH_ME_PARENT_NAME = "SharedWithMe";
+	
+	//public static final String MYSHARED_PARENT_NAME = "MyShared";
 	
 	public static final String SHARED_FOLDER_PATH = "/Share";
 	
@@ -15,13 +29,16 @@ public class Constants {
 	
 	public static final String QUERY_LANGUAGE ="JCR-SQL2";
 	
-	public static final String ADMIN_PARAM_NAME ="admin-username";
+	public static final String HOME_VERSION_PROP = "hl:version";
 	
-	public static final String ADMIN_PARAM_PWD ="admin-pwd";
+	public static final List<String> FOLDERS_TO_EXLUDE = Arrays.asList(Constants.OLD_VRE_FOLDER_PARENT_NAME, Constants.TRASH_ROOT_FOLDER_NAME);
 	
-	public static final List<String> FOLDERS_TO_EXLUDE = Arrays.asList(Constants.VRE_FOLDER_PARENT_NAME, Constants.TRASH_ROOT_FOLDER_NAME);
+	public static final List<String> WRITE_PROTECTED_FOLDER = Arrays.asList(Constants.OLD_VRE_FOLDER_PARENT_NAME, Constants.TRASH_ROOT_FOLDER_NAME);
 	
-	public static final List<String> WRITE_PROTECTED_FOLDER = Arrays.asList(Constants.VRE_FOLDER_PARENT_NAME, Constants.TRASH_ROOT_FOLDER_NAME);
+	public static final List<String> PROTECTED_FOLDER = Arrays.asList(Constants.WORKSPACE_ROOT_FOLDER_NAME, Constants.OLD_VRE_FOLDER_PARENT_NAME, Constants.TRASH_ROOT_FOLDER_NAME);
+	
+	public static final String ADMIN_USER ="admin";
+	
+	public static final SimpleCredentials JCR_CREDENTIALS = new SimpleCredentials(ADMIN_USER,"admin".toCharArray());
 
-	public static final List<String> PROTECTED_FOLDER = Arrays.asList(Constants.WORKSPACE_ROOT_FOLDER_NAME, Constants.VRE_FOLDER_PARENT_NAME, Constants.TRASH_ROOT_FOLDER_NAME);
 }

src/main/java/org/gcube/data/access/storagehub/DocsRedirectFilter.java

@@ -0,0 +1,40 @@
+package org.gcube.data.access.storagehub;
+
+import java.io.IOException;
+import jakarta.servlet.Filter;
+import jakarta.servlet.FilterChain;
+import jakarta.servlet.FilterConfig;
+import jakarta.servlet.ServletException;
+import jakarta.servlet.ServletRequest;
+import jakarta.servlet.ServletResponse;
+import jakarta.servlet.http.HttpServletRequest;
+import jakarta.servlet.http.HttpServletResponse;
+
+public class DocsRedirectFilter implements Filter {
+
+    @Override
+    public void init(FilterConfig filterConfig) throws ServletException {
+        // Initialization code, if needed
+    }
+
+    @Override
+    public void doFilter(ServletRequest request, ServletResponse response, FilterChain chain)
+            throws IOException, ServletException {
+        HttpServletRequest httpRequest = (HttpServletRequest) request;
+        HttpServletResponse httpResponse = (HttpServletResponse) response;
+
+        String path = httpRequest.getRequestURI();
+        if (path.endsWith("/docs") || path.endsWith("/api-docs")) {
+            httpResponse.sendRedirect(path + "/index.html");
+        } else if (path.endsWith("/docs/") || path.endsWith("/api-docs/")) {
+            httpResponse.sendRedirect(path + "index.html");
+        } else {
+            chain.doFilter(request, response);
+        }
+    }
+
+    @Override
+    public void destroy() {
+        // Cleanup code, if needed
+    }
+}

src/main/java/org/gcube/data/access/storagehub/MultipleOutputStream.java

@@ -1,140 +0,0 @@
-package org.gcube.data.access.storagehub;
-
-import java.io.BufferedInputStream;
-import java.io.IOException;
-import java.io.InputStream;
-import java.io.PipedInputStream;
-import java.io.PipedOutputStream;
-import org.slf4j.Logger;
-import org.slf4j.LoggerFactory;
-
-public class MultipleOutputStream {
-
-	private Logger logger = LoggerFactory.getLogger(MultipleOutputStream.class);
-
-	private MyPipedInputStream[] pipedInStreams;
-
-	private InputStream is;
-
-	private MyPipedOututStream[] pipedOutStreams;
-
-	private int index=0;
-
-	public MultipleOutputStream(InputStream is, int number) throws IOException{
-		this.is = is;
-
-
-		logger.debug("requested {} piped streams ",number);
-
-		pipedInStreams = new MyPipedInputStream[number];
-		pipedOutStreams = new MyPipedOututStream[number];
-
-		for (int i =0; i<number; i++) {		
-			pipedOutStreams[i] = new MyPipedOututStream();
-			pipedInStreams[i] = new MyPipedInputStream(pipedOutStreams[i]);
-		}
-
-	}
-
-	public void startWriting() throws IOException{
-		
-		BufferedInputStream bis = new BufferedInputStream(is);
-		byte[] buf = new byte[1024*64];
-		int read=-1;
-		int writeTot = 0;
-		while ((read =bis.read(buf))!=-1){
-			for (int i=0; i< pipedInStreams.length; i++) {
-				if (!pipedInStreams[i].isClosed()) {
-					pipedOutStreams[i].write(buf, 0, read);
-				}
-			}
-
-
-			writeTot+= read;
-			if (allOutStreamClosed()) 
-				break;
-
-		}
-
-		for (int i=0; i< pipedOutStreams.length; i++) {
-			if (!pipedOutStreams[i].isClosed()) {
-				logger.debug("closing outputstream {}",i);
-				pipedOutStreams[i].close();
-			}
-		}
-
-		logger.debug("total written {} ",writeTot);
-
-	}
-
-
-	private boolean allOutStreamClosed() {
-		for (int i=0; i<pipedOutStreams.length; i++) {
-			if (!pipedOutStreams[i].isClosed())
-				return false;
-		}
-		return true;
-	}
-
-	public synchronized InputStream get() {
-		logger.debug("requesting piped streams {}",index);
-		if (index>=pipedInStreams.length) return null;
-		return pipedInStreams[index++];
-	}
-
-
-	public class MyPipedOututStream extends PipedOutputStream{
-
-		boolean close = false;
-
-		@Override
-		public void close() throws IOException {
-			this.close = true;
-			super.close();
-		}
-
-		/**
-		 * @return the close
-		 */
-		public boolean isClosed() {
-			return close;
-		}
-
-		@Override
-		public void write(byte[] b, int off, int len) throws IOException {
-			try{
-				super.write(b, off, len);
-			}catch(IOException io){
-				this.close = true;
-			}
-		}
-
-
-
-
-	}
-
-	public class MyPipedInputStream extends PipedInputStream{
-
-		boolean close = false;
-
-		public MyPipedInputStream(PipedOutputStream src) throws IOException {
-			super(src);
-		}
-
-		@Override
-		public void close() throws IOException {
-			this.close = true;
-			logger.debug(Thread.currentThread().getName()+" close MyPipedInputStream");
-			super.close();
-		}
-
-		/**
-		 * @return the close
-		 */
-		public boolean isClosed() {
-			return close;
-		}
-
-	}
-}

src/main/java/org/gcube/data/access/storagehub/MyApplicationListener.java

@@ -0,0 +1,38 @@
+package org.gcube.data.access.storagehub;
+
+import org.gcube.data.access.storagehub.repository.StoragehubRepository;
+import org.glassfish.jersey.server.monitoring.ApplicationEvent;
+import org.glassfish.jersey.server.monitoring.ApplicationEventListener;
+import org.glassfish.jersey.server.monitoring.RequestEvent;
+import org.glassfish.jersey.server.monitoring.RequestEventListener;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
+
+import jakarta.ws.rs.ext.Provider;
+
+@Provider
+public class MyApplicationListener implements ApplicationEventListener {
+
+	private static final Logger log = LoggerFactory.getLogger(MyApplicationListener.class);
+	
+	StoragehubRepository repository = StoragehubRepository.repository;
+	
+	@Override
+	public void onEvent(ApplicationEvent event) {
+		switch (event.getType()) {
+		case DESTROY_FINISHED:
+			log.info("Destroying application storageHub");
+			repository.shutdown();
+			log.info("Jackrabbit repository stopped");
+		default:
+			break;
+		}
+	}
+
+	@Override
+	public RequestEventListener onRequest(RequestEvent requestEvent) {
+		return null;
+	}
+
+	
+}

src/main/java/org/gcube/data/access/storagehub/NodeChildrenFilterIterator.java

@@ -0,0 +1,51 @@
+package org.gcube.data.access.storagehub;
+
+import java.util.Iterator;
+
+import javax.jcr.Node;
+import javax.jcr.NodeIterator;
+import javax.jcr.RepositoryException;
+
+import org.gcube.common.storagehub.model.exceptions.BackendGenericError;
+import org.gcube.data.access.storagehub.handlers.ClassHandler;
+
+public class NodeChildrenFilterIterator implements Iterator<Node> {
+
+	private NodeIterator it;
+
+	public NodeChildrenFilterIterator(Node node) throws BackendGenericError{
+		super();
+		try {
+			it = node.getNodes();
+		} catch (RepositoryException e) {
+			throw new BackendGenericError(e);
+		}
+	}
+
+	public NodeChildrenFilterIterator(NodeIterator iterator) throws BackendGenericError{
+		it = iterator;
+		
+	}
+	
+	private Node currentNode = null;
+
+	@Override
+	public boolean hasNext() {
+		try { 
+			while (it.hasNext()) {
+				currentNode=it.nextNode();
+				if (ClassHandler.instance().get(currentNode.getPrimaryNodeType().getName())!=null) 
+					return true;
+			}
+			return false;			
+		}catch (RepositoryException e) {
+			throw new RuntimeException(e);
+		}
+	}
+
+	@Override
+	public Node next() {
+		return currentNode;
+	}
+
+}

src/main/java/org/gcube/data/access/storagehub/PathUtil.java

@@ -0,0 +1,75 @@
+package org.gcube.data.access.storagehub;
+
+import jakarta.inject.Singleton;
+import javax.jcr.Node;
+import javax.jcr.RepositoryException;
+import javax.jcr.Session;
+
+import org.gcube.common.storagehub.model.Path;
+import org.gcube.common.storagehub.model.Paths;
+
+@Singleton
+public class PathUtil {
+	
+	public  Path getWorkspacePath(String login){
+		return Paths.getPath(String.format("/Home/%s/%s",login,Constants.WORKSPACE_ROOT_FOLDER_NAME));
+	}
+
+	public Path getHome(String login){
+		return Paths.getPath(String.format("/Home/%s",login));
+	}
+
+	public Path getInboxPath(String login) {
+		return Paths.append(getHome(login),Constants.INBOX_FOLDER_NAME);
+	}
+	
+	public Path getOutboxPath(String login) {
+		return Paths.append(getHome(login),Constants.OUTBOX_FOLDER_NAME);
+	}
+
+	@Deprecated
+	private  Path getOldTrashPath(String login){
+		return Paths.append(getWorkspacePath(login),Constants.TRASH_ROOT_FOLDER_NAME);
+	}
+	
+	private  Path getNewTrashPath(String login){
+		return Paths.append(getHome(login), Constants.TRASH_ROOT_FOLDER_NAME);
+	}
+	
+	@Deprecated
+	private  Path getOldVREsPath(String login){
+		return Paths.append(getWorkspacePath(login),Constants.OLD_VRE_FOLDER_PARENT_NAME);
+	}
+	
+	private  Path getNewVREsPath(String login){
+		return Paths.append(getHome(login),Constants.PERSONAL_VRES_FOLDER_PARENT_NAME);
+	}
+	
+	public  Path getSharedWithMePath(String login){
+		return Paths.append(getHome(login),Constants.SHARED_WITH_ME_PARENT_NAME);
+	}
+
+	/*
+	public  Path getMySharedPath(String login){
+		return Paths.append(getHome(login),Constants.MYSHARED_PARENT_NAME);
+	}*/
+	
+	public Path getVREsPath(String login, Session session) throws RepositoryException {
+		Path home = getHome(login);
+		Node node = session.getNode(home.toPath());
+		if (node.hasProperty(Constants.HOME_VERSION_PROP) && node.getProperty(Constants.HOME_VERSION_PROP).getLong()>0) 
+			return getNewVREsPath(login);
+		else 
+			return getOldVREsPath(login);
+	}
+	
+	public Path getTrashPath(String login, Session session) throws RepositoryException {
+		Path home = getHome(login);
+		Node node = session.getNode(home.toPath());
+		if (node.hasProperty(Constants.HOME_VERSION_PROP) && node.getProperty(Constants.HOME_VERSION_PROP).getLong()>0) 
+			return getNewTrashPath(login);
+		else 
+			return getOldTrashPath(login);
+	}
+	
+}

src/main/java/org/gcube/data/access/storagehub/RepositoryInitializerImpl.java

@@ -1,31 +0,0 @@
-package org.gcube.data.access.storagehub;
-
-import javax.inject.Singleton;
-import javax.jcr.Repository;
-import javax.naming.Context;
-import javax.naming.InitialContext;
-
-import org.gcube.data.access.storagehub.services.RepositoryInitializer;
-
-@Singleton
-public class RepositoryInitializerImpl implements RepositoryInitializer{
-
-	private Repository repository;
-	
-	@Override
-	public Repository getRepository(){
-		return repository;
-	}
-	
-	public RepositoryInitializerImpl() throws Exception{
-		InitialContext context = new InitialContext();
-		Context environment = (Context) context.lookup("java:comp/env");
-		repository = (Repository) environment.lookup("jcr/repository");
-	}
-	
-
-
-
-
-
-}

src/main/java/org/gcube/data/access/storagehub/Roles.java

@@ -0,0 +1,7 @@
+package org.gcube.data.access.storagehub;
+
+public class Roles {
+
+	public static final String VREMANAGER_ROLE = "VRE-Manager";
+	public static final String INFRASTRUCTURE_MANAGER_ROLE = "Infrastructure-Manager";
+}

src/main/java/org/gcube/data/access/storagehub/SingleFileStreamingOutput.java

@@ -4,8 +4,8 @@ import java.io.IOException;
 import java.io.InputStream;
 import java.io.OutputStream;
 
-import javax.ws.rs.WebApplicationException;
+import jakarta.ws.rs.WebApplicationException;
-import javax.ws.rs.core.StreamingOutput;
+import jakarta.ws.rs.core.StreamingOutput;
 
 import org.slf4j.Logger;
 import org.slf4j.LoggerFactory;

src/main/java/org/gcube/data/access/storagehub/StorageFactory.java

@@ -1,36 +0,0 @@
-package org.gcube.data.access.storagehub;
-
-import java.util.Map;
-import java.util.WeakHashMap;
-
-import org.gcube.common.authorization.library.provider.AuthorizationProvider;
-import org.gcube.contentmanagement.blobstorage.service.IClient;
-import org.gcube.contentmanager.storageclient.model.protocol.smp.Handler;
-import org.gcube.contentmanager.storageclient.wrapper.AccessType;
-import org.gcube.contentmanager.storageclient.wrapper.MemoryType;
-import org.gcube.contentmanager.storageclient.wrapper.StorageClient;
-import org.slf4j.Logger;
-import org.slf4j.LoggerFactory;
-
-public class StorageFactory {
-
-	public final static String SERVICE_NAME 				= "home-library";	
-	public final static String SERVICE_CLASS 				= "org.gcube.portlets.user";
-	
-	private static Map<String, IClient> clientUserMap = new WeakHashMap<String, IClient>();
-	
-	private static Logger log = LoggerFactory.getLogger(StorageFactory.class);
-	
-	public static IClient getGcubeStorage(){
-		String login = AuthorizationProvider.instance.get().getClient().getId();
-		if (!clientUserMap.containsKey(login)){
-			IClient storage = new StorageClient(SERVICE_CLASS, SERVICE_NAME,
-					login, AccessType.SHARED, MemoryType.PERSISTENT).getClient();	
-			log.info("******* Storage activateProtocol for Storage **********");
-			Handler.activateProtocol();	
-			clientUserMap.put(login, storage);
-			return storage;
-		} else return clientUserMap.get(login);
-	}
-
-}

src/main/java/org/gcube/data/access/storagehub/StorageHub.java

@@ -3,17 +3,21 @@ package org.gcube.data.access.storagehub;
 import java.util.HashSet;
 import java.util.Set;
 
-import javax.ws.rs.Path;
+import jakarta.ws.rs.Path;
-import javax.ws.rs.core.Application;
+import jakarta.ws.rs.core.Application;
 
 import org.gcube.common.gxrest.response.entity.SerializableErrorEntityTextWriter;
 import org.gcube.data.access.storagehub.services.ACLManager;
 import org.gcube.data.access.storagehub.services.GroupManager;
+import org.gcube.data.access.storagehub.services.Impersonable;
 import org.gcube.data.access.storagehub.services.ItemSharing;
 import org.gcube.data.access.storagehub.services.ItemsCreator;
 import org.gcube.data.access.storagehub.services.ItemsManager;
+import org.gcube.data.access.storagehub.services.MessageManager;
+import org.gcube.data.access.storagehub.services.StorageManager;
 import org.gcube.data.access.storagehub.services.UserManager;
 import org.gcube.data.access.storagehub.services.WorkspaceManager;
+import org.gcube.data.access.storagehub.services.admin.ScriptManager;
 import org.glassfish.jersey.media.multipart.MultiPartFeature;
 
 @Path("workspace")
@@ -23,7 +27,7 @@ public class StorageHub extends Application {
     public Set<Class<?>> getClasses() {
         final Set<Class<?>> classes = new HashSet<Class<?>>();
         // register resources and features
-        classes.add(MultiPartFeature.class);
+        classes.add(Impersonable.class);
         classes.add(WorkspaceManager.class);
         classes.add(ItemsManager.class);
         classes.add(ItemsCreator.class);
@@ -31,7 +35,12 @@ public class StorageHub extends Application {
         classes.add(ItemSharing.class);
         classes.add(UserManager.class);
         classes.add(GroupManager.class);
+        classes.add(ScriptManager.class);
+        classes.add(MessageManager.class);
+        classes.add(StorageManager.class);
+        classes.add(MultiPartFeature.class);
         classes.add(SerializableErrorEntityTextWriter.class);
+        classes.add(MyApplicationListener.class);
         return classes;
     }
 

src/main/java/org/gcube/data/access/storagehub/StorageHubApplicationManager.java

@@ -0,0 +1,97 @@
+package org.gcube.data.access.storagehub;
+
+import java.io.IOException;
+import java.nio.file.Path;
+import java.nio.file.Paths;
+
+import javax.jcr.RepositoryException;
+
+import org.apache.jackrabbit.api.JackrabbitSession;
+import org.gcube.com.fasterxml.jackson.databind.ObjectMapper;
+import org.gcube.common.storagehub.model.exporter.DumpData;
+import org.gcube.data.access.storagehub.handlers.DataHandler;
+import org.gcube.data.access.storagehub.repository.StoragehubRepository;
+import org.gcube.smartgears.ApplicationManager;
+import org.gcube.smartgears.ContextProvider;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
+
+public class StorageHubApplicationManager implements ApplicationManager {
+
+	private static Logger logger = LoggerFactory.getLogger(StorageHubApplicationManager.class);
+
+	private boolean alreadyShutDown = false;
+	private boolean alreadyInit = false;
+
+	
+	private StoragehubRepository repository;
+
+	// private static NotificationClient notificationClient;
+
+	/*
+	 * public static NotificationClient getNotificationClient() { return
+	 * notificationClient; }
+	 */
+
+	public StorageHubApplicationManager() {
+		repository = StoragehubRepository.repository;
+		
+	}
+
+	@Override
+	public synchronized void onInit() {
+
+		logger.info("onInit Called on storagehub");
+		try {
+			if (!alreadyInit) {
+				logger.info("jackrabbit initialization started");
+
+				repository.initContainerAtFirstStart();
+				
+				DataHandler dh = new DataHandler();
+
+				Path shubSpecificConf = ContextProvider.get().appSpecificConfigurationFolder();
+				Path importPath = Paths.get(shubSpecificConf.toString(), "import");
+				Path mainFileImportPath = Paths.get(importPath.toString(), "data.json");
+				if (importPath.toFile().exists() && mainFileImportPath.toFile().exists()) {
+					JackrabbitSession session = null;
+					try {
+						ObjectMapper mapper = new ObjectMapper();
+						DumpData data = mapper.readValue(mainFileImportPath.toFile(), DumpData.class);
+
+						session = (JackrabbitSession) repository.getRepository().login(Constants.JCR_CREDENTIALS);
+
+						dh.importData((JackrabbitSession) session, data);
+						session.save();
+					} catch (RepositoryException e) {
+						logger.error("error importing data", e);
+					} catch (IOException je) {
+						logger.error("error parsing json data, invalid schema file", je);
+					} finally {
+						if (session != null)
+							session.logout();
+					}
+				}
+				
+
+				alreadyInit = true;
+			}
+		} catch (Throwable e) {
+			logger.error("unexpected error initiliazing storagehub", e);
+		}
+
+	}
+
+	@Override
+	public synchronized void onShutdown() {
+		if (!alreadyShutDown)
+			try {
+				logger.info("jackrabbit is shutting down");
+				repository.shutdown();
+				alreadyShutDown = true;
+			} catch (Exception e) {
+				logger.warn("the database was not shutdown properly", e);
+			}
+	}
+
+}

src/main/java/org/gcube/data/access/storagehub/Utils.java

@@ -1,19 +1,17 @@
 package org.gcube.data.access.storagehub;
 
-import java.io.BufferedInputStream;
 import java.io.IOException;
 import java.io.InputStream;
 import java.io.OutputStream;
 import java.net.URL;
 import java.security.MessageDigest;
 import java.util.ArrayList;
+import java.util.Arrays;
 import java.util.Calendar;
-import java.util.Deque;
+import java.util.HashSet;
-import java.util.LinkedList;
 import java.util.List;
 import java.util.Set;
-import java.util.zip.ZipEntry;
+import java.util.function.Predicate;
-import java.util.zip.ZipOutputStream;
 
 import javax.jcr.Node;
 import javax.jcr.NodeIterator;
@@ -22,32 +20,35 @@ import javax.jcr.RepositoryException;
 import javax.jcr.Session;
 import javax.jcr.lock.Lock;
 import javax.jcr.lock.LockException;
-import javax.jcr.version.Version;
+import javax.jcr.query.Query;
 
 import org.apache.commons.io.FilenameUtils;
+import org.apache.jackrabbit.util.ISO9075;
 import org.apache.jackrabbit.util.Text;
-import org.gcube.common.authorization.library.provider.AuthorizationProvider;
 import org.gcube.common.storagehub.model.Excludes;
-import org.gcube.common.storagehub.model.Paths;
 import org.gcube.common.storagehub.model.exceptions.BackendGenericError;
+import org.gcube.common.storagehub.model.exceptions.IdNotFoundException;
 import org.gcube.common.storagehub.model.exceptions.ItemLockedException;
+import org.gcube.common.storagehub.model.exceptions.StorageHubException;
+import org.gcube.common.storagehub.model.exceptions.UserNotAuthorizedException;
 import org.gcube.common.storagehub.model.items.AbstractFileItem;
 import org.gcube.common.storagehub.model.items.ExternalLink;
 import org.gcube.common.storagehub.model.items.FolderItem;
 import org.gcube.common.storagehub.model.items.GCubeItem;
+import org.gcube.common.storagehub.model.items.GenericFileItem;
 import org.gcube.common.storagehub.model.items.Item;
 import org.gcube.common.storagehub.model.items.SharedFolder;
+import org.gcube.common.storagehub.model.storages.MetaInfo;
 import org.gcube.common.storagehub.model.types.ItemAction;
 import org.gcube.common.storagehub.model.types.NodeProperty;
-import org.gcube.contentmanager.storageclient.wrapper.AccessType;
+import org.gcube.common.storagehub.model.types.FolderInfoType;
-import org.gcube.contentmanager.storageclient.wrapper.MemoryType;
-import org.gcube.contentmanager.storageclient.wrapper.StorageClient;
 import org.gcube.data.access.storagehub.accounting.AccountingHandler;
-import org.gcube.data.access.storagehub.handlers.Item2NodeConverter;
+import org.gcube.data.access.storagehub.handlers.items.Item2NodeConverter;
-import org.gcube.data.access.storagehub.handlers.Node2ItemConverter;
+import org.gcube.data.access.storagehub.handlers.items.Node2ItemConverter;
-import org.gcube.data.access.storagehub.handlers.StorageBackendHandler;
+import org.gcube.data.access.storagehub.handlers.items.builders.FolderCreationParameters;
-import org.gcube.data.access.storagehub.handlers.VersionHandler;
+import org.gcube.data.access.storagehub.handlers.plugins.StorageBackendHandler;
-import org.gcube.data.access.storagehub.storage.backend.impl.GCubeStorageBackend;
+import org.gcube.data.access.storagehub.predicates.IncludeTypePredicate;
+import org.gcube.data.access.storagehub.predicates.ItemTypePredicate;
 import org.slf4j.Logger;
 import org.slf4j.LoggerFactory;
 
@@ -78,8 +79,22 @@ public class Utils {
 		return digest;
 	}
 
-	public static long getItemCount(Node parent, boolean showHidden, Class<? extends Item> nodeType) throws RepositoryException, BackendGenericError{
+	public static long getItemCount(Node parent, boolean showHidden, ItemTypePredicate itemTypePredicate) throws RepositoryException, BackendGenericError{
-		return getItemList(parent, Excludes.ALL, null, showHidden, nodeType).size();
+		return getItemList(parent, Excludes.ALL, null, showHidden, itemTypePredicate).size();
+	}
+	
+	public static FolderInfoType getFolderInfo(Node parent) throws RepositoryException, BackendGenericError{
+		FolderInfoType info = new FolderInfoType(0, 0);
+		List<Item> items = getItemList(parent, Excludes.GET_ONLY_CONTENT, null, false, null);
+		for (Item item: items) 
+			if (item instanceof FolderItem) {
+				FolderInfoType fit = getFolderInfo((Node) item.getRelatedNode());
+				info.setCount(info.getCount() + fit.getCount());
+				info.setSize(info.getSize() + fit.getSize());
+			} else if (item instanceof AbstractFileItem gfi)
+				info.setSize(info.getSize() + gfi.getContent().getSize());
+		info.setCount(info.getCount() + items.size());
+		return info;
 	}
 	
 	
@@ -107,36 +122,82 @@ public class Utils {
 	}
 
 
+	public static <T extends Item> List<T> searchByNameOnFolder(Session ses, String user, AuthorizationChecker authChecker, Node parent, List<String> excludes, Range range, boolean showHidden, boolean excludeTrashed, ItemTypePredicate itemTypePredicate, String nameParam) throws RepositoryException, BackendGenericError{
+		String xpath = String.format("/jcr:root%s//element(*,nthl:workspaceItem)[jcr:like(fn:lower-case(@jcr:title), '%s')]",ISO9075.encodePath(parent.getPath()), nameParam.toLowerCase());
 
-	public static <T extends Item> List<T> getItemList(Node parent, List<String> excludes, Range range, boolean showHidden, Class<? extends Item> nodeTypeToInclude) throws RepositoryException, BackendGenericError{
+		//String query = String.format("SELECT * FROM [nthl:workspaceLeafItem] AS node WHERE ISDESCENDANTNODE('%s') ORDER BY node.[jcr:lastModified] DESC ",vreFolder.getPath());
-
+		logger.trace("query for search is {}",xpath);
-		logger.debug("getting children of node {}", parent.getIdentifier());
-
-		List<T> returnList = new ArrayList<T>();
 		long start = System.currentTimeMillis();
-		NodeIterator iterator = parent.getNodes();
+		@SuppressWarnings("deprecation")
+		Query jcrQuery = ses.getWorkspace().getQueryManager().createQuery(xpath, Query.XPATH);
+		NodeChildrenFilterIterator iterator = new NodeChildrenFilterIterator(jcrQuery.execute().getNodes());
+		logger.trace("[SEARCH] real search took {} millis",(System.currentTimeMillis()-start));
+		Predicate<Node> checker = new Predicate<Node>() {
+
+			@Override
+			public boolean test(Node t) {
+				try {
+					authChecker.checkReadAuthorizationControl(t.getSession(), user, t.getIdentifier());
+					return true;
+				} catch (UserNotAuthorizedException | BackendGenericError | RepositoryException e) {
+					return false;
+				}
+			}
+
+		};
+
+		return getItemListFromNodeIterator(checker, iterator , excludes, range, showHidden, excludeTrashed, itemTypePredicate);
+	}
+
+
+
+	public static <T extends Item> List<T> getItemList(Node parent, List<String> excludes, Range range, boolean showHidden, ItemTypePredicate itemTypePredicate) throws RepositoryException, BackendGenericError{
+		return getItemList(null, parent, excludes, range, showHidden, itemTypePredicate);
+	}
+
+	public static <T extends Item> List<T> getItemList(Predicate<Node> checker, Node parent, List<String> excludes, Range range, boolean showHidden, ItemTypePredicate itemTypePredicate) throws RepositoryException, BackendGenericError{
+		logger.trace("getting children of node {}", parent.getIdentifier());
+		long start = System.currentTimeMillis();
+		NodeChildrenFilterIterator iterator = new NodeChildrenFilterIterator(parent);
 		logger.trace("time to get iterator {}",(System.currentTimeMillis()-start));
-		logger.trace("nodeType is {}",nodeTypeToInclude);
+		return getItemListFromNodeIterator(checker, iterator, excludes, range, showHidden, false, itemTypePredicate);
+	}
+
+	private static <T extends Item> List<T> getItemListFromNodeIterator(Predicate<Node> checker, NodeChildrenFilterIterator iterator, List<String> excludes, Range range, boolean showHidden, boolean excludeTrashed, ItemTypePredicate itemTypePredicate) throws RepositoryException, BackendGenericError{
+		List<T> returnList = new ArrayList<T>();
+
 		int count =0;
 		logger.trace("selected range is {}", range);
 		Node2ItemConverter node2Item= new Node2ItemConverter();
+		Set<String> duplicateId = new HashSet<String>();
 		while (iterator.hasNext()){
-			Node current = iterator.nextNode();
+			Node current = iterator.next();
+
+			logger.trace("[SEARCH] evaluating node {} ",current.hasProperty(NodeProperty.TITLE.toString())? current.getProperty(NodeProperty.TITLE.toString()):current.getName());
+
+			//REMOVE duplicate nodes, in case the indexes are not working
+			if (duplicateId.contains(current.getIdentifier())) {
+				logger.warn("duplicated node found");
+				continue;
+			}
+
+			//EXCLUDES node from predicate
+			if (checker!=null && !checker.test(current))
+				continue;
 
-			logger.debug("current node "+current.getName());
 
 			if (isToExclude(current, showHidden))
 				continue;
 
-			logger.debug("current node not excluded "+current.getName());
+			logger.trace("[SEARCH] current node not excluded {} ",current.hasProperty(NodeProperty.TITLE.toString())? current.getProperty(NodeProperty.TITLE.toString()):current.getName());
 
 			if (range==null || (count>=range.getStart() && returnList.size()<range.getLimit())) {
-				T item = node2Item.getFilteredItem(current, excludes, nodeTypeToInclude);
+				T item = node2Item.getFilteredItem(current, excludes, itemTypePredicate);
-				if (item==null) continue;
+				if (item==null || (item.isTrashed() && excludeTrashed)) continue;
 				returnList.add(item);
 			} 
 			count++;
-
+			duplicateId.add(current.getIdentifier());
 		}
 		return returnList;
 	}
@@ -147,83 +208,10 @@ public class Utils {
 				(node.getPrimaryNodeType().getName().equals(FOLDERS_TYPE) && Constants.FOLDERS_TO_EXLUDE.contains(node.getName())));
 	}
 
-	public static org.gcube.common.storagehub.model.Path getWorkspacePath(){
-		return Paths.getPath(String.format("/Home/%s/Workspace",AuthorizationProvider.instance.get().getClient().getId()));
-	}
-
-	public static org.gcube.common.storagehub.model.Path getWorkspacePath(String login){
-		return Paths.getPath(String.format("/Home/%s/Workspace",login));
-	}
-
-	public static org.gcube.common.storagehub.model.Path getHome(String login){
-		return Paths.getPath(String.format("/Home/%s",login));
-	}
-
-	public static Deque<Item> getAllNodesForZip(FolderItem directory,  Session session, AccountingHandler accountingHandler, List<String> excludes) throws RepositoryException, BackendGenericError{
-		Deque<Item> queue = new LinkedList<Item>();
-		Node currentNode = session.getNodeByIdentifier(directory.getId());
-		queue.push(directory);
-		Deque<Item> tempQueue = new LinkedList<Item>();
-		logger.debug("adding directory {}",currentNode.getPath());
-		for (Item item : Utils.getItemList(currentNode,Excludes.GET_ONLY_CONTENT, null, false, null)){
-			if (excludes.contains(item.getId())) continue;
-			if (item instanceof FolderItem) 
-				tempQueue.addAll(getAllNodesForZip((FolderItem) item, session, accountingHandler, excludes));
-			else if (item instanceof AbstractFileItem){
-				logger.debug("adding file {}",item.getPath());
-				AbstractFileItem fileItem = (AbstractFileItem) item;
-				accountingHandler.createReadObj(fileItem.getTitle(), session, session.getNodeByIdentifier(item.getId()), false);
-				queue.addLast(item);
-			}
-		}
-		queue.addAll(tempQueue);
-		return queue;
-	}
 
 
-	public static void zipNode(ZipOutputStream zos, Deque<Item> queue, String login, org.gcube.common.storagehub.model.Path originalPath, StorageBackendHandler storageHandler) throws Exception{
-		logger.trace("originalPath is {}",originalPath.toPath());
-		org.gcube.common.storagehub.model.Path actualPath = Paths.getPath("");
-		while (!queue.isEmpty()) {
-			Item item = queue.pop();
-			if (item instanceof FolderItem) {
-				actualPath = Paths.getPath(item.getPath());
-				logger.debug("actualPath is {}",actualPath.toPath());
-				String name = Paths.remove(actualPath, originalPath).toPath().replaceFirst("/", "");
-				logger.debug("writing dir {}",name);
-				if (name.isEmpty()) continue;
-				try {
-					zos.putNextEntry(new ZipEntry(name));
-				}finally {
-					zos.closeEntry();
-				}
-			} else if (item instanceof AbstractFileItem){
-				try {
-					InputStream streamToWrite = storageHandler.download(((AbstractFileItem)item).getContent().getStorageId());
-					if (streamToWrite == null){
-						logger.warn("discarding item {} ",item.getName());
-						continue;
-					}
-					try(BufferedInputStream is = new BufferedInputStream(streamToWrite)){
-						String name = (Paths.remove(actualPath, originalPath).toPath()+item.getName()).replaceFirst("/", "");
-						logger.debug("writing file {}",name);
-						zos.putNextEntry(new ZipEntry(name));
-						copyStream(is, zos);
-					}catch (Exception e) {
-						logger.warn("error writing item {}", item.getName(),e);
-					} finally{
-						zos.closeEntry();
-					}
-					zos.flush();
-				}catch (Throwable e) {
-					logger.warn("error reading content for item {}", item.getPath(),e);
-				}
-			}
-		}
-		zos.close();
-	}
 
-	private static void copyStream(InputStream in, OutputStream out) throws IOException {
+	public static void copyStream(InputStream in, OutputStream out) throws IOException {
 		byte[] buffer = new byte[2048];
 		int readcount = 0;
 		while ((readcount=in.read(buffer))!=-1) {
@@ -234,56 +222,34 @@ public class Utils {
 
 	public static boolean hasSharedChildren(Node node) throws RepositoryException, BackendGenericError{
 		Node2ItemConverter node2Item = new Node2ItemConverter();
-		NodeIterator children = node.getNodes();
+		NodeChildrenFilterIterator children = new NodeChildrenFilterIterator(node);
 
 		while (children.hasNext()) {
-			Node child= children.nextNode();
+			Node child= children.next();
 			if (node2Item.checkNodeType(child, SharedFolder.class)) return true;
 			if (node2Item.checkNodeType(child, FolderItem.class) && hasSharedChildren(child)) return true;
 		}
 		return false;
 	}
 
-	public static void getAllContentIds(Session ses, Set<String> idsToDelete, Item itemToDelete, VersionHandler versionHandler) throws Exception{
-		if (itemToDelete instanceof AbstractFileItem) {
-			List<Version> versions = versionHandler.getContentVersionHistory(ses.getNodeByIdentifier(itemToDelete.getId()), ses);
-
-			versions.forEach(v -> {
-				try {
-					String storageId =v.getFrozenNode().getProperty(NodeProperty.STORAGE_ID.toString()).getString();
-					idsToDelete.add(storageId);
-					logger.info("retrieved StorageId {} for version {}", storageId, v.getName());
-				} catch (Exception e) {
-					logger.warn("error retreiving sotrageId version for item with id {}",itemToDelete.getId(),e);
-				}
-			});
-
-			idsToDelete.add(((AbstractFileItem) itemToDelete).getContent().getStorageId());
-		}else if (itemToDelete instanceof FolderItem) {
-			List<Item> items = Utils.getItemList(ses.getNodeByIdentifier(itemToDelete.getId()), Excludes.GET_ONLY_CONTENT , null, true, null);
-			for (Item item: items) 
-				getAllContentIds(ses, idsToDelete, item, versionHandler);
-
-		}
-
-	}
 
 	public static String checkExistanceAndGetUniqueName(Session ses, Node destination, String name) throws BackendGenericError{
+		String escapedName = Text.escapeIllegalJcrChars(name);
 		try {
-			destination.getNode(name);
+			destination.getNode(escapedName);
 		}catch(PathNotFoundException pnf) {
-			return  Text.escapeIllegalJcrChars(name);
+			return  escapedName;
 		} catch (Exception e) {
 			throw new BackendGenericError(e);
 		}
 
 		try {
-			String filename = FilenameUtils.getBaseName(name);
+			String filename = FilenameUtils.getBaseName(escapedName);
-			String ext = FilenameUtils.getExtension(name);
+			String ext = FilenameUtils.getExtension(escapedName);
 
 			String nameTocheck = ext.isEmpty()? String.format("%s(*)",filename): String.format("%s(*).%s",filename, ext);
 
-			logger.debug("filename is {}, extension is {} , and name to check is {}", filename, ext, nameTocheck);
+			logger.trace("filename is {}, extension is {} , and name to check is {}", filename, ext, nameTocheck);
 
 			NodeIterator ni = destination.getNodes(nameTocheck);
 			int maxval = 0;
@@ -296,35 +262,66 @@ public class Utils {
 
 
 			String newName = ext.isEmpty()? String.format("%s(%d)", filename,maxval+1) : String.format("%s(%d).%s", filename,maxval+1, ext) ;
-			return  Text.escapeIllegalJcrChars(newName);
+			return newName;
 		} catch (Exception e) {
 			throw new BackendGenericError(e);
 		}
 	}
 
-	public static Node createFolderInternally(Session ses, Node destinationNode, String name, String description, boolean hidden, String login, AccountingHandler accountingHandler) throws BackendGenericError {
 
-		String uniqueName = Utils.checkExistanceAndGetUniqueName(ses, destinationNode, name);
+	public static Node createFolderInternally(FolderCreationParameters params, AccountingHandler accountingHandler, boolean isInternalWSFolder) throws StorageHubException {
+		logger.debug("creating folder {} in {}", params.getName(), params.getParentId());
+
+		Node destinationNode;
+		FolderItem destinationItem;
+		try {
+			destinationNode = params.getSession().getNodeByIdentifier(params.getParentId());
+			destinationItem = (FolderItem) new Node2ItemConverter().getItem(destinationNode, Excludes.ALL);
+		}catch (RepositoryException  e) {
+			logger.error("id not found",e);
+			throw new IdNotFoundException(params.getParentId());
+		}
+		String uniqueName = Utils.checkExistanceAndGetUniqueName(params.getSession(), destinationNode, params.getName());
 
 		FolderItem item = new FolderItem();
 		Calendar now = Calendar.getInstance();
 		item.setName(uniqueName);
 		item.setTitle(uniqueName);
-		item.setDescription(description);
+		item.setDescription(params.getDescription());
+
+		if (isInternalWSFolder) {
+			item.setBackend(StorageBackendHandler.getDefaultPayloadForFolder());
+		} else {
+
+			if (params.getBackend() != null) 
+				item.setBackend(params.getBackend());
+			else {
+				if (destinationItem.getBackend() != null) 
+					item.setBackend(destinationItem.getBackend());
+				else 
+					item.setBackend(StorageBackendHandler.getDefaultPayloadForFolder());
+			}
+		}
+		//TODO: item.setExternalStorage();
 		//item.setCreationTime(now);
-		item.setHidden(hidden);
+
+		boolean hiddenDestNode= false;
+		try {
+			hiddenDestNode = destinationNode.getProperty(NodeProperty.HIDDEN.toString()).getBoolean();
+		}catch (Throwable e) {}
+
+		item.setHidden(params.isHidden() || hiddenDestNode);
 		item.setLastAction(ItemAction.CREATED);
 		item.setLastModificationTime(now);
-		item.setLastModifiedBy(login);
+		item.setLastModifiedBy(params.getUser());
-		item.setOwner(login);
+		item.setOwner(params.getUser());
 		item.setPublicItem(false);
 
-		//to inherit hidden property
-		//item.setHidden(destinationItem.isHidden());
-
 		Node newNode = new Item2NodeConverter().getNode(destinationNode, item);
-		if (accountingHandler!=null)
+		if (accountingHandler!=null) {
-			accountingHandler.createFolderAddObj(name, item.getClass().getSimpleName(), null, ses, newNode, false);
+			accountingHandler.createFolderAddObj(uniqueName, item.getClass().getSimpleName(), null, params.getSession(), params.getUser(), destinationNode, false);
+			accountingHandler.createEntryCreate(item.getTitle(), params.getSession(), newNode, params.getUser(), false);
+		}
 		return newNode;
 	}
 
@@ -345,12 +342,20 @@ public class Utils {
 		item.setPublicItem(false);
 		item.setValue(value);
 
-		//to inherit hidden property
+		try {
-		//item.setHidden(destinationItem.isHidden());
+			item.setHidden(destinationNode.getProperty(NodeProperty.HIDDEN.toString()).getBoolean());
+		} catch (Throwable e) {
+			item.setHidden(false);
+		} 
+
+
 
 		Node newNode = new Item2NodeConverter().getNode(destinationNode, item);
-		if (accountingHandler!=null)
+		
-			accountingHandler.createFolderAddObj(name, item.getClass().getSimpleName(), null, ses, newNode, false);
+		if (accountingHandler!=null) {
+			accountingHandler.createFolderAddObj(name, item.getClass().getSimpleName(), null, ses, login,  destinationNode, false);
+			accountingHandler.createEntryCreate(item.getTitle(), ses, newNode,login, false);
+		}
 		return newNode;
 	}
 
@@ -380,4 +385,12 @@ public class Utils {
 		node.setProperty(NodeProperty.LAST_MODIFIED_BY.toString(), login);
 		node.setProperty(NodeProperty.LAST_ACTION.toString(), action.name());
 	}
+
+	public static void setContentFromMetaInfo(AbstractFileItem item, MetaInfo contentInfo) {
+		item.getContent().setSize(contentInfo.getSize());
+		item.getContent().setRemotePath(contentInfo.getRemotePath());
+		item.getContent().setSize(contentInfo.getSize());
+		item.getContent().setPayloadBackend(contentInfo.getPayloadBackend());
+	}
+
 }

src/main/java/org/gcube/data/access/storagehub/accounting/AccountingHandler.java

@@ -4,22 +4,17 @@ import java.util.Calendar;
 import java.util.Set;
 import java.util.UUID;
 
-import javax.inject.Singleton;
 import javax.jcr.Node;
 import javax.jcr.RepositoryException;
 import javax.jcr.Session;
-import javax.jcr.UnsupportedRepositoryOperationException;
-import javax.jcr.version.Version;
-import javax.jcr.version.VersionHistory;
-import javax.jcr.version.VersionIterator;
-import javax.jcr.version.VersionManager;
 
-import org.gcube.common.authorization.library.provider.AuthorizationProvider;
 import org.gcube.common.storagehub.model.items.nodes.accounting.AccountingEntryType;
 import org.gcube.common.storagehub.model.types.NodeProperty;
 import org.slf4j.Logger;
 import org.slf4j.LoggerFactory;
 
+import jakarta.inject.Singleton;
+
 @Singleton
 public class AccountingHandler {
 
@@ -33,11 +28,12 @@ public class AccountingHandler {
 	private static final String OLD_ITEM_NAME = "hl:oldItemName";
 	private static final String NEW_ITEM_NAME = "hl:newItemName";
 	
+	private static final String BASE_VERSION ="1.0";
 	
 	
 	private static final Logger logger = LoggerFactory.getLogger(AccountingHandler.class);
 
-	public void createReadObj(String title, Session ses, Node node, boolean saveHistory ) {
+	public void createReadObj(String title, String version, Session ses, Node node, String login, boolean saveHistory ) {
 		try {
 						
 			if (!node.hasNode(NodeProperty.ACCOUNTING.toString())){
@@ -47,30 +43,39 @@ public class AccountingHandler {
 			
 			Node accountingNodeParent = node.getNode(NodeProperty.ACCOUNTING.toString());
 			Node accountingNode = accountingNodeParent.addNode(UUID.randomUUID().toString(),AccountingEntryType.READ.getNodeTypeDefinition());
-			accountingNode.setProperty(USER, AuthorizationProvider.instance.get().getClient().getId());
+			accountingNode.setProperty(USER, login);
 			accountingNode.setProperty(DATE, Calendar.getInstance());
 			accountingNode.setProperty(ITEM_NAME, title);
+			accountingNode.setProperty(VERSION_ACCOUNTING, version!=null?version:BASE_VERSION);
 			
-			try {
-				VersionManager vManager = ses.getWorkspace().getVersionManager();
-				VersionHistory history = vManager.getVersionHistory(node.getNode("jcr:content").getPath());
-				VersionIterator versions = history.getAllVersions();
-				Version version= null;
-				while (versions.hasNext()) {
-				  version = versions.nextVersion();
-				}
-				if (version!=null)
-					accountingNode.setProperty(VERSION_ACCOUNTING, version.getName());
-			}catch(UnsupportedRepositoryOperationException uropex) {
-				logger.warn("version cannot be retrieved", uropex);
-			}
 			if (saveHistory) ses.save();
 		} catch (RepositoryException e) {
 			logger.warn("error trying to retrieve accountign node",e);
 		}
 	}
 	
-	public void createFileUpdated(String title, Session ses, Node node, boolean saveHistory ) {
+	public void createEntryCreate(String title, Session ses, Node node, String login, boolean saveHistory ) {
+		try {
+						
+			if (!node.hasNode(NodeProperty.ACCOUNTING.toString())){
+				node.addNode(NodeProperty.ACCOUNTING.toString(), NodeProperty.NT_ACCOUNTING.toString());
+			}
+			
+			Node accountingNodeParent = node.getNode(NodeProperty.ACCOUNTING.toString());
+			Node accountingNode = accountingNodeParent.addNode(UUID.randomUUID().toString(),AccountingEntryType.CREATE.getNodeTypeDefinition());
+			accountingNode.setProperty(USER, login);
+			accountingNode.setProperty(DATE, Calendar.getInstance());
+			accountingNode.setProperty(ITEM_NAME, title);
+			accountingNode.setProperty(VERSION_ACCOUNTING, BASE_VERSION);
+			
+			
+			if (saveHistory) ses.save();
+		} catch (RepositoryException e) {
+			logger.warn("error trying to retrieve accountign node",e);
+		}
+	}
+	
+	public void createFileUpdated(String title, String version, Session ses, Node node, String login, boolean saveHistory ) {
 		try {
 					
 			if (!node.hasNode(NodeProperty.ACCOUNTING.toString())){
@@ -80,24 +85,33 @@ public class AccountingHandler {
 			Node accountingNodeParent = node.getNode(NodeProperty.ACCOUNTING.toString());
 			Node accountingNode = accountingNodeParent.addNode(UUID.randomUUID().toString(),AccountingEntryType.UPDATE.getNodeTypeDefinition());
 		
-			accountingNode.setProperty(USER, AuthorizationProvider.instance.get().getClient().getId());
+			accountingNode.setProperty(USER, login);
+			accountingNode.setProperty(DATE, Calendar.getInstance());
+			accountingNode.setProperty(ITEM_NAME, title);
+			accountingNode.setProperty(VERSION_ACCOUNTING, version);
+			
+			if (saveHistory) ses.save();
+		} catch (RepositoryException e) {
+			logger.warn("error trying to retrieve accountign node",e);
+		}
+	}
+	
+	public void createVersionDeleted(String title, String version, Session ses, Node node, String login, boolean saveHistory ) {
+		try {
+					
+			if (!node.hasNode(NodeProperty.ACCOUNTING.toString())){
+				node.addNode(NodeProperty.ACCOUNTING.toString(), NodeProperty.NT_ACCOUNTING.toString());
+			}
+			
+			Node accountingNodeParent = node.getNode(NodeProperty.ACCOUNTING.toString());
+			Node accountingNode = accountingNodeParent.addNode(UUID.randomUUID().toString(),AccountingEntryType.DELETE.getNodeTypeDefinition());
+			
+			
+			accountingNode.setProperty(USER, login);
 			accountingNode.setProperty(DATE, Calendar.getInstance());
 			accountingNode.setProperty(ITEM_NAME, title);
 			
-			try {
+			accountingNode.setProperty(VERSION_ACCOUNTING, version);
-				VersionManager vManager = ses.getWorkspace().getVersionManager();
-				VersionHistory history = vManager.getVersionHistory(node.getNode("jcr:content").getPath());
-				VersionIterator versions = history.getAllVersions();
-				Version version= null;
-				while (versions.hasNext()) {
-				  version = versions.nextVersion();
-				}
-				if (version!=null)
-					accountingNode.setProperty(VERSION_ACCOUNTING, version.getName());
-								
-			}catch(UnsupportedRepositoryOperationException uropex) {
-				logger.warn("version cannot be retrieved", uropex);
-			}
 			
 			
 			if (saveHistory) ses.save();
@@ -107,17 +121,17 @@ public class AccountingHandler {
 	}
 	
 	
-	public void createFolderAddObj(String title, String itemType, String mimeType, Session ses, Node node, boolean saveHistory ) {
+	public void createFolderAddObj(String title, String itemType, String mimeType, Session ses, String login, Node parentNode, boolean saveHistory ) {
 		try {
-			Node directoryNode = node.getParent();
 			
-			if (!directoryNode.hasNode(NodeProperty.ACCOUNTING.toString())){
+			
-				directoryNode.addNode(NodeProperty.ACCOUNTING.toString(), NodeProperty.NT_ACCOUNTING.toString());
+			if (!parentNode.hasNode(NodeProperty.ACCOUNTING.toString())){
+				parentNode.addNode(NodeProperty.ACCOUNTING.toString(), NodeProperty.NT_ACCOUNTING.toString());
 			}
 			
-			Node accountingNodeParent = directoryNode.getNode(NodeProperty.ACCOUNTING.toString());
+			Node accountingNodeParent = parentNode.getNode(NodeProperty.ACCOUNTING.toString());
 			Node accountingNode = accountingNodeParent.addNode(UUID.randomUUID().toString(),AccountingEntryType.ADD.getNodeTypeDefinition());
-			accountingNode.setProperty(USER, AuthorizationProvider.instance.get().getClient().getId());
+			accountingNode.setProperty(USER, login);
 			accountingNode.setProperty(DATE, Calendar.getInstance());
 			accountingNode.setProperty(ITEM_NAME, title);
 			accountingNode.setProperty(ITEM_TYPE, itemType);
@@ -130,7 +144,7 @@ public class AccountingHandler {
 		}
 	}
 	
-	public void createFolderRemoveObj(String title, String itemType, String mimeType, Session ses, Node parentNode, boolean saveHistory ) {
+	public void createFolderRemoveObj(String title, String itemType, String mimeType, Session ses, String login, Node parentNode, boolean saveHistory ) {
 		try {
 						
 			if (!parentNode.hasNode(NodeProperty.ACCOUNTING.toString())){
@@ -139,7 +153,7 @@ public class AccountingHandler {
 			
 			Node accountingNodeParent = parentNode.getNode(NodeProperty.ACCOUNTING.toString());
 			Node accountingNode = accountingNodeParent.addNode(UUID.randomUUID().toString(),AccountingEntryType.REMOVAL.getNodeTypeDefinition());
-			accountingNode.setProperty(USER, AuthorizationProvider.instance.get().getClient().getId());
+			accountingNode.setProperty(USER, login);
 			accountingNode.setProperty(DATE, Calendar.getInstance());
 			accountingNode.setProperty(ITEM_NAME, title);
 			accountingNode.setProperty(ITEM_TYPE, itemType);
@@ -152,7 +166,7 @@ public class AccountingHandler {
 		}
 	}
 	
-	public void createShareFolder(String title, Set<String> users, Session ses, Node sharedNode,  boolean saveHistory  ) {
+	public void createShareFolder(String title, Set<String> users, Session ses, Node sharedNode, String login,  boolean saveHistory  ) {
 		try {
 						
 			if (!sharedNode.hasNode(NodeProperty.ACCOUNTING.toString())){
@@ -161,7 +175,7 @@ public class AccountingHandler {
 			
 			Node accountingNodeParent = sharedNode.getNode(NodeProperty.ACCOUNTING.toString());
 			Node accountingNode = accountingNodeParent.addNode(UUID.randomUUID().toString(),AccountingEntryType.SHARE.getNodeTypeDefinition());
-			accountingNode.setProperty(USER, AuthorizationProvider.instance.get().getClient().getId());
+			accountingNode.setProperty(USER, login);
 			accountingNode.setProperty(DATE, Calendar.getInstance());
 			accountingNode.setProperty(ITEM_NAME, title);
 			accountingNode.setProperty(MEMBERS, users.toArray(new String[users.size()]));
@@ -172,7 +186,7 @@ public class AccountingHandler {
 		}
 	}
 	
-	public void createUnshareFolder(String title, Session ses, Node sharedNode,  boolean saveHistory  ) {
+	public void createUnshareFolder(String title,  Session ses, String user, Node sharedNode,  boolean saveHistory  ) {
 		try {
 						
 			if (!sharedNode.hasNode(NodeProperty.ACCOUNTING.toString())){
@@ -180,8 +194,8 @@ public class AccountingHandler {
 			}
 			
 			Node accountingNodeParent = sharedNode.getNode(NodeProperty.ACCOUNTING.toString());
-			Node accountingNode = accountingNodeParent.addNode(UUID.randomUUID().toString(),AccountingEntryType.SHARE.getNodeTypeDefinition());
+			Node accountingNode = accountingNodeParent.addNode(UUID.randomUUID().toString(),AccountingEntryType.UNSHARE.getNodeTypeDefinition());
-			accountingNode.setProperty(USER, AuthorizationProvider.instance.get().getClient().getId());
+			accountingNode.setProperty(USER, user);
 			accountingNode.setProperty(DATE, Calendar.getInstance());
 			accountingNode.setProperty(ITEM_NAME, title);
 			
@@ -191,7 +205,7 @@ public class AccountingHandler {
 		}
 	}
 	
-	public void createRename(String oldTitle, String newTitle, Node node, Session ses, boolean saveHistory  ) {
+	public void createRename(String oldTitle, String newTitle, Node node, String login, Session ses, boolean saveHistory  ) {
 		try {
 						
 			if (!node.hasNode(NodeProperty.ACCOUNTING.toString())){
@@ -200,7 +214,7 @@ public class AccountingHandler {
 			
 			Node accountingNodeParent = node.getNode(NodeProperty.ACCOUNTING.toString());
 			Node accountingNode = accountingNodeParent.addNode(UUID.randomUUID().toString(),AccountingEntryType.RENAMING.getNodeTypeDefinition());
-			accountingNode.setProperty(USER, AuthorizationProvider.instance.get().getClient().getId());
+			accountingNode.setProperty(USER, login);
 			accountingNode.setProperty(DATE, Calendar.getInstance());
 			accountingNode.setProperty(OLD_ITEM_NAME, oldTitle);
 			accountingNode.setProperty(NEW_ITEM_NAME, newTitle);

src/main/java/org/gcube/data/access/storagehub/exception/MyAuthException.java

@@ -1,16 +0,0 @@
-package org.gcube.data.access.storagehub.exception;
-
-import javax.ws.rs.WebApplicationException;
-import javax.ws.rs.core.Response.Status;
-
-public class MyAuthException extends WebApplicationException  {
-	  /**
-	 * 
-	 */
-	private static final long serialVersionUID = 1L;
-
-	public MyAuthException(Throwable cause) {
-		super(cause, Status.FORBIDDEN);
-	}
-
-}

src/main/java/org/gcube/data/access/storagehub/handlers/ACLHandler.java

@@ -0,0 +1,5 @@
+package org.gcube.data.access.storagehub.handlers;
+
+public class ACLHandler {
+
+}

src/main/java/org/gcube/data/access/storagehub/handlers/ClassHandler.java

@@ -1,11 +1,14 @@
 package org.gcube.data.access.storagehub.handlers;
 
+import java.util.Arrays;
 import java.util.HashMap;
+import java.util.List;
 import java.util.Map;
 import java.util.Set;
 
 import org.gcube.common.storagehub.model.annotations.RootNode;
 import org.gcube.common.storagehub.model.items.Item;
+import org.gcube.common.storagehub.model.items.RootItem;
 import org.reflections.Reflections;
 import org.slf4j.Logger;
 import org.slf4j.LoggerFactory;
@@ -24,31 +27,38 @@ public class ClassHandler {
 	
 	private Reflections reflection = new Reflections();
 
-	private Map<String, Class<? extends Item>> classMap = new HashMap<String, Class<? extends Item>>();
+	private List<String> deprecatedNode = Arrays.asList("nthl:query", "nthl:aquamapsItem", "nthl:timeSeriesItem", "nthl:report", "nthl:reportTemplate", "nthl:workflowReport",
-	private Map<Class<? extends Item>, String> typeMap = new HashMap<Class<? extends Item>, String>();
+			"nthl:workflowTemplate", "nthl:gCubeMetadata", "nthl:gCubeDocument", "nthl:gCubeDocumentLink", "nthl:gCubeImageDocumentLink", "nthl:gCubePDFDocumentLink",
+			"nthl:gCubeImageDocument", "nthl:gCubePDFDocument", "nthl:gCubeURLDocument", "nthl:gCubeAnnotation", "nthl:externalResourceLink", "nthl:tabularDataLink");
+	
+	private Map<String, Class<? extends RootItem>> classMap = new HashMap<String, Class<? extends RootItem>>();
+	private Map<Class<? extends RootItem>, String> typeMap = new HashMap<Class<? extends RootItem>, String>();
 
 
+	@SuppressWarnings("unchecked")
 	private ClassHandler() {
 
 		Set<Class<?>> classesAnnotated = reflection.getTypesAnnotatedWith(RootNode.class);
 		for (Class<?> clazz: classesAnnotated ){
-			if (Item.class.isAssignableFrom(clazz)) {
+			if (RootItem.class.isAssignableFrom(clazz) && clazz.isAnnotationPresent(RootNode.class)) {
-				String value =  clazz.getAnnotation(RootNode.class).value();
+				String[] values =  clazz.getAnnotation(RootNode.class).value();
-				log.debug("loading class {} with value {} ", clazz, value );
+				log.debug("loading class {} with values {} ", clazz, values );
-				classMap.put(value, (Class<? extends Item>) clazz);
+				for (String value: values)
-				typeMap.put((Class<? extends Item>) clazz, value);
+					classMap.put(value, (Class<? extends RootItem>) clazz);
+				typeMap.put((Class<? extends RootItem>) clazz, values[0]);
 			}
 		}
 	}
 	
 	
-	public Class<? extends Item> get(String nodeType){
+	public Class<? extends RootItem> get(String nodeType){
 		if (classMap.containsKey(nodeType)) return classMap.get(nodeType);
-		else return Item.class;
+		if (deprecatedNode.contains(nodeType)) return Item.class;
+		return null;
 		//throw new RuntimeException("mapping not found for nodetype "+ nodeType);
 	}
 
-	public String getNodeType(Class<? extends Item> clazz){
+	public String getNodeType(Class<? extends RootItem> clazz){
 		if (typeMap.containsKey(clazz)) return typeMap.get(clazz);
 		throw new RuntimeException("mapping not found for nodetype "+ clazz.getSimpleName());
 	}

src/main/java/org/gcube/data/access/storagehub/handlers/CompressHandler.java

@@ -0,0 +1,116 @@
+package org.gcube.data.access.storagehub.handlers;
+
+import java.io.BufferedInputStream;
+import java.io.InputStream;
+import java.util.Deque;
+import java.util.LinkedList;
+import java.util.List;
+import java.util.zip.ZipEntry;
+import java.util.zip.ZipOutputStream;
+
+import jakarta.inject.Inject;
+import javax.jcr.Node;
+import javax.jcr.RepositoryException;
+import javax.jcr.Session;
+import javax.jcr.version.Version;
+
+import org.gcube.common.storagehub.model.Excludes;
+import org.gcube.common.storagehub.model.Path;
+import org.gcube.common.storagehub.model.Paths;
+import org.gcube.common.storagehub.model.exceptions.BackendGenericError;
+import org.gcube.common.storagehub.model.items.AbstractFileItem;
+import org.gcube.common.storagehub.model.items.FolderItem;
+import org.gcube.common.storagehub.model.items.Item;
+import org.gcube.common.storagehub.model.storages.StorageBackend;
+import org.gcube.common.storagehub.model.storages.StorageBackendFactory;
+import org.gcube.data.access.storagehub.Utils;
+import org.gcube.data.access.storagehub.accounting.AccountingHandler;
+import org.gcube.data.access.storagehub.handlers.plugins.StorageBackendHandler;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
+
+public class CompressHandler {
+
+	private Logger logger = LoggerFactory.getLogger(CompressHandler.class);
+	
+	@Inject
+	StorageBackendHandler storageBackendHandler;
+	
+	@Inject
+	VersionHandler versionHandler;
+	
+	public Deque<Item> getAllNodesForZip(FolderItem directory, String login, Session session, AccountingHandler accountingHandler, List<String> excludes) throws RepositoryException, BackendGenericError{
+		Deque<Item> queue = new LinkedList<Item>();
+		Node currentNode = session.getNodeByIdentifier(directory.getId());
+		queue.push(directory);
+		Deque<Item> tempQueue = new LinkedList<Item>();
+		logger.trace("adding directory {}",currentNode.getPath());
+		for (Item item : Utils.getItemList(currentNode,Excludes.GET_ONLY_CONTENT, null, false, null)){
+			if (excludes.contains(item.getId())) continue;
+			if (item instanceof FolderItem) 
+				tempQueue.addAll(getAllNodesForZip((FolderItem) item, login, session, accountingHandler, excludes));
+			else if (item instanceof AbstractFileItem fileItem){
+				logger.trace("adding file {}",item.getPath());
+				String versionName = null;
+				try {
+					Version version = versionHandler.getCurrentVersion((Node) item.getRelatedNode());
+					versionName = version.getName();
+				}catch(RepositoryException e) {
+					logger.warn("current version of {} cannot be retreived", item.getId());
+				}
+				accountingHandler.createReadObj(fileItem.getTitle(), versionName, session, (Node) item.getRelatedNode(), login, false);
+				queue.addLast(item);
+			}
+		}
+		queue.addAll(tempQueue);
+		return queue;
+	}
+
+
+	public void zipNode(ZipOutputStream zos, Deque<Item> queue, Path originalPath) throws Exception{
+		logger.trace("originalPath is {}",originalPath.toPath());
+		Path actualPath = Paths.getPath("");
+		while (!queue.isEmpty()) {
+			Item item = queue.pop();
+			if (item instanceof FolderItem) {
+				actualPath = Paths.getPath(item.getPath());
+				logger.trace("actualPath is {}",actualPath.toPath());
+				String name = Paths.remove(actualPath, originalPath).toPath().replaceFirst("/", "");
+				logger.trace("writing dir {}",name);
+				if (name.isEmpty()) continue;
+				try {
+					zos.putNextEntry(new ZipEntry(name));
+				}finally {
+					zos.closeEntry();
+				}
+			} else if (item instanceof AbstractFileItem fileItem){
+				try {
+										
+					StorageBackendFactory sbf = storageBackendHandler.get(fileItem.getContent().getPayloadBackend());
+					
+					StorageBackend sb = sbf.create(fileItem.getContent().getPayloadBackend());
+					
+					InputStream streamToWrite = sb.download(fileItem.getContent());
+					if (streamToWrite == null){
+						logger.warn("discarding item {} ",item.getName());
+						continue;
+					}
+					try(BufferedInputStream is = new BufferedInputStream(streamToWrite)){
+						String name = (Paths.remove(actualPath, originalPath).toPath()+item.getName()).replaceFirst("/", "");
+						logger.trace("writing file {}",name);
+						zos.putNextEntry(new ZipEntry(name));
+						Utils.copyStream(is, zos);
+					}catch (Exception e) {
+						logger.warn("error writing item {}", item.getName(),e);
+					} finally{
+						zos.closeEntry();
+					}
+					zos.flush();
+				}catch (Throwable e) {
+					logger.warn("error reading content for item {}", item.getPath(),e);
+				}
+			}
+		}
+		zos.close();
+	}
+}

src/main/java/org/gcube/data/access/storagehub/handlers/CredentialHandler.java

@@ -1,18 +0,0 @@
-package org.gcube.data.access.storagehub.handlers;
-
-import javax.jcr.SimpleCredentials;
-import javax.servlet.ServletContext;
-
-import org.gcube.data.access.storagehub.Constants;
-
-public class CredentialHandler {
-
-	private static SimpleCredentials credentials;
-	
-	public static SimpleCredentials getAdminCredentials(ServletContext context) {
-		if (credentials==null) 
-			credentials = new SimpleCredentials(context.getInitParameter(Constants.ADMIN_PARAM_NAME),context.getInitParameter(Constants.ADMIN_PARAM_PWD).toCharArray());
-		return credentials;
-	}
-	
-}

src/main/java/org/gcube/data/access/storagehub/handlers/DataHandler.java

@@ -0,0 +1,150 @@
+package org.gcube.data.access.storagehub.handlers;
+
+import java.util.ArrayList;
+import java.util.Collections;
+import java.util.HashMap;
+import java.util.List;
+import java.util.Map;
+import java.util.stream.Collectors;
+
+import javax.jcr.Node;
+import javax.jcr.RepositoryException;
+
+import org.apache.jackrabbit.api.JackrabbitSession;
+import org.gcube.common.storagehub.model.acls.ACL;
+import org.gcube.common.storagehub.model.acls.AccessType;
+import org.gcube.common.storagehub.model.exceptions.StorageHubException;
+import org.gcube.common.storagehub.model.exporter.DumpData;
+import org.gcube.common.storagehub.model.exporter.GroupData;
+import org.gcube.common.storagehub.model.exporter.UserData;
+import org.gcube.common.storagehub.model.items.FolderItem;
+import org.gcube.common.storagehub.model.items.Item;
+import org.gcube.common.storagehub.model.types.SHUBUser;
+import org.gcube.data.access.storagehub.PathUtil;
+import org.gcube.data.access.storagehub.Utils;
+import org.gcube.data.access.storagehub.handlers.vres.VREManager;
+import org.gcube.data.access.storagehub.services.delegates.ACLManagerDelegate;
+import org.gcube.data.access.storagehub.services.delegates.GroupManagerDelegate;
+import org.gcube.data.access.storagehub.services.delegates.UserManagerDelegate;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
+
+import jakarta.inject.Inject;
+import jakarta.inject.Singleton;
+
+@Singleton
+public class DataHandler {
+
+	public static final Logger logger = LoggerFactory.getLogger(DataHandler.class);
+
+	@Inject
+	UserManagerDelegate userHandler;
+
+	@Inject
+	GroupManagerDelegate groupHandler;
+
+	@Inject
+	ACLManagerDelegate aclHandler;
+
+	@Inject
+	PathUtil pathUtil;
+	
+	@Inject
+	VREManager vreManager;
+
+	public DumpData exportData(JackrabbitSession session) throws RepositoryException,StorageHubException {
+		DumpData data = new DumpData();
+		
+		List<SHUBUser> users = userHandler.getAllUsers(session); 
+		
+		List<UserData> usersData = users.stream().map(u -> new UserData(u.getUserName()))
+				.collect(Collectors.toList());
+		
+		List<String> groups = groupHandler.getGroups(session);
+
+		logger.debug("found users {} ",usersData);
+		logger.debug("found groups {} ",groups);
+		
+		List<GroupData> groupsData = new ArrayList<GroupData>(groups.size());
+		for (String group : groups) {
+			logger.debug("searching for group {}",group);
+			Item vreFolderItem = vreManager.getVreFolderItemByGroupName(session, group, null).getVreFolder();
+			String owner = vreFolderItem.getOwner();
+			List<ACL> acls = aclHandler.getByItem(vreFolderItem, session);
+
+			AccessType accessType = AccessType.READ_ONLY;
+			List<ACL> otherAccess = new ArrayList<ACL>(acls.size() - 1);
+			for (ACL acl : acls)
+				if (acl.getPrincipal().equals(group))
+					accessType = acl.getAccessTypes().get(0);
+				else
+					otherAccess.add(acl);
+
+			List<String> members = groupHandler.getUsersBelongingToGroup(session, group);
+			
+			groupsData.add(new GroupData(group, owner, members, accessType, otherAccess));
+		}
+		
+		Map<String, List<Item>> itemsPerUser = new HashMap<String, List<Item>>();
+		for (SHUBUser user : users ) {
+			logger.debug("getting all the files in {} workspace folder ",user.getUserName());
+			String homePath = pathUtil.getWorkspacePath(user.getUserName()).toPath();
+			Node homeNode = session.getNode(homePath);
+			List<Item> items = Utils.getItemList(homeNode, Collections.emptyList(), null, true, null);
+			items.forEach(i -> i.setParentId(null));
+			itemsPerUser.put(user.getUserName(), retrieveSubItems(items));
+			
+		}
+
+		data.setUsers(usersData);
+		data.setGroups(groupsData);
+		data.setItemPerUser(itemsPerUser);
+		
+		return data;
+	}
+	
+	
+	List<Item> retrieveSubItems(List<Item> items) throws StorageHubException, RepositoryException {
+		List<Item> toReturn = new ArrayList<Item>();
+		for (Item item: items ) 
+			if (item instanceof FolderItem f) {
+				if (f.isShared()) continue;
+				toReturn.addAll(retrieveSubItems(Utils.getItemList((Node) f.getRelatedNode(), Collections.emptyList(), null, true, null)));
+			} else 
+				toReturn.add(item);
+		
+		return toReturn;
+	}
+
+	public void importData(JackrabbitSession session, DumpData data) {
+		data.getUsers().forEach(u -> {
+			try {
+				userHandler.createUser(session, u.getUserName(), "pwd");
+			} catch (RepositoryException | StorageHubException e) {
+				logger.warn("error importing user {} ", u.getUserName(), e);
+			}
+		});
+		
+		data.getGroups().forEach(g -> {
+			try {
+				groupHandler.createGroup(session, g.getName(), g.getAccessType(), g.getFolderOwner(), true);
+				for (String member : g.getMembers())
+					try {
+						groupHandler.addUserToGroup(session, member, g.getName());
+					}catch(Throwable t ) {
+						logger.warn("error adding user {} to group {}", member, g.getName(), t);
+					}
+				
+				Item vreFolderItem = vreManager.getVreFolderItemByGroupName(session, g.getName(), null).getVreFolder();
+				
+				for (ACL acl : g.getAcls()) {
+					aclHandler.update(acl.getPrincipal(), (Node)vreFolderItem.getRelatedNode(), acl.getAccessTypes().get(0), session);
+				}
+				
+			} catch (Throwable e) {
+				logger.warn("error importing group {} ", g.getName(), e);
+			}
+		});
+	}
+
+}

src/main/java/org/gcube/data/access/storagehub/handlers/DownloadHandler.java

@@ -0,0 +1,212 @@
+package org.gcube.data.access.storagehub.handlers;
+
+import java.io.InputStream;
+import java.io.OutputStream;
+import java.util.Deque;
+import java.util.List;
+import java.util.Map;
+import java.util.zip.Deflater;
+import java.util.zip.ZipOutputStream;
+
+import javax.jcr.Node;
+import javax.jcr.RepositoryException;
+import javax.jcr.Session;
+import javax.jcr.version.Version;
+
+import org.apache.commons.io.FilenameUtils;
+import org.gcube.common.storagehub.model.Excludes;
+import org.gcube.common.storagehub.model.Paths;
+import org.gcube.common.storagehub.model.exceptions.InvalidItemException;
+import org.gcube.common.storagehub.model.exceptions.PluginInitializationException;
+import org.gcube.common.storagehub.model.exceptions.PluginNotFoundException;
+import org.gcube.common.storagehub.model.exceptions.StorageHubException;
+import org.gcube.common.storagehub.model.exceptions.StorageIdNotFoundException;
+import org.gcube.common.storagehub.model.items.AbstractFileItem;
+import org.gcube.common.storagehub.model.items.FolderItem;
+import org.gcube.common.storagehub.model.items.Item;
+import org.gcube.common.storagehub.model.items.nodes.Content;
+import org.gcube.common.storagehub.model.items.nodes.PayloadBackend;
+import org.gcube.common.storagehub.model.storages.StorageBackend;
+import org.gcube.common.storagehub.model.storages.StorageBackendFactory;
+import org.gcube.common.storagehub.model.storages.StorageNames;
+import org.gcube.data.access.storagehub.SingleFileStreamingOutput;
+import org.gcube.data.access.storagehub.accounting.AccountingHandler;
+import org.gcube.data.access.storagehub.handlers.items.Node2ItemConverter;
+import org.gcube.data.access.storagehub.handlers.plugins.StorageBackendHandler;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
+
+import jakarta.inject.Inject;
+import jakarta.inject.Singleton;
+import jakarta.ws.rs.core.Response;
+import jakarta.ws.rs.core.StreamingOutput;
+
+@Singleton
+public class DownloadHandler {
+
+	private static final Logger log = LoggerFactory.getLogger(DownloadHandler.class);
+	
+	@Inject 
+	private AccountingHandler accountingHandler;
+	
+	@Inject
+	private StorageBackendHandler storageBackendHandler;
+	
+	@Inject
+	private CompressHandler compressHandler;
+
+	@Inject
+	private VersionHandler versionHandler;
+	
+	@Inject 
+	private Node2ItemConverter node2Item;
+	
+	public Response downloadFolderItem(Session ses, String login, FolderItem item, boolean withAccounting ) throws StorageHubException, RepositoryException {
+		try {	
+			final Deque<Item> allNodes = compressHandler.getAllNodesForZip((FolderItem)item, login, ses, accountingHandler, Excludes.GET_ONLY_CONTENT);
+			final org.gcube.common.storagehub.model.Path originalPath = Paths.getPath(item.getParentPath());
+			StreamingOutput so = new StreamingOutput() {
+
+				@Override
+				public void write(OutputStream os) {
+
+					try(ZipOutputStream zos = new ZipOutputStream(os)){
+						long start = System.currentTimeMillis();
+						zos.setLevel(Deflater.BEST_COMPRESSION);
+						log.debug("writing StreamOutput");
+						compressHandler.zipNode(zos, allNodes, originalPath);	
+						log.debug("StreamOutput written in {}",(System.currentTimeMillis()-start));
+					} catch (Exception e) {
+						log.error("error writing stream",e);
+					}
+
+				}
+			};
+
+			Response response = Response
+					.ok(so)
+					.header("content-disposition","attachment; filename = "+item.getTitle()+".zip")
+					.header("Content-Type", "application/zip")
+					.header("Content-Length", -1l)
+					.build();
+
+			if (withAccounting)
+				accountingHandler.createReadObj(item.getTitle(), null, ses, (Node) item.getRelatedNode(), login, false);
+			return response;
+		}finally {
+			if (ses!=null) ses.save();
+		}
+	}
+	
+	
+	public Response downloadFileItem(Session ses, AbstractFileItem fileItem, String login, boolean withAccounting) throws RepositoryException, PluginInitializationException, PluginNotFoundException, StorageHubException {
+
+		Content content = fileItem.getContent();
+
+		StorageBackendFactory sbf = storageBackendHandler.get(content.getPayloadBackend());
+
+		StorageBackend sb = sbf.create(content.getPayloadBackend());
+
+		InputStream streamToWrite = sb.download(content);
+
+		if (withAccounting) {
+			String versionName = null;
+			try {
+				Version version = versionHandler.getCurrentVersion((Node) fileItem.getRelatedNode());
+				versionName = version.getName();
+			}catch(RepositoryException e) {
+				log.warn("current version of {} cannot be retreived", fileItem.getId());
+			}
+			accountingHandler.createReadObj(fileItem.getTitle(), versionName, ses,  (Node) fileItem.getRelatedNode(), login, true);
+		}
+		StreamingOutput so = new SingleFileStreamingOutput(streamToWrite);
+
+		return Response
+				.ok(so)
+				.header("content-disposition","attachment; filename = "+fileItem.getName())
+				.header("Content-Length", fileItem.getContent().getSize())
+				.header("Content-Type", fileItem.getContent().getMimeType())
+				.build();
+
+	}
+	
+	public Response downloadVersionedItem(Session ses, String login, AbstractFileItem currentItem, String versionName, boolean withAccounting) throws RepositoryException, StorageHubException{
+		
+
+		List<Version> jcrVersions = versionHandler.getContentVersionHistory((Node)currentItem.getRelatedNode());
+
+		for (Version version: jcrVersions) {
+			log.debug("retrieved version id {}, name {}", version.getIdentifier(), version.getName());
+			if (version.getName().equals(versionName)) {
+				Content content = node2Item.getContentFromVersion(version);
+
+				StorageBackendFactory sbf = storageBackendHandler.get(content.getPayloadBackend());
+				StorageBackend sb = sbf.create(content.getPayloadBackend());
+
+				InputStream streamToWrite = null;
+				try { 
+					streamToWrite = sb.download(content);
+				}catch (StorageIdNotFoundException e) {
+					//TODO: temporary code, it will last until the MINIO porting will not finish
+					if (sbf.getName().equals(StorageNames.MONGO_STORAGE)) {
+						sbf = storageBackendHandler.get(StorageNames.DEFAULT_S3_STORAGE);
+						sbf.create(new PayloadBackend(StorageNames.DEFAULT_S3_STORAGE, null));
+					} else 
+						throw e;
+				}
+				
+				log.debug("retrieved storage id is {} with storageBackend {} (stream is null? {})",content.getStorageId(), sbf.getName(), streamToWrite==null );
+
+				String oldfilename = FilenameUtils.getBaseName(currentItem.getTitle());
+				String ext = FilenameUtils.getExtension(currentItem.getTitle());
+
+				String fileName = String.format("%s_v%s.%s", oldfilename, version.getName(), ext);
+
+				if (withAccounting)
+					accountingHandler.createReadObj(currentItem.getTitle(), versionName, ses,  (Node) currentItem.getRelatedNode(), login, true);
+				
+
+				StreamingOutput so = new SingleFileStreamingOutput(streamToWrite);
+
+				return Response
+						.ok(so)
+						.header("content-disposition","attachment; filename = "+fileName)
+						.header("Content-Length", content.getSize())
+						.header("Content-Type", content.getMimeType())
+						.build();
+			}
+		}
+		throw new InvalidItemException("the version is not valid");
+	}
+	
+	
+	public Response downloadFileFromStorageBackend(String storageId, String storageName) throws RepositoryException, PluginInitializationException, PluginNotFoundException, StorageHubException {
+
+		StorageBackendFactory sbf = storageBackendHandler.get(storageName);
+
+		StorageBackend sb = sbf.create(new PayloadBackend(storageName, null));
+
+		InputStream streamToWrite = sb.download(storageId);
+
+		Map<String, String> userMetadata = sb.getFileMetadata(storageId);
+
+		log.info("returned metadata from storageBackend are: {}", userMetadata);
+		
+		long size = Long.parseLong(userMetadata.get("size"));
+		
+		String title = userMetadata.get("title");
+		String contentType = userMetadata.get("content-type");
+				
+		StreamingOutput so = new SingleFileStreamingOutput(streamToWrite);
+
+		return Response
+				.ok(so)
+				.header("content-disposition","attachment; filename = "+title)
+				.header("Content-Length", size)
+				.header("Content-Type", contentType)
+				.build();
+
+	}
+	
+	
+}

src/main/java/org/gcube/data/access/storagehub/handlers/Node2ItemConverter.java

@@ -1,333 +0,0 @@
-package org.gcube.data.access.storagehub.handlers;
-
-import java.lang.reflect.Field;
-import java.net.URI;
-import java.net.URL;
-import java.util.ArrayList;
-import java.util.Arrays;
-import java.util.Calendar;
-import java.util.Collections;
-import java.util.HashMap;
-import java.util.HashSet;
-import java.util.List;
-import java.util.Map;
-import java.util.Set;
-
-import javax.inject.Singleton;
-import javax.jcr.Node;
-import javax.jcr.NodeIterator;
-import javax.jcr.PathNotFoundException;
-import javax.jcr.Property;
-import javax.jcr.PropertyIterator;
-import javax.jcr.PropertyType;
-import javax.jcr.RepositoryException;
-import javax.jcr.Value;
-
-import org.apache.commons.io.IOUtils;
-import org.apache.jackrabbit.util.Text;
-import org.gcube.common.storagehub.model.Excludes;
-import org.gcube.common.storagehub.model.annotations.Attribute;
-import org.gcube.common.storagehub.model.annotations.AttributeRootNode;
-import org.gcube.common.storagehub.model.annotations.ListNodes;
-import org.gcube.common.storagehub.model.annotations.MapAttribute;
-import org.gcube.common.storagehub.model.annotations.NodeAttribute;
-import org.gcube.common.storagehub.model.exceptions.BackendGenericError;
-import org.gcube.common.storagehub.model.items.Item;
-import org.gcube.common.storagehub.model.items.SharedFolder;
-import org.gcube.common.storagehub.model.items.TrashItem;
-import org.gcube.data.access.storagehub.Utils;
-import org.reflections.Configuration;
-import org.reflections.Reflections;
-import org.reflections.util.ConfigurationBuilder;
-import org.slf4j.Logger;
-import org.slf4j.LoggerFactory;
-
-@Singleton
-public class Node2ItemConverter {
-
-	private static final Logger logger = LoggerFactory.getLogger(Node2ItemConverter.class);
-	
-	private static HashMap<Class, Map<String, Class>> typeToSubtypeMap = new HashMap<>();
-	
-	public <T extends Item> T getFilteredItem(Node node, List<String> excludes, Class<? extends Item> nodeTypeToInclude) throws RepositoryException, BackendGenericError{
-		@SuppressWarnings("unchecked")
-		Class<T> classToHandle = (Class<T>)ClassHandler.instance().get(node.getPrimaryNodeType().getName());
-		if (nodeTypeToInclude!=null && !(nodeTypeToInclude.isAssignableFrom(classToHandle))) return null;
-		else return retrieveItem(node, excludes, classToHandle);
-	}
-
-	public <T extends Item> T getItem(Node node, List<String> excludes) throws RepositoryException, BackendGenericError{
-		@SuppressWarnings("unchecked")
-		Class<T> classToHandle = (Class<T>)ClassHandler.instance().get(node.getPrimaryNodeType().getName());
-		/*Node nodeToRetrieve= node;
-		if (SharedFolder.class.isAssignableFrom(classToHandle)) {
-			NodeIterator it= node.getSharedSet();
-			while (it.hasNext()) {
-				Node sharedNode = it.nextNode();
-				if (sharedNode.getPath().startsWith(Utils.getWorkspacePath().toPath())) {
-					nodeToRetrieve = sharedNode;
-				}
-					
-			}
-		}*/
-		return retrieveItem(node, excludes, classToHandle);
-	}
-
-
-	private <T extends Item> T retrieveItem(Node node, List<String> excludes, Class<T> classToHandle) throws RepositoryException, BackendGenericError{
-		T item;
-		try {
-			item = classToHandle.newInstance();
-		}catch (Exception e) {
-			throw new BackendGenericError(e);
-		}
-		item.setId(node.getIdentifier());
-		item.setName(Text.unescapeIllegalJcrChars(node.getName()));
-			
-		item.setPath(Text.unescapeIllegalJcrChars(node.getPath()));
-		
-		item.setLocked(node.isLocked());
-		item.setPrimaryType(node.getPrimaryNodeType().getName());
-		Item parent = null ;
-		if (item instanceof SharedFolder) {
-			logger.trace("I'm in a Shared Folder");
-			item.setShared(true);
-		}else {
-			try {
-				parent = getItem(node.getParent(), Excludes.ALL);
-				item.setShared(parent.isShared());
-			} catch(Exception e) {
-				item.setShared(false);
-			}
-		}
-
-		if (item instanceof TrashItem)
-			item.setTrashed(true);
-		else {
-			try {
-				if (parent==null)
-					parent = getItem(node.getParent(), Excludes.ALL);
-				item.setTrashed(parent.isTrashed());
-			} catch(Exception e) {
-				item.setTrashed(false);
-			}
-		}
-
-		try{
-			item.setParentId(node.getParent().getIdentifier());
-			item.setParentPath(node.getParent().getPath());
-		}catch (Throwable e) {
-			logger.trace("Root node doesn't have a parent");
-		}
-
-		for (Field field : retrieveAllFields(classToHandle)){
-			if (field.isAnnotationPresent(Attribute.class)){
-				Attribute attribute = field.getAnnotation(Attribute.class);
-				field.setAccessible(true);
-				try{
-					Class<?> returnType = field.getType();
-					field.set(item, getPropertyValue(returnType, node.getProperty(attribute.value())));
-					logger.debug("retrieve item - added field {}",field.getName());
-				}catch(PathNotFoundException e){
-					logger.trace("the current node dosn't contain {} property",attribute.value());
-				} catch (Exception e ) {
-					logger.warn("error setting value for property {} ",attribute.value());
-				}
-			} else if (field.isAnnotationPresent(NodeAttribute.class)){
-				String fieldNodeName = field.getAnnotation(NodeAttribute.class).value();
-				//for now it excludes only first level node
-				if (excludes!=null && excludes.contains(fieldNodeName)) continue;
-				logger.trace("retrieving field node "+field.getName());
-				field.setAccessible(true);
-				try{
-					Node fieldNode = node.getNode(fieldNodeName); 
-					logger.trace("looking in node {} searched with {}",fieldNode.getName(),fieldNodeName);
-					field.set(item, iterateNodeAttributeFields(field.getType(), fieldNode));
-				}catch(PathNotFoundException e){
-					logger.trace("the current node dosn't contain {} node",fieldNodeName);
-				} catch (Exception e ) {
-					logger.warn("error setting value",e);
-				}
-
-
-			}
-		}
-
-		return item;
-	}
-
-	private <T> T iterateNodeAttributeFields(Class<T> clazz, Node node) throws Exception{
-		T obj = clazz.newInstance();
-		for (Field field : retrieveAllFields(clazz)){
-			if (field.isAnnotationPresent(Attribute.class)){
-				Attribute attribute = field.getAnnotation(Attribute.class);
-				field.setAccessible(true);
-				try{
-					@SuppressWarnings("rawtypes")
-					Class returnType = field.getType();
-					field.set(obj, getPropertyValue(returnType, node.getProperty(attribute.value())));
-				}catch(PathNotFoundException e){
-					logger.trace("the current node dosn't contain {} property",attribute.value());
-				} catch (Exception e ) {
-					logger.warn("error setting value {}",e.getMessage());
-				}
-			} else if (field.isAnnotationPresent(MapAttribute.class)){
-				logger.trace("found field {} of type annotated as MapAttribute in class {} and node name {}", field.getName(), clazz.getName(), node.getName());
-				field.setAccessible(true);
-				String exclude = field.getAnnotation(MapAttribute.class).excludeStartWith();
-				Map<String, Object> mapToset = new HashMap<String, Object>();
-				PropertyIterator iterator = node.getProperties();
-				if (iterator!=null) {
-					while (iterator.hasNext()){
-						Property prop = iterator.nextProperty();
-						if (!exclude.isEmpty() && prop.getName().startsWith(exclude)) continue;
-						try{
-							logger.trace("adding {} in the map",prop.getName());
-
-							mapToset.put(prop.getName(), getPropertyValue(prop));
-						}catch(PathNotFoundException e){
-							logger.warn("the property {}  is not mapped",prop.getName());
-						} catch (Exception e ) {
-							logger.warn("error setting value {}",e.getMessage());
-						}
-					}
-				}
-				field.set(obj, mapToset);
-			} else if (field.isAnnotationPresent(ListNodes.class)){
-				logger.trace("found field {} of type annotated as ListNodes in class {} on node {}", field.getName(), clazz.getName(), node.getName());
-				field.setAccessible(true);
-				String exclude = field.getAnnotation(ListNodes.class).excludeTypeStartWith();
-				String include = field.getAnnotation(ListNodes.class).includeTypeStartWith();
-
-				Class listType = field.getAnnotation(ListNodes.class).listClass();
-
-				Map<String, Class> subTypesMap = Collections.emptyMap();
-
-				if (!typeToSubtypeMap.containsKey(listType)) {
-
-
-					Configuration config = new ConfigurationBuilder().forPackages(listType.getPackage().getName());
-					Reflections reflections = new Reflections(config);
-					Set<Class> subTypes = reflections.getSubTypesOf(listType);
-
-
-					if (subTypes.size()>0) {
-						subTypesMap = new HashMap<>();
-						for (Class subtype: subTypes) 
-							if (subtype.isAnnotationPresent(AttributeRootNode.class)) {
-								AttributeRootNode attributeRootNode = (AttributeRootNode)subtype.getAnnotation(AttributeRootNode.class);
-								subTypesMap.put(attributeRootNode.value(), subtype);
-							}
-					} else logger.trace("no subtypes found for {}",listType.getName());
-
-					typeToSubtypeMap.put(listType, subTypesMap);
-
-				} else {
-					logger.info("subtypes already found in cache");
-					subTypesMap = typeToSubtypeMap.get(listType);
-				}
-
-				List<Object> toSetList = new ArrayList<>();
-
-				NodeIterator iterator = node.getNodes();
-
-				while (iterator.hasNext()){
-					Node currentNode = iterator.nextNode();
-
-					String primaryType = currentNode.getPrimaryNodeType().getName();
-
-					logger.trace("the current node {} has a list",currentNode.getName());
-
-					if (!include.isEmpty() && !primaryType.startsWith(include))
-						continue;
-					if (!exclude.isEmpty() && primaryType.startsWith(exclude))
-						continue;
-					if (subTypesMap.containsKey(primaryType))
-						toSetList.add(iterateNodeAttributeFields(subTypesMap.get(primaryType), currentNode));
-					else toSetList.add(iterateNodeAttributeFields(listType, currentNode));
-				}
-				if (toSetList.size()!=0) field.set(obj, toSetList);
-			}
-		}
-		return obj;
-	}
-
-	@SuppressWarnings({ "rawtypes", "unchecked" })
-	private Object getPropertyValue(Class returnType, Property prop) throws Exception{
-		if (returnType.equals(String.class))  return prop.getString();
-		if (returnType.isEnum())  return Enum.valueOf(returnType, prop.getString());
-		if (returnType.equals(Calendar.class))  return prop.getDate();
-		if (returnType.equals(URL.class))  return new URI(prop.getString()).toURL();
-		if (returnType.equals(Boolean.class) || returnType.equals(boolean.class))  return prop.getBoolean();
-		if (returnType.equals(Long.class) || returnType.equals(long.class)) return prop.getLong();
-		if (returnType.equals(Integer.class) || returnType.equals(int.class)) return prop.getLong();
-		if (returnType.isArray()) {
-			if (prop.getType()==PropertyType.BINARY) {
-				byte[] bytes = IOUtils.toByteArray(prop.getBinary().getStream());
-				return bytes;	
-			} else {
-				Object[] ret= getArrayValue(prop);
-				return Arrays.copyOf(ret, ret.length, returnType);
-			}
-		} 
-		throw new Exception(String.format("class %s not recognized",returnType.getName()));
-	}
-
-	private static Set<Field> retrieveAllFields(Class<?> clazz){
-
-		Set<Field> fields = new HashSet<Field>();
-		Class<?> currentClass = clazz;
-		do{
-			List<Field> fieldsFound = Arrays.asList(currentClass.getDeclaredFields());
-			fields.addAll(fieldsFound);
-		}while ((currentClass =currentClass.getSuperclass())!=null);
-		return fields;
-	}
-	
-	private Object getPropertyValue(Property prop) throws Exception{
-		if (prop.isMultiple()){
-			Object[] values = new Object[prop.getValues().length];
-			int i = 0;
-			for (Value value : prop.getValues())
-				values[i++] = getSingleValue(value);
-			return values;
-		} else
-			return getSingleValue(prop.getValue());
-
-	}
-	
-	private Object getSingleValue(Value value) throws Exception{
-		switch (value.getType()) {
-		case PropertyType.DATE:
-			return value.getDate();
-		case PropertyType.BOOLEAN:
-			return value.getBoolean();
-		case PropertyType.LONG:
-			return value.getDate();
-		default:
-			return value.getString();
-		}
-	}
-	
-	private Object[] getArrayValue(Property prop) throws Exception{
-		Object[] values = new Object[prop.getValues().length];
-		int i = 0;
-		for (Value value : prop.getValues())
-			values[i++] = getSingleValue(value);
-		return values;
-	}
-
-	public boolean checkNodeType(Node node, Class<? extends Item> classToCompare) throws BackendGenericError{
-		try {
-			
-			logger.info("class from nodetype is {} and class to compare is {}",ClassHandler.instance().get(node.getPrimaryNodeType().getName()), classToCompare);
-			
-			return classToCompare.isAssignableFrom(ClassHandler.instance().get(node.getPrimaryNodeType().getName()));
-					
-			//(node.isNodeType(ClassHandler.instance().getNodeType(classToCompare)));
-		}catch (Throwable e) {
-			throw new BackendGenericError(e);
-		}
-	}
-	
-}

src/main/java/org/gcube/data/access/storagehub/handlers/PublicLinkHandler.java

@@ -0,0 +1,143 @@
+package org.gcube.data.access.storagehub.handlers;
+
+import static org.gcube.common.storagehub.model.Constants.enchriptedPrefix;
+import static org.gcube.common.storagehub.model.Constants.enchriptedVolatile;
+import static org.gcube.common.storagehub.model.Constants.versionPrefix;
+
+import java.util.Base64;
+
+import jakarta.inject.Singleton;
+import jakarta.servlet.ServletContext;
+
+import org.gcube.common.encryption.encrypter.StringEncrypter;
+import org.gcube.common.security.AuthorizedTasks;
+import org.gcube.common.security.secrets.Secret;
+import org.gcube.common.storagehub.model.exceptions.BackendGenericError;
+import org.gcube.common.storagehub.model.exceptions.StorageHubException;
+import org.gcube.data.access.storagehub.types.LinkType;
+import org.gcube.data.access.storagehub.types.PublicLink;
+import org.gcube.smartgears.ContextProvider;
+
+@Singleton
+public class PublicLinkHandler {
+
+	public String getForItem(String itemId, ServletContext context) throws BackendGenericError{
+		return getUrl(itemId, enchriptedPrefix, context);
+	}
+
+	public String getForVersionedItem(String itemId, String version, ServletContext context) throws BackendGenericError {
+		return getUrl(String.format("%s%s%s",itemId, versionPrefix, version), enchriptedPrefix, context);
+	}
+
+	public String getForVolatile(String fileId, String storageName, ServletContext context) throws BackendGenericError {
+		return getUrl(String.format("%s_%s",fileId, storageName), enchriptedVolatile, context);
+	}
+
+	public PublicLink resolveEnchriptedId(String enchriptedId) throws StorageHubException {
+
+		String complexId = enchriptedId;
+		boolean isVolatile = false;
+		if (enchriptedId.startsWith(enchriptedPrefix) || enchriptedId.startsWith(enchriptedVolatile) ) {
+			final String enchriptedValue = enchriptedId.startsWith(enchriptedPrefix) ? enchriptedPrefix : enchriptedVolatile;
+			isVolatile = enchriptedId.startsWith(enchriptedVolatile);
+
+			try {
+				String infraContext = String.format("/%s", ContextProvider.get().container().configuration().infrastructure()); 
+
+				Secret infraSecret = ContextProvider.get().container().authorizationProvider().getSecretForContext(infraContext);
+
+				complexId = AuthorizedTasks.executeSafely(() -> {
+					return StringEncrypter.getEncrypter().decrypt(
+							new String(Base64.getUrlDecoder().decode(enchriptedId.replace(enchriptedValue, ""))));
+				},  infraSecret);
+
+			}catch(Throwable e){
+				throw new BackendGenericError("invalid public url",e);
+			}
+		}
+
+		if (isVolatile) {
+			String[] volatileIdSplit = complexId.split("_");
+			return new VolatilePublicLink(volatileIdSplit[0], volatileIdSplit[1]);
+		}else {
+			if (complexId.contains(versionPrefix)) {
+				String[] split = complexId.split(versionPrefix);
+				String itemId = split[0];
+				String versionName = split[1];
+
+				return new ItemPublicLink(itemId, versionName);
+			} else 
+				return new ItemPublicLink(complexId);
+		}
+	}
+
+	private String getUrl(String toEnchript, String prefix, ServletContext context) throws BackendGenericError{
+		String infraContext = String.format("/%s", ContextProvider.get().container().configuration().infrastructure()); 
+		Secret infraSecret = ContextProvider.get().container().authorizationProvider().getSecretForContext(infraContext);
+
+
+		try {
+			String enchriptedQueryString = AuthorizedTasks.executeSafely(
+					() -> {return StringEncrypter.getEncrypter().encrypt(toEnchript);},infraSecret); 
+
+
+			String basepath = context.getInitParameter("resolver-basepath");
+			String filePublicUrl = String.format("%s/%s%s",basepath, prefix, Base64.getUrlEncoder().encodeToString(enchriptedQueryString.getBytes()));
+
+			return  filePublicUrl;
+		}catch (Throwable e) {
+			throw new BackendGenericError("error encrypting item id",e );
+		}
+	}
+
+	public static class VolatilePublicLink implements PublicLink {
+		
+		private String storageKey;
+		
+		private String storageName; 
+		
+		protected VolatilePublicLink(String storageKey, String storageName){
+			this.storageKey = storageKey;
+			this.storageName = storageName;
+		}
+		
+		@Override
+		public LinkType getType() {return LinkType.VOLATILE;}
+
+		@Override
+		public String getId() {	return storageKey; }
+		
+		@Override
+		public String getStorageName() {	return storageName; }
+	}
+	
+	public static class ItemPublicLink implements PublicLink {
+		
+		private String itemId; 
+		private String version; 
+		private LinkType type;
+		
+		protected ItemPublicLink(String itemId){
+			this.itemId = itemId;
+			this.type = LinkType.STANDARD;
+		}
+		
+		protected ItemPublicLink(String itemId, String version){
+			this.itemId = itemId;
+			this.version = version;
+			this.type = LinkType.VERSIONED;
+		}
+		
+		@Override
+		public LinkType getType() {return type;}
+
+		@Override
+		public String getId() {	return itemId; }
+		
+		@Override
+		public String getVersion() { return version; }
+		
+	}
+
+
+}

src/main/java/org/gcube/data/access/storagehub/handlers/StorageBackendHandler.java

@@ -1,51 +0,0 @@
-package org.gcube.data.access.storagehub.handlers;
-
-import java.io.InputStream;
-
-import javax.inject.Inject;
-import javax.inject.Singleton;
-
-import org.gcube.common.storagehub.model.items.AbstractFileItem;
-import org.gcube.common.storagehub.model.items.FolderItem;
-import org.gcube.common.storagehub.model.items.Item;
-import org.gcube.common.storagehub.model.storages.MetaInfo;
-import org.gcube.data.access.storagehub.storage.backend.impl.GCubeStorageBackend;
-
-
-@Singleton
-public class StorageBackendHandler {
-
-	@Inject
-	private GCubeStorageBackend defaultBackend;
-	
-	
-	public String move(Item item, FolderItem destination) {
-		//if item is a folder we have to move everything
-		return defaultBackend.move(((AbstractFileItem) item).getContent().getStorageId());
-	}
-	
-	public String copy(AbstractFileItem item) {
-		return defaultBackend.copy(item.getContent().getStorageId(), item.getContent().getRemotePath());
-	}
-	
-	public MetaInfo upload(InputStream stream, String itemPath) { 
-		return defaultBackend.upload(stream, itemPath);
-	}
-	
-	public InputStream download(String id) {
-		return defaultBackend.getContent(id);
-	}
-	
-	public void delete(String id) {
-		defaultBackend.delete(id);
-	}
-	
-	public String getTotalVolume() {
-		return defaultBackend.getTotalSizeStored();
-	}
-	
-	public String getTotalItemsCount() {
-		return defaultBackend.getTotalItemsCount();
-	}
-	
-}

src/main/java/org/gcube/data/access/storagehub/handlers/TrashHandler.java

@@ -1,35 +1,46 @@
 package org.gcube.data.access.storagehub.handlers;
 
 import java.util.Calendar;
+import java.util.Collection;
 import java.util.HashSet;
 import java.util.List;
 import java.util.Set;
+import java.util.concurrent.ExecutorService;
+import java.util.concurrent.Executors;
+import java.util.stream.Collectors;
 
-import javax.inject.Inject;
+import jakarta.inject.Inject;
-import javax.inject.Singleton;
+import jakarta.inject.Singleton;
+import javax.jcr.ItemNotFoundException;
 import javax.jcr.Node;
 import javax.jcr.RepositoryException;
 import javax.jcr.Session;
 import javax.jcr.lock.LockException;
+import javax.jcr.version.Version;
 
-import org.gcube.common.authorization.library.AuthorizedTasks;
+import org.gcube.common.security.AuthorizedTasks;
-import org.gcube.common.authorization.library.provider.AuthorizationProvider;
 import org.gcube.common.storagehub.model.Excludes;
 import org.gcube.common.storagehub.model.Paths;
 import org.gcube.common.storagehub.model.exceptions.BackendGenericError;
+import org.gcube.common.storagehub.model.exceptions.InvalidCallParameters;
 import org.gcube.common.storagehub.model.exceptions.ItemLockedException;
 import org.gcube.common.storagehub.model.exceptions.StorageHubException;
-import org.gcube.common.storagehub.model.exceptions.UserNotAuthorizedException;
 import org.gcube.common.storagehub.model.items.AbstractFileItem;
 import org.gcube.common.storagehub.model.items.FolderItem;
 import org.gcube.common.storagehub.model.items.Item;
 import org.gcube.common.storagehub.model.items.TrashItem;
+import org.gcube.common.storagehub.model.items.nodes.Content;
+import org.gcube.common.storagehub.model.storages.StorageBackend;
+import org.gcube.common.storagehub.model.storages.StorageBackendFactory;
 import org.gcube.common.storagehub.model.types.ItemAction;
-import org.gcube.contentmanagement.blobstorage.service.IClient;
 import org.gcube.data.access.storagehub.AuthorizationChecker;
-import org.gcube.data.access.storagehub.Constants;
+import org.gcube.data.access.storagehub.PathUtil;
 import org.gcube.data.access.storagehub.Utils;
 import org.gcube.data.access.storagehub.accounting.AccountingHandler;
+import org.gcube.data.access.storagehub.handlers.items.Item2NodeConverter;
+import org.gcube.data.access.storagehub.handlers.items.Node2ItemConverter;
+import org.gcube.data.access.storagehub.handlers.plugins.StorageBackendHandler;
+import org.gcube.data.access.storagehub.types.ContentPair;
 import org.slf4j.Logger;
 import org.slf4j.LoggerFactory;
 
@@ -38,64 +49,130 @@ public class TrashHandler {
 
 	private static Logger log = LoggerFactory.getLogger(TrashHandler.class);
 
-	@Inject
+	ExecutorService executor = Executors.newFixedThreadPool(100);
-	VersionHandler versionHandler;
 
 	@Inject
-	AccountingHandler accountingHandler;
+	VersionHandler versionHandler;
 
 	@Inject
 	AuthorizationChecker authChecker;
 
+	@Inject 
+	AccountingHandler accountingHandler;
+
 	@Inject
 	Item2NodeConverter item2Node;
 
 	@Inject
-	StorageBackendHandler storageHandler;
+	Node2ItemConverter node2Item;
+
+	@Inject 
+	PathUtil pathUtil;
+
+	@Inject
+	StorageBackendHandler storageBackendHandler;
 	
 	public void removeNodes(Session ses, List<Item> itemsToDelete) throws RepositoryException, StorageHubException{
 		log.debug("defnitively removing nodes with ids {}",itemsToDelete);
 		for (Item item: itemsToDelete) {
-			removeNodesInternally(ses, item);
+			removeNodesInternally(ses, item, false);
 		}
 	}
 
-	private void removeNodesInternally(Session ses, Item itemToDelete) throws RepositoryException, StorageHubException {
+	public void removeOnlyNodesContent(Session ses, List<Item> itemsToDelete) throws RepositoryException, StorageHubException{
+		log.debug("defnitively removing nodes with ids {}",itemsToDelete);
+		for (Item item: itemsToDelete) {
+			removeNodesInternally(ses, item, true);
+		}
+	}
+
+	private void retrieveItemsToDelete(Set<AbstractFileItem> itemsToDelete, Item itemToDelete) throws Exception{
+		if (itemToDelete instanceof AbstractFileItem) {
+			itemsToDelete.add(((AbstractFileItem) itemToDelete));
+		}else if (itemToDelete instanceof FolderItem) {
+			//only to be sure to not delete shared content
+			if (itemToDelete.isShared()) return;
+
+			List<Item> items = Utils.getItemList((Node) itemToDelete.getRelatedNode(), Excludes.GET_ONLY_CONTENT , null, true, null);
+			for (Item item: items) 
+				retrieveItemsToDelete(itemsToDelete, item);
+		}
+	}
+
+	private Set<ContentPair> retrieveContentToDelete(Collection<AbstractFileItem> itemsToDelete) {
+		Set<ContentPair> contentSet = new HashSet<ContentPair>();
+		for (AbstractFileItem item: itemsToDelete) {
+			if (item.getContent()== null || item.getContent().getStorageId()==null) {
+				log.warn("item with id {} contains null content",item.getId());
+				continue;
+			}
 
 			try {
-			Set<String> contentIdsToDelete = new HashSet<>();
 				
-			Node nodeToDelete = ses.getNodeByIdentifier(itemToDelete.getId());
+				
+				StorageBackendFactory sbf = storageBackendHandler.get(item.getContent().getPayloadBackend());
+				
+				StorageBackend sb = sbf.create(item.getContent().getPayloadBackend());
+				
+				contentSet.add(new ContentPair(item.getContent(), sb));
+
+				List<Version> versions = versionHandler.getContentVersionHistory((Node)item.getRelatedNode());
+
+				for (Version version: versions) {
+					try {
+						Content content = node2Item.getContentFromVersion(version);
+						if (content!= null && content.getStorageId()!=null)
+							contentSet.add(new ContentPair(content, sb));
+						else log.warn("invalid version {}",version.getName());
+					}catch (Throwable t) {
+						log.warn("error retrieving version content for {}",version.getName(),t);
+					}
+				}
+			}catch (Exception e) {
+				log.warn("item with id {} cannot be deleted",item.getId(),e);
+			}
+
+		}
+		return contentSet;
+	}
+
+
+	private void removeNodesInternally(Session ses, Item itemToDelete, boolean onlyContent) throws RepositoryException, StorageHubException {
+
+		try {
+			Set<AbstractFileItem> itemsToDelete = new HashSet<>();
+			Node nodeToDelete = (Node) itemToDelete.getRelatedNode();
 
 			if (itemToDelete instanceof TrashItem) {
 				List<Item> trashChildren = Utils.getItemList(nodeToDelete, Excludes.GET_ONLY_CONTENT, null, true, null);
 				for (Item itemContentToRetrieve: trashChildren)
-					Utils.getAllContentIds(ses, contentIdsToDelete, itemContentToRetrieve, versionHandler);
+					retrieveItemsToDelete(itemsToDelete, itemContentToRetrieve);
-			} else {
+			} else 
-				Utils.getAllContentIds(ses, contentIdsToDelete, itemToDelete, versionHandler);
+				retrieveItemsToDelete(itemsToDelete, itemToDelete);
-			}
+
+			if (!onlyContent)
 				nodeToDelete.remove();
 
-			log.debug("content ids to remove are {}",contentIdsToDelete);
+			String ids = itemsToDelete.stream().map((i) -> i.getId()).collect(Collectors.joining(","));
+			log.debug("content ids to remove are {}",ids);
+
+			Set<ContentPair> contentToDelete = retrieveContentToDelete(itemsToDelete);
 
-			String user = AuthorizationProvider.instance.get().getClient().getId();
 			Runnable deleteFromStorageRunnable = AuthorizedTasks.bind(new Runnable() {
-				
 				@Override
 				public void run() {
-					for (String id: contentIdsToDelete) {
+					for (ContentPair cp: contentToDelete ) {
 						try {
-							storageHandler.delete(id);
+							cp.getStorageBackend().delete(cp.getContent().getStorageId());
-							log.debug("file with id {} correctly removed on storage",id);
+							log.debug("file with id {} correctly removed from storage {}",cp.getContent().getStorageId(),cp.getStorageBackend().getClass().getSimpleName());
 						}catch(Throwable t) {
-							log.warn("error removing file on storage with id {}",id, t);
+							log.warn("error removing file  with id {} from storage {}",cp.getContent().getStorageId(), cp.getStorageBackend().getClass().getSimpleName(), t);
 						}
 					}
-					
 				}
 			});
-			new Thread(deleteFromStorageRunnable).start();
+			executor.execute(deleteFromStorageRunnable);
-			
+			if (!onlyContent)
 				ses.save();
 		}catch (LockException e) {
 			throw new ItemLockedException("the selected node or his parent is locked", e);
@@ -104,20 +181,20 @@ public class TrashHandler {
 		}
 	}
 
-	public void moveToTrash(Session ses, Node nodeToDelete, Item item) throws RepositoryException, BackendGenericError{
+
+	public void moveToTrash(Session ses, Node nodeToDelete, Item item, String login) throws RepositoryException, BackendGenericError{
 		log.debug("moving node {} to trash ",item.getId());
-		final Node trashFolder = ses.getNode(Paths.append(Utils.getWorkspacePath(),Constants.TRASH_ROOT_FOLDER_NAME).toPath());
-
-		final String login = AuthorizationProvider.instance.get().getClient().getId();
 
+		final Node trashFolder = ses.getNode(pathUtil.getTrashPath(login, ses).toPath());
 		try {
+
 			ses.getWorkspace().getLockManager().lock(trashFolder.getPath(), true, true, 0,login);
 			ses.getWorkspace().getLockManager().lock(nodeToDelete.getPath(), true, true, 0,login);
 
 			log.debug("preparing thrash item");
 
 			TrashItem trashItem = new TrashItem();
-			trashItem.setDeletedBy(AuthorizationProvider.instance.get().getClient().getId());
+			trashItem.setDeletedBy(login);
 			trashItem.setDeletedFrom(nodeToDelete.getParent().getPath());
 			Calendar now = Calendar.getInstance();
 			trashItem.setDeletedTime(now);
@@ -131,7 +208,7 @@ public class TrashHandler {
 			trashItem.setName(item.getId());
 			trashItem.setOriginalParentId(nodeToDelete.getParent().getIdentifier());	
 
-			trashItem.setOwner(item.getOwner());
+			trashItem.setOwner(login);
 			trashItem.setLastModificationTime(item.getLastModificationTime());
 			trashItem.setLastModifiedBy(item.getLastModifiedBy());
 
@@ -139,8 +216,7 @@ public class TrashHandler {
 
 			if (item instanceof FolderItem) { 
 				trashItem.setFolder(true);
-			}else if (item instanceof AbstractFileItem ) {
+			}else if (item instanceof AbstractFileItem file) {
-				AbstractFileItem file = (AbstractFileItem) item;
 				if (file.getContent()!=null) {
 					trashItem.setMimeType(file.getContent().getMimeType());
 					trashItem.setLenght(file.getContent().getSize());
@@ -156,12 +232,12 @@ public class TrashHandler {
 			log.debug("calling jcr move");
 			ses.getWorkspace().move(nodeToDelete.getPath(), Paths.append(Paths.getPath(newTrashItemNode.getPath()),nodeToDelete.getName()).toPath());
 			String mimetype = null;
-			if (item instanceof AbstractFileItem) {
+			if (item instanceof AbstractFileItem file) {
-				if (((AbstractFileItem)item).getContent()!=null)
+				if (file.getContent()!=null)
-					mimetype = ((AbstractFileItem) item).getContent().getMimeType();
+					mimetype = file.getContent().getMimeType();
-				else log.warn("the AbstractFileItem with id {} has no content (check it!!)", item.getId());
+				else log.warn("the AbstractFileItem with id {} has no content (check it!!)", file.getId());
 			}
-			accountingHandler.createFolderRemoveObj(item.getName(), item.getClass().getSimpleName(), mimetype, ses, ses.getNodeByIdentifier(item.getParentId()), true);
+			accountingHandler.createFolderRemoveObj(item.getName(), item.getClass().getSimpleName(), mimetype, ses, login, (Node) item.getRelatedNode(), true);
 		}catch(Throwable t) {
 			log.error("error exceuting move to trash",t);			
 			throw new BackendGenericError(t);
@@ -172,27 +248,69 @@ public class TrashHandler {
 
 	}
 
-	public String restoreItem(Session ses, TrashItem item) throws RepositoryException, BackendGenericError, UserNotAuthorizedException{
+	public String restoreItem(Session ses, TrashItem item, FolderItem destination, String login) throws RepositoryException, StorageHubException, BackendGenericError{
-		log.debug("restoring node from trash");
+		log.debug("restoring node from trash with user ");
-		final String login = AuthorizationProvider.instance.get().getClient().getId();
 		//final Node trashFolder = ses.getNode(Paths.append(Utils.getHomePath(),Constants.TRASH_ROOT_FOLDER_NAME).toPath());
-		Node originalParent = ses.getNodeByIdentifier(item.getOriginalParentId());
-		authChecker.checkWriteAuthorizationControl(ses, originalParent.getIdentifier(), false );		
 
-		ses.getWorkspace().getLockManager().lock(originalParent.getPath(), true, true, 0,login);
+		Node destinationNode= null;
+		if (destination==null) {
+			boolean originalParentExists = true;
+			boolean originalParentTrashed = false;
+			Node originalParent = null;
+			try {
+				originalParent = ses.getNodeByIdentifier(item.getOriginalParentId());
+			}catch (ItemNotFoundException e) {
+				originalParentExists = false;
+			}
+
+			Item originalParentItem = null;
+			if (originalParentExists) {
+				originalParentItem = node2Item.getItem(originalParent, Excludes.ALL);
+				originalParentTrashed = originalParentItem.isTrashed();
+			}
+
+
+			if(originalParentExists && !originalParentTrashed) {
+				destinationNode = originalParent;
+			}else {
+				String homeWS = pathUtil.getWorkspacePath(login).toPath();
+				Node node = ses.getNode(homeWS);
+				destinationNode = node;
+			}
+		} else {
+			Node node = (Node)destination.getRelatedNode();
+
+			if (!node2Item.checkNodeType(node, FolderItem.class))
+				throw new InvalidCallParameters("destination Node is not a folder");
+
+			destinationNode = node;
+		}
+
+		authChecker.checkWriteAuthorizationControl(ses, login, destinationNode.getIdentifier(), true );
+
+		ses.getWorkspace().getLockManager().lock(destinationNode.getPath(), true, true, 0,login);
+		String newNodePath = null;
+		try { 
+			//the real node is a child of the Trash node
 			List<Item> items = Utils.getItemList(ses.getNodeByIdentifier(item.getId()), Excludes.ALL, null, false, null);
 			if (items.size()!=1) {
 				log.warn("a problem occurred restoring item from trash");
 				throw new BackendGenericError("An error occurred on trash item");
 			}
 			Item itemToMove = items.get(0);
-		String newNodePath = Paths.append(Paths.getPath(originalParent.getPath()), itemToMove.getName()).toPath();
+
+			item2Node.updateOwnerOnSubTree(ses.getNodeByIdentifier(itemToMove.getId()), login);
+			String uniqueName = Utils.checkExistanceAndGetUniqueName(ses, destinationNode, itemToMove.getName());	
+			newNodePath = Paths.append(Paths.getPath(destinationNode.getPath()),uniqueName).toPath();
 			ses.move(itemToMove.getPath(), newNodePath);
 			Utils.setPropertyOnChangeNode(ses.getNode(newNodePath), login, ItemAction.MOVED);
 			ses.removeItem(item.getPath());
 			ses.save();
+		}catch (Exception e) {
+			if (ses.getWorkspace().getLockManager().isLocked(destinationNode.getPath()))
+				ses.getWorkspace().getLockManager().unlock(destinationNode.getPath());
+		}
 		return ses.getNode(newNodePath).getIdentifier();			
-
 	}
 
 }

src/main/java/org/gcube/data/access/storagehub/handlers/UnshareHandler.java

@@ -5,9 +5,10 @@ import java.util.HashSet;
 import java.util.List;
 import java.util.Set;
 
-import javax.inject.Inject;
+import jakarta.inject.Inject;
-import javax.inject.Singleton;
+import jakarta.inject.Singleton;
 import javax.jcr.Node;
+import javax.jcr.NodeIterator;
 import javax.jcr.RepositoryException;
 import javax.jcr.Session;
 import javax.jcr.lock.LockException;
@@ -27,9 +28,13 @@ import org.gcube.common.storagehub.model.items.FolderItem;
 import org.gcube.common.storagehub.model.items.Item;
 import org.gcube.common.storagehub.model.items.SharedFolder;
 import org.gcube.common.storagehub.model.types.ItemAction;
+import org.gcube.common.storagehub.model.types.NodeProperty;
 import org.gcube.data.access.storagehub.AuthorizationChecker;
+import org.gcube.data.access.storagehub.PathUtil;
 import org.gcube.data.access.storagehub.Utils;
 import org.gcube.data.access.storagehub.accounting.AccountingHandler;
+import org.gcube.data.access.storagehub.handlers.items.Item2NodeConverter;
+import org.gcube.data.access.storagehub.handlers.items.Node2ItemConverter;
 import org.slf4j.Logger;
 import org.slf4j.LoggerFactory;
 
@@ -48,25 +53,38 @@ public class UnshareHandler {
 	@Inject
 	AuthorizationChecker authChecker;
 	
+	@Inject
+	PathUtil pathUtil;
+
 	@Inject
 	Item2NodeConverter item2Node;
 
 	public String unshare(Session ses, Set<String> users, Node sharedNode, String login) throws RepositoryException, StorageHubException{
+		return _unshare(ses, users, sharedNode, login, true);	
+	}
+
+	public String unshareForRemoval(Session ses, Set<String> users, Node sharedNode, String login) throws RepositoryException, StorageHubException{
+		return _unshare(ses, users, sharedNode, login, false);
+	}
+
+	private String _unshare(Session ses, Set<String> users, Node sharedNode, String login, boolean withCopyOnUnshare) throws RepositoryException, StorageHubException{
 		Item item = node2Item.getItem(sharedNode, Excludes.ALL);
-		if (!(item instanceof FolderItem) || !((FolderItem) item).isShared() || ((SharedFolder) item).isVreFolder())
+		if (!(item instanceof FolderItem) || !((FolderItem) item).isShared() || ((SharedFolder) item).isVreFolder()) {
+			log.warn("this item type cannot be unshared {}",item.getClass().getSimpleName());
 			return null;
+		}
 		SharedFolder sharedItem =(SharedFolder) item;
 
 		Set<String> usersInSharedFolder = new HashSet<>(sharedItem.getUsers().getMap().keySet());
 		usersInSharedFolder.removeAll(users);
 
 		if (users==null || users.size()==0)
-			return unshareAll(login, ses, sharedItem);
+			return unshareAll(login, ses, sharedItem, withCopyOnUnshare);
 
 		if (usersInSharedFolder.size()<=1) {
 			if (users.size()==1 && users.contains(login))
-				return unshareAll(sharedItem.getOwner(), ses , sharedItem);
+				return unshareAll(sharedItem.getOwner(), ses , sharedItem, withCopyOnUnshare);
-			else return unshareAll(login, ses, sharedItem);
+			else return unshareAll(login, ses, sharedItem, withCopyOnUnshare);
 		}
 
 		try {	
@@ -85,7 +103,8 @@ public class UnshareHandler {
 
 	}
 
-	private String unshareAll(String login, Session ses, SharedFolder item) throws StorageHubException, BackendGenericError, RepositoryException{
+
+	private String unshareAll(String login, Session ses, SharedFolder item, boolean withCopyCreation) throws StorageHubException, BackendGenericError, RepositoryException{
 		log.info("unshare all called");
 
 		if (!login.equals(item.getOwner()))
@@ -99,21 +118,31 @@ public class UnshareHandler {
 			throw new ItemLockedException(e);
 		}
 
-		Node unsharedNode;
+		String unsharedNodeIdentifier =null;
 		try {
 			log.debug("user list is empty, I'm going to remove also the shared dir");
-			//take the admin folder and remove his clone then move the shared folder from share to the user home and change the folder type
-			String adminDirPath = (String)item.getUsers().getMap().get(login);
-			String[] splitString = adminDirPath.split("/");
-			String parentDirectoryId = splitString[0];
-			String directoryName = splitString[1];
-			Node parentNode = ses.getNodeByIdentifier(parentDirectoryId);
-			log.debug("parent node path is {}/{}",parentNode.getPath(), directoryName);
 
-			Node adminNode = ses.getNode(String.format("%s/%s",parentNode.getPath(), directoryName));
+			if (withCopyCreation) {
-			adminNode.removeShare();
 
-			unsharedNode = createUnsharedFolder(ses, parentNode, directoryName, item.getDescription(), login);
+				Node sharedOwnerNode = null;
+				NodeIterator it = sharedItemNode.getSharedSet();
+				while(it.hasNext()) {
+					Node node = it.nextNode();
+
+					log.info("[UNSHARE] checking node {} starts with {} ",node.getPath(),pathUtil.getHome(login).toPath());
+
+					if (node.getPath().startsWith(pathUtil.getHome(login).toPath())) {
+						sharedOwnerNode =node;
+						break;
+					}
+				}
+
+
+				Node shareParent = sharedOwnerNode.getParent();
+
+				sharedOwnerNode.removeShare();
+
+				Node unsharedNode = createUnsharedFolder(ses, shareParent , item.getTitle() , item.getDescription(), login);
 
 				List<Item> itemsToCopy = Utils.getItemList(sharedItemNode, Excludes.ALL, null, true, null);
 
@@ -122,14 +151,33 @@ public class UnshareHandler {
 					log.debug("copying {} to {}", itemToCopyNode.getPath(), unsharedNode.getPath());
 					ses.move(itemToCopyNode.getPath(), String.format("%s/%s",unsharedNode.getPath(), itemToCopyNode.getName()));
 				}
+
+				unsharedNode.getNode(NodeProperty.ACCOUNTING.toString()).remove();
+				ses.move(sharedItemNode.getNode(NodeProperty.ACCOUNTING.toString()).getPath(), String.format("%s/%s",unsharedNode.getPath(), NodeProperty.ACCOUNTING.toString()));
+
+				//set owner of all the unshared items to the caller
+				item2Node.updateOwnerOnSubTree(unsharedNode, login);
+
+				accountingHandler.createUnshareFolder(sharedItemNode.getProperty(NodeProperty.TITLE.toString()).getString(), ses, "ALL", unsharedNode, false);
+
+				unsharedNodeIdentifier = unsharedNode.getIdentifier();
+				log.info("[UNSHARE] unshared node id {}",unsharedNodeIdentifier);
 				ses.save();
+			} //TODO: else shoud I removove all the fiel content ? 
+			
+			log.debug("all the users have been removed, the folder is totally unshared");
+
+		}catch(Throwable t) {
+			log.error("erro unsharing all",t);
+			throw t;
 		}finally {
 			ses.getWorkspace().getLockManager().unlock(sharedItemNode.getPath());
 		}
+		
 		sharedItemNode.removeSharedSet();
 		ses.save();
-		log.debug("all the users have been removed, the folder is totally unshared");
+		
-		return unsharedNode.getIdentifier();
+		return unsharedNodeIdentifier;
 
 	}
 
@@ -137,16 +185,29 @@ public class UnshareHandler {
 
 
 	private String unshareCaller(String login, Session ses, SharedFolder item) throws StorageHubException, RepositoryException{
-
+		log.info("unshare caller");
 		if (login.equals(item.getOwner())) 
 			throw new InvalidCallParameters("the caller is the owner, the folder cannot be unshared");
 
-		if (item.getUsers().getMap().get(login)==null)
-			throw new InvalidCallParameters("the folder is not shared with user "+login);
-
 		Node sharedFolderNode =ses.getNodeByIdentifier(item.getId());
+		if (item.getUsers().getMap().get(login)!=null) {
+			Node usersNode = sharedFolderNode.getNode(NodeConstants.USERS_NAME);
+			usersNode.remove();
+			Node newUsersNode = sharedFolderNode.addNode(NodeConstants.USERS_NAME);
 
-		String parentId = removeSharingForUser(login, ses, item);
+			item.getUsers().getMap().entrySet().stream().filter(entry -> !entry.getKey().equals(login)).forEach(entry-> {try {
+				newUsersNode.setProperty(entry.getKey(), (String)entry.getValue());
+			} catch (Exception e) {
+				log.error("error adding property to shared node users node under {}",item.getId());
+			}});
+		} 
+
+		Node shareNode = getUserSharingNode(login, ses, item);
+		String parentId = shareNode.getParent().getIdentifier();
+
+		//not returning an error to correct all the old ACL
+		if (shareNode != null)
+			shareNode.removeShare();
 		
 		AccessControlManager acm = ses.getAccessControlManager();
 		JackrabbitAccessControlList acls = AccessControlUtils.getAccessControlList(acm, sharedFolderNode.getPath());
@@ -162,20 +223,12 @@ public class UnshareHandler {
 		if (entryToDelete!=null)
 			acls.removeAccessControlEntry(entryToDelete);
 
-		log.debug("removed Access control entry for user {}",login);
-		Node sharedItemNode = ses.getNodeByIdentifier(item.getId());
-		Node usersNode = sharedItemNode.getNode(NodeConstants.USERS_NAME);
-		usersNode.remove();
-		Node newUsersNode = sharedItemNode.addNode(NodeConstants.USERS_NAME);
-
-		item.getUsers().getMap().entrySet().stream().filter(entry -> !entry.getKey().equals(login)).forEach(entry-> {try {
-			newUsersNode.setProperty(entry.getKey(), (String)entry.getValue());
-		} catch (Exception e) {
-			log.error("error adding property to shared node users node under {}",item.getId());
-		}});
-
 		acm.setPolicy(sharedFolderNode.getPath(), acls);
 
+		log.debug("removed Access control entry for user {}",login);
+		
+		accountingHandler.createUnshareFolder(item.getTitle(), ses, login, sharedFolderNode, false);
+
 		ses.save();
 
 		return parentId;
@@ -183,10 +236,9 @@ public class UnshareHandler {
 	}
 
 	
-
-
 	private String unsharePartial(Set<String> usersToUnshare, String login, Session ses, SharedFolder item) throws StorageHubException, RepositoryException {
-		authChecker.checkAdministratorControl(ses, (SharedFolder)item);
+		log.info("unshare partial");
+		authChecker.checkAdministratorControl(ses, login, (SharedFolder)item);
 		if (usersToUnshare.contains(item.getOwner()))
 			throw new UserNotAuthorizedException("user "+login+" not authorized to unshare owner");
 
@@ -196,7 +248,11 @@ public class UnshareHandler {
 		JackrabbitAccessControlList acls = AccessControlUtils.getAccessControlList(acm, sharedFolderNode.getPath());
 
 		for (String user : usersToUnshare) {
-			removeSharingForUser(user, ses, item);
+			Node userShareNode = getUserSharingNode(user, ses, item);
+
+			//not returning an error to correct all the old ACL
+			if (userShareNode != null)
+				userShareNode.removeShare();
 
 			AccessControlEntry entryToDelete= null;
 			for (AccessControlEntry ace :acls.getAccessControlEntries()) {
@@ -226,6 +282,10 @@ public class UnshareHandler {
 
 		acm.setPolicy(sharedFolderNode.getPath(), acls);
 
+		for (String user: usersToUnshare) {
+			accountingHandler.createUnshareFolder(sharedItemNode.getProperty(NodeProperty.TITLE.toString()).getString(), ses,  user, sharedItemNode, false);
+		}
+
 		ses.save();
 
 		return item.getId();
@@ -233,18 +293,34 @@ public class UnshareHandler {
 	}
 
 
-	private String removeSharingForUser(String user, Session ses, SharedFolder item) throws RepositoryException {
+	private Node getUserSharingNode(String user, Session ses, SharedFolder item) throws RepositoryException {
+		Node shareNode = null;
+		try {
 			String userDirPath = (String)item.getUsers().getMap().get(user);
 			if (userDirPath==null) return null;
 			String[] splitString = userDirPath.split("/");
 			String parentDirectoryId = splitString[0];
 			String directoryName = splitString[1];
-		Node parentNode = ses.getNodeByIdentifier(parentDirectoryId);
+			Node parentNode = null;
-		Node userNode = ses.getNode(String.format("%s/%s",parentNode.getPath(), directoryName));
+			parentNode = ses.getNodeByIdentifier(parentDirectoryId);
-		userNode.removeShare();
+			shareNode = ses.getNode(String.format("%s/%s",parentNode.getPath(), directoryName));
-		accountingHandler.createUnshareFolder(directoryName, ses, parentNode, false);
+		}catch (Throwable e) {
-		log.debug("directory removed for user {}",user);
+			log.warn("users map is not containing a valid value");
-		return parentDirectoryId;
+		}
+
+		Node sharedFolderNode = ses.getNodeByIdentifier(item.getId());
+		if (shareNode==null) {
+			NodeIterator it = sharedFolderNode.getSharedSet();
+			while(it.hasNext()) {
+				Node node = it.nextNode();
+				if (node.getPath().startsWith(pathUtil.getHome(user).toPath())) {
+					shareNode =node;
+					break;
+				}
+			}
+		}
+
+		return shareNode;
 	}
 
 

src/main/java/org/gcube/data/access/storagehub/handlers/VREManager.java

@@ -1,59 +0,0 @@
-package org.gcube.data.access.storagehub.handlers;
-
-import java.util.HashMap;
-import java.util.Map;
-import java.util.concurrent.ExecutorService;
-import java.util.concurrent.Executors;
-
-import javax.inject.Inject;
-import javax.inject.Singleton;
-import javax.jcr.SimpleCredentials;
-import javax.servlet.ServletContext;
-
-import org.gcube.common.storagehub.model.items.Item;
-import org.gcube.data.access.storagehub.Constants;
-import org.gcube.data.access.storagehub.services.RepositoryInitializer;
-import org.slf4j.Logger;
-import org.slf4j.LoggerFactory;
-
-@Singleton
-public class VREManager {
-
-	private static final Logger logger = LoggerFactory.getLogger(VREManager.class);
-	
-	private Map<String, VRE> vreMap = new HashMap<>();
-	
-	@Inject 
-	RepositoryInitializer repository;
-	
-	ExecutorService executor = Executors.newFixedThreadPool(5);
-	
-	SimpleCredentials credentials;
-	
-	@Inject
-	public VREManager(ServletContext context) {
-		credentials = new SimpleCredentials(context.getInitParameter(Constants.ADMIN_PARAM_NAME),context.getInitParameter(Constants.ADMIN_PARAM_PWD).toCharArray());
-	}
-	
-	
-	public synchronized VRE getVRE(String completeName) {
-		logger.trace("requesting VRE {}",completeName);
-		if (vreMap.containsKey(completeName))
-			return vreMap.get(completeName);
-		else 
-			return null;
-		
-	}
-	
-	public synchronized VRE putVRE(Item vreFolder) {
-		logger.trace("inserting VRE {}",vreFolder.getTitle());
-		if (vreMap.containsKey(vreFolder.getTitle())) throw new RuntimeException("something went wrong (vre already present in the map)");
-		else {
-			VRE toReturn = new VRE(vreFolder, repository.getRepository(), credentials, executor);
-			vreMap.put(vreFolder.getTitle(), toReturn);
-			return toReturn;
-		}
-		
-	}
-	
-}

src/main/java/org/gcube/data/access/storagehub/handlers/VREQueryRetriever.java

@@ -1,192 +0,0 @@
-package org.gcube.data.access.storagehub.handlers;
-
-import java.util.ArrayList;
-import java.util.Arrays;
-import java.util.Iterator;
-import java.util.List;
-import java.util.concurrent.Callable;
-
-import javax.jcr.Credentials;
-import javax.jcr.Node;
-import javax.jcr.NodeIterator;
-import javax.jcr.Property;
-import javax.jcr.Repository;
-import javax.jcr.RepositoryException;
-import javax.jcr.Session;
-import javax.jcr.observation.Event;
-import javax.jcr.observation.EventJournal;
-import javax.jcr.query.Query;
-
-import org.gcube.common.storagehub.model.Excludes;
-import org.gcube.common.storagehub.model.NodeConstants;
-import org.gcube.common.storagehub.model.items.Item;
-import org.gcube.data.access.storagehub.Constants;
-import org.slf4j.Logger;
-import org.slf4j.LoggerFactory;
-
-public class VREQueryRetriever implements Callable<List<Item>> {
-
-	private static final Logger logger = LoggerFactory.getLogger(VREQueryRetriever.class); 
-
-	private static final int CACHE_DIMENSION = 50;
-		
-	private Repository repository;
-	private Credentials credentials;
-	private Item vreFolder;
-	List<Item> cachedList = new ArrayList<>(CACHE_DIMENSION);
-	long lastTimestamp =0;
-
-	private Node2ItemConverter node2Item = new Node2ItemConverter();
-	
-
-	public VREQueryRetriever(Repository repository, Credentials credentials, Item vreFolder) {
-		super();
-		this.repository = repository;
-		this.credentials = credentials;
-		this.vreFolder = vreFolder;
-	}
-
-	public List<Item> call() {
-		logger.trace("executing recents task");
-		Session ses = null;
-		if (lastTimestamp==0) {
-			try {
-				long start = System.currentTimeMillis();
-				ses = repository.login(credentials);
-				String query = String.format("SELECT * FROM [nthl:workspaceLeafItem] AS node WHERE ISDESCENDANTNODE('%s') ORDER BY node.[jcr:lastModified] DESC ",vreFolder.getPath());
-				logger.trace("query for recents is {}",query);
-				Query jcrQuery = ses.getWorkspace().getQueryManager().createQuery(query, Constants.QUERY_LANGUAGE);
-				jcrQuery.setLimit(CACHE_DIMENSION);
-				lastTimestamp = System.currentTimeMillis();
-				NodeIterator it =  jcrQuery.execute().getNodes();
-				logger.trace("query for recents took {}",System.currentTimeMillis()-start);
-				while (it.hasNext()) {
-					Node node = it.nextNode();
-					Item item =node2Item.getItem(node, Excludes.EXCLUDE_ACCOUNTING);
-					cachedList.add(item);
-					logger.trace("adding item {} with node {}",item.getTitle(), node.getName());
-				}
-				logger.trace("creating objects took {}",System.currentTimeMillis()-start);
-				if (cachedList.size()<=10) return cachedList;
-				else return cachedList.subList(0, 10);
-			} catch (Exception e) {
-				logger.error("error querying vre {}",vreFolder.getTitle(),e);
-				throw new RuntimeException(e);
-			}finally{
-				if (ses!=null)
-					ses.logout();
-				logger.trace("recents task finished");
-			}
-		} else {
-			try {
-				
-				long timestampToUse = lastTimestamp;
-				lastTimestamp = System.currentTimeMillis();
-
-				long start = System.currentTimeMillis();
-				ses = repository.login(credentials);
-				final String[] types = { "nthl:workspaceLeafItem", "nthl:workspaceItem"};
-
-				EventJournal journalChanged = ses.getWorkspace().getObservationManager().getEventJournal(Event.PROPERTY_CHANGED^Event.NODE_REMOVED^Event.NODE_MOVED^Event.NODE_ADDED, vreFolder.getPath(), true, null, types);
-				journalChanged.skipTo(timestampToUse);
-				
-				logger.trace("getting the journal took {}",System.currentTimeMillis()-start);
-				
-				int events = 0;
-				
-				while (journalChanged.hasNext()) {
-					events++;
-					Event event = journalChanged.nextEvent();
-					switch(event.getType()) {
-					
-					case Event.NODE_ADDED:
-						if (ses.nodeExists(event.getPath())) {
-							Node nodeAdded = ses.getNode(event.getPath());
-							if (nodeAdded.isNodeType("nthl:workspaceLeafItem")) {
-								logger.trace("node added event received with name {}", nodeAdded.getName());
-								Item item = node2Item.getItem(nodeAdded, Arrays.asList(NodeConstants.ACCOUNTING_NAME));
-								insertItemInTheRightPlace(item);
-							}
-						}
-						break;
-					
-					case Event.PROPERTY_CHANGED:
-						if (ses.propertyExists(event.getPath())) {
-							Property property = ses.getProperty(event.getPath());
-							if (property.getName().equalsIgnoreCase("jcr:lastModified")) {
-								logger.trace("event property changed on {} with value {} and parent {}",property.getName(), property.getValue().getString(), property.getParent().getPath());
-								String identifier = property.getParent().getIdentifier();
-								cachedList.removeIf(i -> i.getId().equals(identifier));
-								Item item = node2Item.getItem(property.getParent(), Excludes.EXCLUDE_ACCOUNTING);
-								insertItemInTheRightPlace(item);
-							}
-						}
-						break;
-					case Event.NODE_REMOVED:
-						logger.trace("node removed event received with type {}", event.getIdentifier());
-						cachedList.removeIf(i -> {
-							try {
-								return i.getId().equals(event.getIdentifier()) && i.getLastModificationTime().getTime().getTime()<event.getDate();
-							} catch (RepositoryException e) {
-								return false;
-							}
-						});
-
-						break;
-					case Event.NODE_MOVED:
-						Node nodeMoved = ses.getNode(event.getPath());
-						logger.trace("node moved event received with type {}", nodeMoved.getPrimaryNodeType());
-						if (nodeMoved.isNodeType("nthl:workspaceLeafItem")) {
-							logger.trace("event node moved on {} with path {}",nodeMoved.getName(), nodeMoved.getPath());
-							String identifier = nodeMoved.getIdentifier();
-							cachedList.removeIf(i -> i.getId().equals(identifier) && !i.getPath().startsWith(vreFolder.getPath()));
-						}
-						break;
-					default:
-						throw new Exception("error in event handling");	
-					}
-
-				}
-
-				if (cachedList.size()>CACHE_DIMENSION)
-					cachedList.subList(51, cachedList.size()).clear();
-				logger.trace("retrieving event took {} with {} events",System.currentTimeMillis()-start, events);
-				if (cachedList.size()<=10) return cachedList;
-				else return cachedList.subList(0, 10);
-			} catch (Exception e) {
-				logger.error("error getting events for vre {}",vreFolder.getTitle(),e);
-				throw new RuntimeException(e);
-			}finally{
-				if (ses!=null)
-					ses.logout();
-			}
-		}
-
-	}
-
-	private void insertItemInTheRightPlace(Item item) {
-		Iterator<Item> it = cachedList.iterator();
-		int index =0;
-		while (it.hasNext()) {
-			Item inListItem = it.next();
-			if (item.getLastModificationTime().getTime().getTime()>=inListItem.getLastModificationTime().getTime().getTime()) break;
-			index++;
-		}
-		if (index<CACHE_DIMENSION) 
-			cachedList.add(index, item);
-	}
-
-	/*	@Override
-	public void onEvent(EventIterator events) {
-		logger.trace("on event called");
-		while (events.hasNext()) {
-			Event event = events.nextEvent();
-			try {
-				logger.trace("new event received of type {} on node {}",event.getType(),event.getIdentifier());
-			} catch (RepositoryException e) {
-				logger.error("error reading event",e);
-			}
-		}
-	}*/
-
-}

src/main/java/org/gcube/data/access/storagehub/handlers/VersionHandler.java

@@ -4,8 +4,9 @@ import java.util.ArrayList;
 import java.util.Collections;
 import java.util.List;
 
-import javax.inject.Singleton;
+import jakarta.inject.Singleton;
 import javax.jcr.Node;
+import javax.jcr.RepositoryException;
 import javax.jcr.Session;
 import javax.jcr.version.Version;
 import javax.jcr.version.VersionHistory;
@@ -22,7 +23,7 @@ public class VersionHandler {
 
 	private static final Logger logger = LoggerFactory.getLogger(VersionHandler.class);
 
-	public void makeVersionableContent(Node node, Session session){
+	public void makeVersionableContent(Node node){
 		try {
 			Node contentNode = node.getNode(NodeConstants.CONTENT_NAME);
 			contentNode.addMixin(JcrConstants.MIX_VERSIONABLE);
@@ -31,8 +32,9 @@ public class VersionHandler {
 		}
 	}
 
-	public void checkinContentNode(Node node, Session session){
+	public void checkinContentNode(Node node){
 		try {
+			Session session = node.getSession();
 			Node contentNode = node.getNode(NodeConstants.CONTENT_NAME);
 			VersionManager versionManager = session.getWorkspace().getVersionManager();
 			versionManager.checkin(contentNode.getPath());
@@ -41,8 +43,9 @@ public class VersionHandler {
 		}
 	}
 
-	public void checkoutContentNode(Node node, Session session){
+	public void checkoutContentNode(Node node){
 		try {
+			Session session = node.getSession();
 			Node contentNode = node.getNode(NodeConstants.CONTENT_NAME);
 			VersionManager versionManager = session.getWorkspace().getVersionManager();
 			versionManager.checkout(contentNode.getPath());
@@ -51,8 +54,16 @@ public class VersionHandler {
 		}
 	}
 
-	public List<Version> getContentVersionHistory(Node node, Session session) {
+	public Version getCurrentVersion(Node node) throws RepositoryException{
+		Session session = node.getSession();
+		Node contentNode = node.getNode(NodeConstants.CONTENT_NAME);
+		VersionManager versionManager = session.getWorkspace().getVersionManager();
+		return versionManager.getBaseVersion(contentNode.getPath());
+	}
+
+	public List<Version> getContentVersionHistory(Node node) {
 		try {
+			Session session = node.getSession();
 			Node contentNode = node.getNode(NodeConstants.CONTENT_NAME);
 			VersionManager versionManager = session.getWorkspace().getVersionManager();
 			VersionHistory history = versionManager.getVersionHistory(contentNode.getPath());
@@ -65,10 +76,17 @@ public class VersionHandler {
 				logger.debug("version name {} with nodeType {}",version.getName(),version.getPrimaryNodeType().getName());
 			}
 			return versions;
-		}catch(Exception e ) {
+		}catch(Throwable e ) {
 			logger.warn("cannot get version history content node",e);
 			return Collections.emptyList();
 		}
 	}
 
+	public void removeContentVersion(Node node, String versionName) throws RepositoryException{
+		Node contentNode = node.getNode(NodeConstants.CONTENT_NAME);
+		VersionHistory history = contentNode.getSession().getWorkspace().getVersionManager().getVersionHistory(contentNode.getPath());
+		history.removeVersion(versionName);
+
+	}
+
 }

src/main/java/org/gcube/data/access/storagehub/handlers/content/ContentHandler.java

@@ -7,7 +7,15 @@ import org.gcube.common.storagehub.model.items.nodes.Content;
 
 public interface ContentHandler {
 	
-	void initiliseSpecificContent(InputStream is, String fileName, String mimeType) throws Exception;
+	boolean requiresInputStream();
+	
+	default void initiliseSpecificContent(InputStream is, String fileName, String mimeType, long size) throws Exception{
+		throw new UnsupportedOperationException();
+	}
+	
+	default void initiliseSpecificContent(String fileName, String mimeType) throws Exception {
+		throw new UnsupportedOperationException();
+	}
 	
 	Content getContent();
 			

src/main/java/org/gcube/data/access/storagehub/handlers/content/ContentHandlerFactory.java

@@ -3,7 +3,8 @@ package org.gcube.data.access.storagehub.handlers.content;
 import java.util.Arrays;
 import java.util.HashMap;
 import java.util.Set;
-import javax.inject.Singleton;
+
+import jakarta.inject.Singleton;
 
 import org.gcube.common.storagehub.model.annotations.MimeTypeHandler;
 import org.reflections.Reflections;
@@ -41,9 +42,9 @@ public class ContentHandlerFactory {
 	public ContentHandler create(String mimetype) throws Exception{
 		Class<? extends ContentHandler> handlerClass = handlerMap.get(mimetype);
 		if (handlerClass!=null) 
-			return handlerClass.newInstance();
+			return handlerClass.getDeclaredConstructor().newInstance();
 		else 
-			return defaultHandler.newInstance();
+			return defaultHandler.getDeclaredConstructor().newInstance();
 	}
 	
 }

src/main/java/org/gcube/data/access/storagehub/handlers/content/GenericFileHandler.java

@@ -1,6 +1,5 @@
 package org.gcube.data.access.storagehub.handlers.content;
 
-import java.io.InputStream;
 import java.util.Calendar;
 
 import org.gcube.common.storagehub.model.items.GenericFileItem;
@@ -11,12 +10,17 @@ public class GenericFileHandler implements ContentHandler{
 
 	Content content = new Content();
 
+	@Override
+	public boolean requiresInputStream() {
+		return false;
+	}	
 	
 	@Override
-	public void initiliseSpecificContent(InputStream is, String filename, String mimeType) throws Exception {
+	public void initiliseSpecificContent(String filename, String mimeType) throws Exception {
 		content.setMimeType(mimeType);
 	}
 
+	
 	@Override
 	public Content getContent() {
 		return content;

src/main/java/org/gcube/data/access/storagehub/handlers/content/ImageHandler.java

@@ -28,8 +28,15 @@ public class ImageHandler implements ContentHandler{
 
 	private static final Logger logger = LoggerFactory.getLogger(ImageHandler.class);
 
+
 	@Override
-	public void initiliseSpecificContent(InputStream is, String fileName, String mimeType) throws Exception {
+	public boolean requiresInputStream() {
+		return true;
+	}	
+
+	@Override
+	public void initiliseSpecificContent(InputStream is, String fileName, String mimeType, long size) throws Exception {
+		if (size<5242880)  {
 			Image image = javax.imageio.ImageIO.read(is);
 
 			int width = image.getWidth(null);
@@ -38,6 +45,7 @@ public class ImageHandler implements ContentHandler{
 			content.setWidth(Long.valueOf(width));
 			content.setHeight(Long.valueOf(height));
 
+
 			try {
 				int[] dimension = getThumbnailDimension(width, height);
 
@@ -50,6 +58,8 @@ public class ImageHandler implements ContentHandler{
 			}catch(Throwable t) {
 				logger.warn("thumbnail for file {} cannot be created ", fileName,t);
 			}
+		}
+		
 		content.setMimeType(mimeType);
 
 	}

src/main/java/org/gcube/data/access/storagehub/handlers/content/OfficeAppHandler.java

@@ -7,7 +7,6 @@ import org.apache.tika.metadata.Metadata;
 import org.apache.tika.parser.ParseContext;
 import org.apache.tika.parser.microsoft.ooxml.OOXMLParser;
 import org.apache.tika.sax.BodyContentHandler;
-import org.gcube.common.storagehub.model.annotations.MimeTypeHandler;
 import org.gcube.common.storagehub.model.items.GenericFileItem;
 import org.gcube.common.storagehub.model.items.nodes.Content;
 import org.gcube.common.storagehub.model.types.ItemAction;
@@ -18,7 +17,12 @@ public class OfficeAppHandler implements ContentHandler{
 	Content content = new Content();
 
 	@Override
-	public void initiliseSpecificContent(InputStream is, String filename, String mimeType) throws Exception {
+	public boolean requiresInputStream() {
+		return true;
+	}	
+	
+	@Override
+	public void initiliseSpecificContent(InputStream is, String filename, String mimeType, long size) throws Exception {
 		//detecting the file type
 		BodyContentHandler handler = new BodyContentHandler();
 		Metadata metadata = new Metadata();

src/main/java/org/gcube/data/access/storagehub/handlers/content/PdfHandler.java

@@ -8,6 +8,8 @@ import org.gcube.common.storagehub.model.annotations.MimeTypeHandler;
 import org.gcube.common.storagehub.model.items.PDFFileItem;
 import org.gcube.common.storagehub.model.items.nodes.PDFContent;
 import org.gcube.common.storagehub.model.types.ItemAction;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
 
 import com.itextpdf.text.pdf.PdfReader;
 
@@ -22,9 +24,16 @@ public class PdfHandler implements ContentHandler {
 	
 	PDFContent content = new PDFContent();
 	
+	private static final Logger logger = LoggerFactory.getLogger(PdfHandler.class);
 
 	@Override
-	public void initiliseSpecificContent(InputStream is, String fileName, String mimeType) throws Exception {
+	public boolean requiresInputStream() {
+		return true;
+	}	
+	
+	@Override
+	public void initiliseSpecificContent(InputStream is, String fileName, String mimeType, long size) throws Exception {
+		try {
 			PdfReader reader = new PdfReader(is);
 			content.setNumberOfPages(Long.valueOf(reader.getNumberOfPages()));
 			content.setVersion(String.valueOf(reader.getPdfVersion()));
@@ -32,10 +41,11 @@ public class PdfHandler implements ContentHandler {
 			content.setAuthor(fileInfo.containsKey(AUTHOR)?fileInfo.get(AUTHOR):"n/a");
 			content.setProducer(fileInfo.containsKey(PRODUCER)?fileInfo.get(PRODUCER):"n/a");
 			content.setTitle(fileInfo.containsKey(TITLE)?fileInfo.get(TITLE):"n/a");
-		content.setMimeType(mimeType);
+		} catch (Exception e) {
+			logger.warn("{} is not a valid pdf", fileName, e);	
 		}
-
+		content.setMimeType(mimeType);
-	@Override
+	}	@Override
 	public PDFContent getContent() {
 		return content;
 	}

src/main/java/org/gcube/data/access/storagehub/handlers/items/Item2NodeConverter.java

@@ -1,4 +1,4 @@
-package org.gcube.data.access.storagehub.handlers;
+package org.gcube.data.access.storagehub.handlers.items;
 
 import java.lang.reflect.Field;
 import java.net.URL;
@@ -10,13 +10,14 @@ import java.util.Map;
 import java.util.Map.Entry;
 import java.util.Set;
 
-import javax.inject.Singleton;
+import jakarta.inject.Singleton;
 import javax.jcr.ItemExistsException;
 import javax.jcr.Node;
 import javax.jcr.PathNotFoundException;
 import javax.jcr.RepositoryException;
 import javax.jcr.Value;
 
+import org.apache.jackrabbit.core.NodeImpl;
 import org.apache.jackrabbit.util.Text;
 import org.apache.jackrabbit.value.BinaryValue;
 import org.apache.jackrabbit.value.BooleanValue;
@@ -31,11 +32,16 @@ import org.gcube.common.storagehub.model.annotations.ListNodes;
 import org.gcube.common.storagehub.model.annotations.MapAttribute;
 import org.gcube.common.storagehub.model.annotations.NodeAttribute;
 import org.gcube.common.storagehub.model.annotations.RootNode;
+import org.gcube.common.storagehub.model.exceptions.BackendGenericError;
 import org.gcube.common.storagehub.model.items.AbstractFileItem;
+import org.gcube.common.storagehub.model.items.FolderItem;
 import org.gcube.common.storagehub.model.items.Item;
+import org.gcube.common.storagehub.model.items.RootItem;
 import org.gcube.common.storagehub.model.types.ItemAction;
 import org.gcube.common.storagehub.model.types.NodeProperty;
+import org.gcube.data.access.storagehub.NodeChildrenFilterIterator;
 import org.gcube.data.access.storagehub.Utils;
+import org.gcube.data.access.storagehub.handlers.ClassHandler;
 import org.slf4j.Logger;
 import org.slf4j.LoggerFactory;
 
@@ -44,11 +50,27 @@ public class Item2NodeConverter {
 
 	private static final Logger logger = LoggerFactory.getLogger(Item2NodeConverter.class);
 	
-	public <T extends Item> Node getNode(Node parentNode, T item){
+	public <T extends RootItem> Node getNode(Node parentNode, T item, String  uuid){
 		try {
 			String primaryType= ClassHandler.instance().getNodeType(item.getClass());
-			Node newNode = parentNode.addNode(Text.escapeIllegalJcrChars(item.getName()), primaryType);
+			Node newNode = null;
-			//newNode.setPrimaryType(primaryType);
+			if (uuid==null)
+				newNode = parentNode.addNode(Text.escapeIllegalJcrChars(item.getName()), primaryType);
+			else ((NodeImpl)parentNode).addNodeWithUuid(item.getName(), primaryType, uuid);
+			fillNode(newNode, item);
+			return newNode;
+		} catch (RepositoryException e) {
+			logger.error("error writing repository",e);
+			throw new RuntimeException(e);
+		}
+	}
+	
+	public <T extends RootItem> Node getNode(Node parentNode, T item){
+		return getNode(parentNode, item, null);
+
+	}
+	
+	private <T extends RootItem> void fillNode(Node newNode, T item) throws RepositoryException {
 		for (Field field : retrieveAllFields(item.getClass())){
 			if (field.isAnnotationPresent(Attribute.class)){
 				Attribute attribute = field.getAnnotation(Attribute.class);
@@ -56,7 +78,7 @@ public class Item2NodeConverter {
 				field.setAccessible(true);
 				try{
 					//Class<?> returnType = field.getType();
-						logger.debug("creating node - added field {}",field.getName());
+					logger.trace("creating node - added field {}",field.getName());
 					Values values = getObjectValue(field.getType(), field.get(item));
 					if (values.isMulti()) newNode.setProperty(attribute.value(), values.getValues());
 					else  newNode.setProperty(attribute.value(), values.getValue());
@@ -67,27 +89,21 @@ public class Item2NodeConverter {
 				NodeAttribute nodeAttribute = field.getAnnotation(NodeAttribute.class);
 				if (nodeAttribute.isReadOnly()) continue;
 				String nodeName = nodeAttribute.value();
-					logger.debug("retrieving field node "+field.getName());
+				logger.trace("retrieving field node "+field.getName());
 				field.setAccessible(true);
 				try{
 					Object obj = field.get(item);
 					if (obj!=null) 
 						iterateItemNodeAttributeFields(obj, newNode, nodeName);
 				} catch (Exception e ) {
-						logger.warn("error setting value",e);
+					logger.debug("error setting value",e);
-					}
-
-
-				}
-			}
-			return newNode;
-		} catch (RepositoryException e) {
-			logger.error("error writing repository",e);
-			throw new RuntimeException(e);
 				}
 
 			}
+		}
+	}
 
+	@SuppressWarnings("unchecked")
 	private void iterateItemNodeAttributeFields(Object object, Node parentNode, String nodeName) throws Exception{
 		
 		AttributeRootNode attributeRootNode = object.getClass().getAnnotation(AttributeRootNode.class);
@@ -110,10 +126,11 @@ public class Item2NodeConverter {
 					@SuppressWarnings("rawtypes")
 					Class returnType = field.getType();
 					Values values = getObjectValue(returnType, field.get(object));
+					if (values == null) continue; 
 					if (values.isMulti()) newNode.setProperty(attribute.value(), values.getValues());
 					else newNode.setProperty(attribute.value(), values.getValue());
 				} catch (Exception e ) {
-					logger.warn("error setting value",e);
+					logger.debug("error setting value",e);
 				}
 			} else if (field.isAnnotationPresent(MapAttribute.class)){
 				//logger.debug("found field {} of type annotated as MapAttribute in class {}", field.getName(), clazz.getName());
@@ -125,11 +142,11 @@ public class Item2NodeConverter {
 						if (values.isMulti()) newNode.setProperty(entry.getKey(), values.getValues());
 						else newNode.setProperty(entry.getKey(), values.getValue());
 					} catch (Exception e ) {
-						logger.warn("error setting value",e);
+						logger.debug("error setting value",e);
 					}
 
 			} else if (field.isAnnotationPresent(ListNodes.class)){
-				logger.debug("found field {} of type annotated as ListNodes in class {} on node {}", field.getName(), object.getClass().getName(), newNode.getName());
+				logger.trace("found field {} of type annotated as ListNodes in class {} on node {}", field.getName(), object.getClass().getName(), newNode.getName());
 				field.setAccessible(true);
 				List<Object> toSetList = (List<Object>) field.get(object);
 
@@ -140,13 +157,28 @@ public class Item2NodeConverter {
 
 					iterateItemNodeAttributeFields(obj,newNode, field.getName()+(i++));
 				}
+			} else if (field.isAnnotationPresent(NodeAttribute.class)){
+			
+				NodeAttribute nodeAttribute = field.getAnnotation(NodeAttribute.class);
+				if (nodeAttribute.isReadOnly()) continue;
+				String subNodeName = nodeAttribute.value();
+				logger.trace("retrieving field node "+field.getName());
+				field.setAccessible(true);
+				try{
+					Object obj = field.get(object);
+					if (obj!=null) 
+						iterateItemNodeAttributeFields(obj, newNode, subNodeName);
+				} catch (Exception e ) {
+					logger.debug("error setting value",e);
+				}
+
 			}
 		}
 	}
 	
 	@SuppressWarnings({ "rawtypes" })
-	private Values getObjectValue(Class returnType, Object value) throws Exception{
+	public static Values getObjectValue(Class returnType, Object value) throws Exception{
-		
+		if (value== null) return null; 
 		if (returnType.equals(String.class))  return new Values(new StringValue((String) value));
 		if (returnType.isEnum())  return new Values(new StringValue(((Enum) value).toString()));
 		if (returnType.equals(Calendar.class))  return new Values(new DateValue((Calendar) value));
@@ -184,7 +216,8 @@ public class Item2NodeConverter {
 	public <F extends AbstractFileItem> void replaceContent(Node node, F item, ItemAction action){
 		try {
 			
-			node.setPrimaryType(item.getClass().getAnnotation(RootNode.class).value());			
+			String primaryType = item.getClass().getAnnotation(RootNode.class).value()[0];
+			node.setPrimaryType(primaryType);			
 			Node contentNode = node.getNode(NodeConstants.CONTENT_NAME);
 			contentNode.setPrimaryType(item.getContent().getClass().getAnnotation(AttributeRootNode.class).value());
 
@@ -192,22 +225,9 @@ public class Item2NodeConverter {
 			node.setProperty(NodeProperty.LAST_MODIFIED_BY.toString(), item.getLastModifiedBy());
 			node.setProperty(NodeProperty.LAST_ACTION.toString(), action.name());
 
-			for (Field field : retrieveAllFields(item.getContent().getClass())){
-				if (field.isAnnotationPresent(Attribute.class)){
-					Attribute attribute = field.getAnnotation(Attribute.class);
-					if (attribute.isReadOnly()) continue;
-					field.setAccessible(true);
-					try{
-						//Class<?> returnType = field.getType();
-						Values values = getObjectValue(field.getType(), field.get(item.getContent()));
-						if (values.isMulti()) contentNode.setProperty(attribute.value(), values.getValues() );
-						else contentNode.setProperty(attribute.value(), values.getValue());
 			
-					} catch (Exception e ) {
+			replaceContentNodeInternal(contentNode, item.getContent().getClass(),item.getContent());
-						logger.warn("error setting value for attribute "+attribute.value(),e);
+			
-					}
-				}			
-			}
 
 		} catch (RepositoryException e) {
 			logger.error("error writing repository",e);
@@ -216,11 +236,76 @@ public class Item2NodeConverter {
 
 	}
 	
+	//VALID ONLY FOR CONTENT
+	public void replaceContentNodeInternal(Node node, Class<?> clazz, Object instance) {
+		for (Field field : retrieveAllFields(clazz)){
+			if (field.isAnnotationPresent(Attribute.class)){
+				Attribute attribute = field.getAnnotation(Attribute.class);
+				if (attribute.isReadOnly()) continue;
+				field.setAccessible(true);
+				try{
+					//Class<?> returnType = field.getType();
+					Values values = getObjectValue(field.getType(), field.get(instance));
+					if (values.isMulti()) node.setProperty(attribute.value(), values.getValues() );
+					else node.setProperty(attribute.value(), values.getValue());
+
+				} catch (Exception e ) {
+					logger.debug("error setting value for attribute "+attribute.value(),e);
+				}
+			}  else if (field.isAnnotationPresent(NodeAttribute.class)){
+				NodeAttribute nodeAttribute = field.getAnnotation(NodeAttribute.class);
+				if (nodeAttribute.isReadOnly()) continue;
+				String subNodeName = nodeAttribute.value();
+				logger.trace("retrieving field node "+field.getName());
+				field.setAccessible(true);
+				try{
+					Object obj = field.get(instance);
+					if (obj!=null) 
+						iterateItemNodeAttributeFields(obj, node, subNodeName);
+				} catch (Exception e ) {
+					logger.debug("error setting value",e);
+				}
+			}
+		}
+	}
+
+	
+	public void updateHidden(Node node, Boolean hidden,String login) throws RepositoryException {
+		Utils.setPropertyOnChangeNode(node, login, ItemAction.UPDATED);
+		node.setProperty(NodeProperty.HIDDEN.toString(), hidden);
+	}
+	
+	public void updateDescription(Node node, String description,String login) throws RepositoryException {
+		Utils.setPropertyOnChangeNode(node, login, ItemAction.UPDATED);
+		node.setProperty(NodeProperty.DESCRIPTION.toString(), description);
+	}
+	
+	@SuppressWarnings("unchecked")
+	public void updateOwnerOnSubTree(Node node, String owner) throws RepositoryException, BackendGenericError {
+		Class<? extends Item> classToHandle = (Class<? extends Item>)ClassHandler.instance().get(node.getPrimaryNodeType().getName());
+		if (classToHandle==null) return;
+		if (classToHandle.isAssignableFrom(FolderItem.class)) {
+			NodeChildrenFilterIterator iterator = new NodeChildrenFilterIterator(node);
+			while (iterator.hasNext()) {
+				Node nextNode = iterator.next();
+				updateOwnerOnSubTree(nextNode, owner);
+			}
+		} 
+		updateOwner(node, owner);
+		
+	}
+	
+	public void updateOwner(Node node, String owner) throws RepositoryException {
+		//Utils.setPropertyOnChangeNode(node, login, ItemAction.UPDATED);
+		if (node.hasProperty(NodeProperty.PORTAL_LOGIN.toString()))
+			node.setProperty(NodeProperty.PORTAL_LOGIN.toString(), owner);
+		else logger.debug("cannot set new owner to {} "+node.getPath());
+	}
+	
 	public <I extends Item> void updateMetadataNode(Node node, Map<String, Object> meta, String login){
 		try {
 
 			//TODO: make a method to update item not only metadata, check if the new metadata has an intersection with the old one to remove properties not needed
-
 			Utils.setPropertyOnChangeNode(node, login, ItemAction.UPDATED);
 
 			Node metadataNode;
@@ -246,7 +331,7 @@ public class Item2NodeConverter {
 							} 
 							
 						} catch (Exception e ) {
-							logger.warn("error setting value",e);
+							logger.debug("error setting value",e);
 						}
 
 				}

src/main/java/org/gcube/data/access/storagehub/handlers/items/ItemHandler.java

@@ -0,0 +1,416 @@
+package org.gcube.data.access.storagehub.handlers.items;
+
+import java.io.BufferedInputStream;
+import java.io.IOException;
+import java.io.InputStream;
+import java.util.HashMap;
+import java.util.HashSet;
+import java.util.Map;
+import java.util.Set;
+
+import jakarta.inject.Inject;
+import jakarta.inject.Singleton;
+import javax.jcr.Node;
+import javax.jcr.RepositoryException;
+import javax.jcr.Session;
+import javax.jcr.lock.LockException;
+import javax.jcr.version.Version;
+
+import org.apache.commons.compress.archivers.ArchiveEntry;
+import org.apache.commons.compress.archivers.ArchiveInputStream;
+import org.apache.commons.compress.archivers.ArchiveStreamFactory;
+import org.apache.tika.config.TikaConfig;
+import org.apache.tika.detect.Detector;
+import org.apache.tika.io.TikaInputStream;
+import org.apache.tika.metadata.Metadata;
+import org.gcube.common.storagehub.model.Excludes;
+import org.gcube.common.storagehub.model.NodeConstants;
+import org.gcube.common.storagehub.model.Paths;
+import org.gcube.common.storagehub.model.exceptions.BackendGenericError;
+import org.gcube.common.storagehub.model.exceptions.IdNotFoundException;
+import org.gcube.common.storagehub.model.exceptions.InvalidCallParameters;
+import org.gcube.common.storagehub.model.exceptions.InvalidItemException;
+import org.gcube.common.storagehub.model.exceptions.ItemLockedException;
+import org.gcube.common.storagehub.model.exceptions.StorageHubException;
+import org.gcube.common.storagehub.model.items.AbstractFileItem;
+import org.gcube.common.storagehub.model.items.FolderItem;
+import org.gcube.common.storagehub.model.storages.MetaInfo;
+import org.gcube.common.storagehub.model.storages.StorageBackend;
+import org.gcube.common.storagehub.model.storages.StorageBackendFactory;
+import org.gcube.common.storagehub.model.types.ItemAction;
+import org.gcube.data.access.storagehub.AuthorizationChecker;
+import org.gcube.data.access.storagehub.Utils;
+import org.gcube.data.access.storagehub.accounting.AccountingHandler;
+import org.gcube.data.access.storagehub.handlers.VersionHandler;
+import org.gcube.data.access.storagehub.handlers.content.ContentHandler;
+import org.gcube.data.access.storagehub.handlers.content.ContentHandlerFactory;
+import org.gcube.data.access.storagehub.handlers.items.builders.ArchiveStructureCreationParameter;
+import org.gcube.data.access.storagehub.handlers.items.builders.CreateParameters;
+import org.gcube.data.access.storagehub.handlers.items.builders.FileCreationParameters;
+import org.gcube.data.access.storagehub.handlers.items.builders.FolderCreationParameters;
+import org.gcube.data.access.storagehub.handlers.items.builders.GCubeItemCreationParameters;
+import org.gcube.data.access.storagehub.handlers.items.builders.URLCreationParameters;
+import org.gcube.data.access.storagehub.handlers.plugins.StorageBackendHandler;
+import org.glassfish.jersey.media.multipart.FormDataContentDisposition;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
+
+@Singleton
+public class ItemHandler {
+
+	@Inject
+	AccountingHandler accountingHandler;
+
+	@Inject
+	ContentHandlerFactory contenthandlerFactory;
+
+	@Inject
+	AuthorizationChecker authChecker;
+
+	@Inject
+	VersionHandler versionHandler;
+
+	@Inject
+	StorageBackendHandler storageBackendHandler;
+
+	// private static ExecutorService executor = Executors.newFixedThreadPool(100);
+
+	@Inject
+	Node2ItemConverter node2Item;
+	@Inject
+	Item2NodeConverter item2Node;
+
+	private static Logger log = LoggerFactory.getLogger(ItemHandler.class);
+
+	// TODO: accounting
+	// provider URI host
+	// resourceOwner user
+	// consumer write
+	// in caso di versione - update con -delta
+	public <T extends CreateParameters> String create(T parameters) throws Exception {
+		Session ses = parameters.getSession();
+
+		Node destination;
+		try {
+			destination = ses.getNodeByIdentifier(parameters.getParentId());
+		} catch (RepositoryException inf) {
+			throw new IdNotFoundException(parameters.getParentId());
+		}
+
+		if (!node2Item.checkNodeType(destination, FolderItem.class))
+			throw new InvalidItemException("the destination item is not a folder");
+
+		authChecker.checkWriteAuthorizationControl(ses, parameters.getUser(), destination.getIdentifier(), true);
+
+		try {
+			Node newNode = switch (parameters.getMangedType()) {
+                case FILE -> create((FileCreationParameters) parameters, destination);
+                case FOLDER -> create((FolderCreationParameters) parameters, destination);
+                case ARCHIVE -> create((ArchiveStructureCreationParameter) parameters, destination);
+                case URL -> create((URLCreationParameters) parameters, destination);
+                case GCUBEITEM -> create((GCubeItemCreationParameters) parameters, destination);
+                default -> throw new InvalidCallParameters("Item not supported");
+            };
+            log.debug("item with id {} correctly created", newNode.getIdentifier());
+			return newNode.getIdentifier();
+		} finally {
+			if (parameters.getSession().getWorkspace().getLockManager().isLocked(destination.getPath()))
+				parameters.getSession().getWorkspace().getLockManager().unlock(destination.getPath());
+		}
+
+	}
+
+	private Node create(FolderCreationParameters params, Node destination) throws Exception {
+		Utils.acquireLockWithWait(params.getSession(), destination.getPath(), false, params.getUser(), 10);
+		Node newNode = Utils.createFolderInternally(params, accountingHandler, false);
+		params.getSession().save();
+		return newNode;
+	}
+
+	private Node create(FileCreationParameters params, Node destination) throws Exception {
+		Node newNode = createFileItemInternally(params.getSession(), destination, params.getStream(), params.getName(),
+				params.getDescription(), params.getFileDetails(), params.getUser(), true);
+		params.getSession().save();
+		versionHandler.checkinContentNode(newNode);
+		return newNode;
+	}
+
+	private Node create(URLCreationParameters params, Node destination) throws Exception {
+		Utils.acquireLockWithWait(params.getSession(), destination.getPath(), false, params.getUser(), 10);
+		Node newNode = Utils.createURLInternally(params.getSession(), destination, params.getName(), params.getUrl(),
+				params.getDescription(), params.getUser(), accountingHandler);
+		params.getSession().save();
+		return newNode;
+	}
+
+	private Node create(ArchiveStructureCreationParameter params, Node destination) throws Exception {
+		Utils.acquireLockWithWait(params.getSession(), destination.getPath(), false, params.getUser(), 10);
+		FolderCreationParameters folderParameters = FolderCreationParameters.builder()
+				.name(params.getParentFolderName()).author(params.getUser()).on(destination.getIdentifier())
+				.with(params.getSession()).build();
+		Node parentDirectoryNode = Utils.createFolderInternally(folderParameters, accountingHandler, false);
+		params.getSession().save();
+		try {
+			if (params.getSession().getWorkspace().getLockManager().isLocked(destination.getPath()))
+				params.getSession().getWorkspace().getLockManager().unlock(destination.getPath());
+		} catch (Throwable t) {
+			log.warn("error unlocking {}", destination.getPath(), t);
+		}
+
+		Set<Node> fileNodes = new HashSet<>();
+
+		HashMap<String, Node> directoryNodeMap = new HashMap<>();
+
+		ArchiveInputStream input = new ArchiveStreamFactory()
+				.createArchiveInputStream(new BufferedInputStream(params.getStream()));
+
+		ArchiveEntry entry;
+		while ((entry = input.getNextEntry()) != null) {
+			String entirePath = entry.getName();
+			log.debug("reading new entry ------> {} ", entirePath);
+			if (entry.isDirectory()) {
+				log.debug("creating directory with entire path {} ", entirePath);
+				createPath(entirePath, directoryNodeMap, parentDirectoryNode, params.getSession(), params.getUser());
+			} else
+				try {
+					String name = entirePath.replaceAll("([^/]*/)*(.*)", "$2");
+					String parentPath = entirePath.replaceAll("(([^/]*/)*)(.*)", "$1");
+					log.debug("creating file with entire path {}, name {}, parentPath {} ", entirePath, name,
+							parentPath);
+					Node fileNode = null;
+					long fileSize = entry.getSize();
+					FormDataContentDisposition fileDetail = FormDataContentDisposition.name(name).size(fileSize)
+							.build();
+					//this code has been added for a bug on s3 client(v1) that closes the stream
+					InputStream notClosableIS = new BufferedInputStream(input) {
+						@Override
+						public void close() throws IOException { }
+					};
+
+					if (parentPath.isEmpty()) {
+						fileNode = createFileItemInternally(params.getSession(), parentDirectoryNode, notClosableIS, name, "",
+								fileDetail, params.getUser(), false);
+					} else {
+						Node parentNode = directoryNodeMap.get(parentPath);
+						if (parentNode == null)
+							parentNode = createPath(parentPath, directoryNodeMap, parentDirectoryNode,
+									params.getSession(), params.getUser());
+						fileNode = createFileItemInternally(params.getSession(), parentNode, notClosableIS, name, "",
+								fileDetail, params.getUser(), false);
+					}
+					fileNodes.add(fileNode);
+				} catch (Throwable e) {
+					log.warn("error getting file {}", entry.getName(), e);
+				}
+		}
+
+		log.info("archive {} uploading finished ", params.getParentFolderName());
+		params.getSession().save();
+		for (Node node : fileNodes)
+			versionHandler.checkinContentNode(node);
+		return parentDirectoryNode;
+	}
+
+
+
+	private Node createPath(String parentPath, Map<String, Node> directoryNodeMap, Node rootNode, Session ses,
+			String user) throws StorageHubException, RepositoryException {
+		String[] parentPathSplit = parentPath.split("/");
+		String name = parentPathSplit[parentPathSplit.length - 1];
+		StringBuilder relParentPath = new StringBuilder();
+		for (int i = 0; i <= parentPathSplit.length - 2; i++)
+			relParentPath.append(parentPathSplit[i]).append("/");
+
+		if (relParentPath.toString().isEmpty()) {
+			FolderCreationParameters folderParameters = FolderCreationParameters.builder().name(name).author(user)
+					.on(rootNode.getIdentifier()).with(ses).build();
+			Node createdNode = Utils.createFolderInternally(folderParameters, accountingHandler, false);
+			directoryNodeMap.put(name + "/", createdNode);
+			return createdNode;
+		} else {
+			Node relParentNode = directoryNodeMap.get(relParentPath.toString());
+			if (relParentNode == null) {
+				relParentNode = createPath(relParentPath.toString(), directoryNodeMap, rootNode, ses, user);
+			}
+
+			FolderCreationParameters folderParameters = FolderCreationParameters.builder().name(name).author(user)
+					.on(relParentNode.getIdentifier()).with(ses).build();
+			Node createdNode = Utils.createFolderInternally(folderParameters, accountingHandler, false);
+			directoryNodeMap.put(relParentPath.append(name).append("/").toString(), createdNode);
+			return createdNode;
+		}
+	}
+
+	private Node create(GCubeItemCreationParameters params, Node destination) throws Exception {
+		Utils.acquireLockWithWait(params.getSession(), destination.getPath(), false, params.getUser(), 10);
+		Node newNode = Utils.createGcubeItemInternally(params.getSession(), destination, params.getItem().getName(),
+				params.getItem().getDescription(), params.getUser(), params.getItem(), accountingHandler);
+		params.getSession().save();
+		return newNode;
+	}
+
+	private Node createFileItemInternally(Session ses, Node destinationNode, InputStream stream, String name,
+			String description, FormDataContentDisposition fileDetails, String login, boolean withLock)
+			throws RepositoryException, StorageHubException {
+
+		log.trace("UPLOAD: starting preparing file");
+
+		Node newNode;
+		FolderItem destinationItem = node2Item.getItem(destinationNode, Excludes.ALL);
+
+		StorageBackendFactory sbf = storageBackendHandler.get(destinationItem.getBackend());
+		
+		StorageBackend sb = sbf.create(destinationItem.getBackend());
+
+		String relativePath = destinationNode.getPath();
+
+		String newNodePath = Paths.append(Paths.getPath(destinationNode.getPath()), name).toPath();
+		log.info("new node path is {}", newNodePath);
+
+		if (ses.nodeExists(newNodePath)) {
+
+			newNode = ses.getNode(newNodePath);
+			authChecker.checkWriteAuthorizationControl(ses, login, newNode.getIdentifier(), false);
+
+			AbstractFileItem item = fillItemWithContent(stream, sb, name, description, fileDetails, relativePath,
+					login);
+
+			if (withLock) {
+				try {
+					ses.getWorkspace().getLockManager().lock(newNode.getPath(), true, true, 0, login);
+				} catch (LockException le) {
+					throw new ItemLockedException(le);
+				}
+			}
+			try {
+				versionHandler.checkoutContentNode(newNode);
+				log.trace("replacing content of class {}", item.getContent().getClass());
+				item2Node.replaceContent(newNode, item, ItemAction.UPDATED);
+				String versionName = null;
+				try {
+					Version version = versionHandler.getCurrentVersion(newNode);
+					versionName = version.getName();
+				} catch (RepositoryException e) {
+					log.warn("current version of {} cannot be retreived", item.getId());
+				}
+				accountingHandler.createFileUpdated(item.getTitle(), versionName, ses, newNode, login, false);
+				ses.save();
+			} catch (Throwable t) {
+				log.error("error saving item", t);
+			} finally {
+				if (withLock) {
+					if (ses != null && ses.hasPendingChanges())
+						ses.save();
+					ses.getWorkspace().getLockManager().unlock(newNode.getPath());
+				}
+			}
+		} else {
+			authChecker.checkWriteAuthorizationControl(ses, login, destinationNode.getIdentifier(), true);
+			AbstractFileItem item = fillItemWithContent(stream, sb, name, description, fileDetails, relativePath,
+					login);
+			if (withLock) {
+				try {
+					log.debug("trying to acquire lock");
+					Utils.acquireLockWithWait(ses, destinationNode.getPath(), false, login, 10);
+				} catch (LockException le) {
+					throw new ItemLockedException(le);
+				}
+			}
+			try {
+				newNode = item2Node.getNode(destinationNode, item);
+				accountingHandler.createEntryCreate(item.getTitle(), ses, newNode, login, false);
+				ses.save();
+			} catch (Throwable t) {
+				log.error("error saving item", t);
+				throw new BackendGenericError(t);
+			} finally {
+				if (withLock)
+					ses.getWorkspace().getLockManager().unlock(destinationNode.getPath());
+			}
+			versionHandler.makeVersionableContent(newNode);
+			accountingHandler.createFolderAddObj(name, item.getClass().getSimpleName(), item.getContent().getMimeType(),
+					ses, login, destinationNode, false);
+		}
+
+		// TODO: Utils.updateParentSize()
+
+		return newNode;
+	}
+
+	private AbstractFileItem fillItemWithContent(InputStream stream, StorageBackend storageBackend, String name,
+			String description, FormDataContentDisposition fileDetails, String relPath, String login)
+			throws BackendGenericError {
+		log.trace("UPLOAD: filling content");
+		ContentHandler handler = getContentHandler(stream, storageBackend, name, fileDetails, relPath, login);
+		return handler.buildItem(name, description, login);
+	}
+
+	private ContentHandler getContentHandler(InputStream stream, StorageBackend storageBackend, String name,
+			FormDataContentDisposition fileDetails, String relPath, String login) throws BackendGenericError {
+
+		log.trace("UPLOAD: handling content");
+
+		long start = System.currentTimeMillis();
+		log.trace("UPLOAD: writing the stream - start");
+		try {
+
+			MetaInfo info = null;
+			try {
+				log.debug("UPLOAD: upload on {} - start", storageBackend.getClass());
+				if (fileDetails != null && fileDetails.getSize() > 0) {
+					log.debug("UPLOAD: file size set is {} Byte", fileDetails.getSize());
+					info = storageBackend.upload(stream, relPath, name, fileDetails.getSize(), login);
+				} else
+					info = storageBackend.upload(stream, relPath, name, login);
+				log.debug("UPLOAD: upload on storage - stop");
+			} catch (Throwable e) {
+				log.error("error writing content", e);
+				throw e;
+			}
+			ContentHandler handler = null;
+			String mimeType;
+			log.debug("UPLOAD: reading the mimetype - start");
+			try (InputStream is1 = new BufferedInputStream(storageBackend.download(info.getStorageId()))) {
+				org.apache.tika.mime.MediaType mediaType = null;
+				TikaConfig config = TikaConfig.getDefaultConfig();
+				Detector detector = config.getDetector();
+				TikaInputStream tikastream = TikaInputStream.get(is1);
+				Metadata metadata = new Metadata();
+				mediaType = detector.detect(tikastream, metadata);
+				mimeType = mediaType.getBaseType().toString();
+				handler = contenthandlerFactory.create(mimeType);
+
+				log.debug("UPLOAD: reading the mimetype {} - finished in {}", mimeType,
+						System.currentTimeMillis() - start);
+			} catch (Throwable e) {
+				log.error("error retrieving mimeType", e);
+				throw new RuntimeException(e);
+			}
+
+			if (handler.requiresInputStream())
+				try (InputStream is1 = new BufferedInputStream(storageBackend.download(info.getStorageId()))) {
+					log.debug("UPLOAD: the file type requires input stream");
+					handler.initiliseSpecificContent(is1, name, mimeType, info.getSize());
+				}
+			else {
+				log.debug("UPLOAD: the file type doesn't requires input stream");
+				handler.initiliseSpecificContent(name, mimeType);
+			}
+			log.debug("UPLOAD: writing the stream - finished in {}", System.currentTimeMillis() - start);
+
+			handler.getContent().setData(NodeConstants.CONTENT_NAME);
+			handler.getContent().setStorageId(info.getStorageId());
+			handler.getContent().setSize(info.getSize());
+			handler.getContent().setRemotePath(info.getRemotePath());
+
+			handler.getContent().setPayloadBackend(info.getPayloadBackend());
+			log.debug("UPLOAD: content payload set as {} ", handler.getContent().getPayloadBackend());
+
+			return handler;
+		} catch (Throwable e) {
+			log.error("error writing file", e);
+			throw new BackendGenericError(e);
+		}
+
+	}
+}

src/main/java/org/gcube/data/access/storagehub/handlers/items/Node2ItemConverter.java

@@ -0,0 +1,417 @@
+package org.gcube.data.access.storagehub.handlers.items;
+
+import java.lang.reflect.Field;
+import java.net.URI;
+import java.net.URL;
+import java.util.ArrayList;
+import java.util.Arrays;
+import java.util.Calendar;
+import java.util.Collections;
+import java.util.HashMap;
+import java.util.HashSet;
+import java.util.List;
+import java.util.Map;
+import java.util.Set;
+
+import javax.jcr.Node;
+import javax.jcr.NodeIterator;
+import javax.jcr.PathNotFoundException;
+import javax.jcr.Property;
+import javax.jcr.PropertyIterator;
+import javax.jcr.PropertyType;
+import javax.jcr.RepositoryException;
+import javax.jcr.Session;
+import javax.jcr.Value;
+import javax.jcr.version.Version;
+
+import org.apache.commons.io.IOUtils;
+import org.apache.jackrabbit.util.Text;
+import org.gcube.common.storagehub.model.annotations.Attribute;
+import org.gcube.common.storagehub.model.annotations.AttributeRootNode;
+import org.gcube.common.storagehub.model.annotations.ListNodes;
+import org.gcube.common.storagehub.model.annotations.MapAttribute;
+import org.gcube.common.storagehub.model.annotations.NodeAttribute;
+import org.gcube.common.storagehub.model.exceptions.BackendGenericError;
+import org.gcube.common.storagehub.model.items.ExternalFolder;
+import org.gcube.common.storagehub.model.items.Item;
+import org.gcube.common.storagehub.model.items.RootItem;
+import org.gcube.common.storagehub.model.items.SharedFolder;
+import org.gcube.common.storagehub.model.items.TrashItem;
+import org.gcube.common.storagehub.model.items.nodes.Content;
+import org.gcube.common.storagehub.model.messages.Message;
+import org.gcube.data.access.storagehub.Constants;
+import org.gcube.data.access.storagehub.handlers.ClassHandler;
+import org.gcube.data.access.storagehub.predicates.ItemTypePredicate;
+import org.reflections.Configuration;
+import org.reflections.Reflections;
+import org.reflections.util.ConfigurationBuilder;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
+
+import jakarta.inject.Singleton;
+
+@Singleton
+@SuppressWarnings("rawtypes")
+public class Node2ItemConverter {
+
+	private static final Logger logger = LoggerFactory.getLogger(Node2ItemConverter.class);
+
+
+	private static HashMap<Class<?>, Map<String, Class>> typeToSubtypeMap = new HashMap<>();
+
+	public <T extends Item> T getFilteredItem(Node node, List<String> excludes, ItemTypePredicate itemTypePredicate) throws RepositoryException, BackendGenericError{
+		@SuppressWarnings("unchecked")
+		Class<T> classToHandle = (Class<T>)ClassHandler.instance().get(node.getPrimaryNodeType().getName());
+		if (classToHandle==null) return null;
+		if (itemTypePredicate != null && !itemTypePredicate.test(classToHandle)) return null;
+		else return retrieveItem(node, excludes, classToHandle);
+	}
+
+	public <T extends Item> T getItem(String nodeIdentifier, Session session, List<String> excludes) throws RepositoryException, BackendGenericError{
+		Node node = session.getNodeByIdentifier(nodeIdentifier);
+		return getItem(node, excludes);
+	}	
+
+	public <T extends Item> T getItem(Node node, List<String> excludes) throws RepositoryException, BackendGenericError{
+		@SuppressWarnings("unchecked")
+		Class<T> classToHandle = (Class<T>)ClassHandler.instance().get(node.getPrimaryNodeType().getName());
+		if (classToHandle==null) return null;
+		T item =  retrieveItem(node, excludes, classToHandle);
+		return item;
+	}
+
+	public Content getContentFromVersion(Version node) throws RepositoryException, BackendGenericError{
+		Content content = new Content();
+		setGenericFields(node.getFrozenNode(), Content.class, null, content);
+		return content;
+	}
+
+	public Message getMessageItem(Node node) throws RepositoryException{
+		if (!(node.getPrimaryNodeType().getName().equals("nthl:itemSentRequest")
+				|| node.getPrimaryNodeType().getName().equals("nthl:itemSentRequestSH")))
+			return null;
+		Message msg = new Message();
+		try {
+			Node attachmentNode = node.getNode(Constants.ATTACHMENTNODE_NAME);
+			msg.setWithAttachments(attachmentNode.hasNodes());
+		}catch (Throwable e) {
+			msg.setWithAttachments(false);
+		}
+
+		setRootItemCommonFields(node, Collections.emptyList(), Message.class, msg);
+		return msg;
+	}
+
+
+	private <T extends Item> T retrieveItem(Node node, List<String> excludes, Class<T> classToHandle) throws RepositoryException, BackendGenericError{
+		T item;
+		try {
+			item = classToHandle.getDeclaredConstructor().newInstance();
+		}catch (Exception e) {
+			throw new BackendGenericError(e);
+		}
+
+		try {
+			item.setShared(SharedFolder.class.isInstance(item) || 
+					hasTypedParent(node, SharedFolder.class));
+		}catch (Exception e) {
+			item.setShared(false);
+		}
+
+		try {
+			item.setTrashed(TrashItem.class.isInstance(item) || 
+					hasTypedParent(node, TrashItem.class));
+		}catch (Exception e) {
+			item.setTrashed(false);
+		}
+
+		try {
+			item.setExternalManaged(hasTypedParent(node, ExternalFolder.class));
+		}catch (Exception e) {
+			item.setExternalManaged(false);
+		}
+
+
+		item.setLocked(node.isLocked());
+
+		setRootItemCommonFields(node, excludes, classToHandle, item);
+
+		return item;
+	}
+
+
+
+	private <T extends Item> boolean hasTypedParent(Node node, Class<T> parentType) throws BackendGenericError, RepositoryException{
+		if(node==null) return false;
+		return checkNodeType(node, parentType) || hasTypedParent(node.getParent(), parentType);
+	}
+
+
+	private <T extends RootItem> void setRootItemCommonFields(Node node, List<String> excludes, Class<T> classToHandle, T instance) throws RepositoryException{
+
+		try{
+			instance.setParentId(node.getParent().getIdentifier());
+			instance.setParentPath(node.getParent().getPath());
+		}catch (Throwable e) {
+			logger.trace("Root node doesn't have a parent");
+		}
+
+		instance.setRelatedNode(node);
+
+		instance.setId(node.getIdentifier());
+		instance.setName(Text.unescapeIllegalJcrChars(node.getName()));
+
+		instance.setPath(Text.unescapeIllegalJcrChars(node.getPath()));
+
+		instance.setPrimaryType(node.getPrimaryNodeType().getName());
+
+		setGenericFields(node, classToHandle, excludes, instance);
+
+	}
+
+	private <T> void setGenericFields(Node node, Class<T> classToHandle,List<String> excludes, T instance){
+		for (Field field : retrieveAllFields(classToHandle)){
+			if (field.isAnnotationPresent(Attribute.class)){
+				setAttributeFieldCheckingDefault(field, instance, node);
+			} else if (field.isAnnotationPresent(NodeAttribute.class)){
+				String fieldNodeName = field.getAnnotation(NodeAttribute.class).value();
+				//for now it excludes only first level node
+				if (excludes!=null && excludes.contains(fieldNodeName)) continue;
+				//for now it excludes only first level node
+				logger.trace("retrieving field node "+field.getName());
+				field.setAccessible(true);
+				try{
+					Node fieldNode = node.getNode(fieldNodeName); 
+					logger.trace("looking in node {} searched with {}",fieldNode.getName(),fieldNodeName);
+					field.set(instance, iterateNodeAttributeFields(field.getType(), fieldNode));
+				}catch(PathNotFoundException e){
+					logger.trace("the current node dosn't contain {} node",fieldNodeName);
+				} catch (Exception e ) {
+					logger.trace("error setting value",e);
+				}
+
+
+			}
+		}
+	}
+
+	private <T> T iterateNodeAttributeFields(Class<T> clazz, Node node) throws Exception{
+		T obj = clazz.getDeclaredConstructor().newInstance();
+		for (Field field : retrieveAllFields(clazz)){
+			if (field.isAnnotationPresent(Attribute.class)){
+				setAttributeFieldCheckingDefault(field, obj, node);
+			} else if (field.isAnnotationPresent(MapAttribute.class)){
+				logger.trace("found field {} of type annotated as MapAttribute in class {} and node name {}", field.getName(), clazz.getName(), node.getName());
+				setMapAttribute(field, obj, node);
+			} else if (field.isAnnotationPresent(ListNodes.class)){
+				logger.trace("found field {} of type annotated as ListNodes in class {} on node {}", field.getName(), clazz.getName(), node.getName());
+				setListNode(field, obj, node);
+			} else if (field.isAnnotationPresent(NodeAttribute.class)){
+				logger.trace("found field {} of type annotated as NodeAttribute in class {} on node {}", field.getName(), clazz.getName(), node.getName());
+				String fieldNodeName = field.getAnnotation(NodeAttribute.class).value();
+				//for now it excludes only first level node
+				//if (excludes!=null && excludes.contains(fieldNodeName)) continue;
+				//for now it excludes only first level node
+				logger.trace("retrieving field node {} on field {}", fieldNodeName, field.getName());
+				field.setAccessible(true);
+				try{
+					Node fieldNode = node.getNode(fieldNodeName); 
+					logger.trace("looking in node {} searched with {}",fieldNode.getName(),fieldNodeName);
+					field.set(obj, iterateNodeAttributeFields(field.getType(), fieldNode));
+				}catch(PathNotFoundException e){
+					logger.trace("the current node dosn't contain {} node",fieldNodeName);
+				} catch (Exception e ) {
+					logger.trace("error setting value",e);
+				}
+
+
+			}
+		}
+		return obj;
+	}
+
+	private <T> void setMapAttribute(Field field, T instance, Node node) throws Exception{
+		field.setAccessible(true);
+		String exclude = field.getAnnotation(MapAttribute.class).excludeStartWith();
+		Map<String, Object> mapToset = new HashMap<String, Object>();
+		PropertyIterator iterator = node.getProperties();
+		if (iterator!=null) {
+			while (iterator.hasNext()){
+				Property prop = iterator.nextProperty();
+				if (!exclude.isEmpty() && prop.getName().startsWith(exclude)) continue;
+				try{
+					logger.trace("adding {} in the map",prop.getName());
+
+					mapToset.put(prop.getName(), getPropertyValue(prop));
+				}catch(PathNotFoundException e){
+					logger.trace("the property {}  is not mapped",prop.getName());
+				} catch (Exception e ) {
+					logger.trace("error setting value {}",e);
+				}
+			}
+		}
+		field.set(instance, mapToset);
+	}
+
+
+	@SuppressWarnings("unchecked")
+	private <T> void setListNode(Field field, T instance, Node node) throws Exception{
+		field.setAccessible(true);
+		String exclude = field.getAnnotation(ListNodes.class).excludeTypeStartWith();
+		String include = field.getAnnotation(ListNodes.class).includeTypeStartWith();
+
+		Class listType = field.getAnnotation(ListNodes.class).listClass();
+
+		Map<String, Class> subTypesMap = Collections.emptyMap();
+
+		if (!typeToSubtypeMap.containsKey(listType)) {
+
+			Configuration config = new ConfigurationBuilder().forPackages(listType.getPackage().getName());
+			Reflections reflections = new Reflections(config);
+			Set<Class> subTypes = reflections.getSubTypesOf(listType);
+
+
+			if (subTypes.size()>0) {
+				subTypesMap = new HashMap<>();
+				for (Class subtype: subTypes) 
+					if (subtype.isAnnotationPresent(AttributeRootNode.class)) {
+						AttributeRootNode attributeRootNode = (AttributeRootNode)subtype.getAnnotation(AttributeRootNode.class);
+						subTypesMap.put(attributeRootNode.value(), subtype);
+					}
+			} else logger.trace("no subtypes found for {}",listType.getName());
+
+			typeToSubtypeMap.put(listType, subTypesMap);
+
+		} else {
+			logger.debug("subtypes already found in cache");
+			subTypesMap = typeToSubtypeMap.get(listType);
+		}
+
+		List<Object> toSetList = new ArrayList<>();
+
+		NodeIterator iterator = node.getNodes();
+
+		while (iterator.hasNext()){
+			Node currentNode = iterator.nextNode();
+
+			String primaryType = currentNode.getPrimaryNodeType().getName();
+
+			logger.trace("the current node {} has a list",currentNode.getName());
+
+			if (!include.isEmpty() && !primaryType.startsWith(include))
+				continue;
+			if (!exclude.isEmpty() && primaryType.startsWith(exclude))
+				continue;
+			if (subTypesMap.containsKey(primaryType))
+				toSetList.add(iterateNodeAttributeFields(subTypesMap.get(primaryType), currentNode));
+			else toSetList.add(iterateNodeAttributeFields(listType, currentNode));
+		}
+		if (toSetList.size()!=0) field.set(instance, toSetList);
+	}
+
+
+	private <T> void setAttributeFieldCheckingDefault(Field field, T instance, Node node) {
+		Attribute attribute = field.getAnnotation(Attribute.class);
+		field.setAccessible(true);
+		try{
+			Object propValue;
+			Class<?> returnType = field.getType();
+			if (node.hasProperty(attribute.value())) {
+				propValue = getPropertyValue(returnType, node.getProperty(attribute.value()));
+				if (!attribute.defaultValue().isEmpty() && propValue==null )
+					propValue = returnType.cast(attribute.defaultValue());
+				field.set(instance, propValue);
+				logger.trace("retrieve item - added field {}",field.getName());
+			} else if (!attribute.defaultValue().isEmpty()){
+				propValue = returnType.cast(attribute.defaultValue());
+				field.set(instance, propValue);
+				logger.trace("retrieve item - setting default for field {}",field.getName());
+			} else 
+				logger.trace("property not found for field {}",field.getName());
+
+		} catch (Exception e ) {
+			logger.debug("error setting value for property {} ",attribute.value());
+		}
+	}
+
+
+	@SuppressWarnings({ "unchecked" })
+	private Object getPropertyValue(Class returnType, Property prop) throws Exception{
+		if (returnType.equals(String.class))  return prop.getString();
+		if (returnType.isEnum())  return Enum.valueOf(returnType, prop.getString());
+		if (returnType.equals(Calendar.class))  return prop.getDate();
+		if (returnType.equals(URL.class))  return new URI(prop.getString()).toURL();
+		if (returnType.equals(Boolean.class) || returnType.equals(boolean.class))  return prop.getBoolean();
+		if (returnType.equals(Long.class) || returnType.equals(long.class)) return prop.getLong();
+		if (returnType.equals(Integer.class) || returnType.equals(int.class)) return prop.getLong();
+		if (returnType.isArray()) {
+			if (prop.getType()==PropertyType.BINARY) {
+				byte[] bytes = IOUtils.toByteArray(prop.getBinary().getStream());
+				return bytes;	
+			} else {
+				Object[] ret= getArrayValue(prop);
+				return Arrays.copyOf(ret, ret.length, returnType);
+			}
+		} 
+		throw new Exception(String.format("class %s not recognized",returnType.getName()));
+	}
+
+	private static Set<Field> retrieveAllFields(Class<?> clazz){
+
+		Set<Field> fields = new HashSet<Field>();
+		Class<?> currentClass = clazz;
+		do{
+			List<Field> fieldsFound = Arrays.asList(currentClass.getDeclaredFields());
+			fields.addAll(fieldsFound);
+		}while ((currentClass =currentClass.getSuperclass())!=null);
+		return fields;
+	}
+
+	private Object getPropertyValue(Property prop) throws Exception{
+		if (prop.isMultiple()){
+			Object[] values = new Object[prop.getValues().length];
+			int i = 0;
+			for (Value value : prop.getValues())
+				values[i++] = getSingleValue(value);
+			return values;
+		} else
+			return getSingleValue(prop.getValue());
+
+	}
+
+	private Object getSingleValue(Value value) throws Exception{
+		switch (value.getType()) {
+		case PropertyType.DATE:
+			return value.getDate();
+		case PropertyType.BOOLEAN:
+			return value.getBoolean();
+		case PropertyType.LONG:
+			return value.getDate();
+		default:
+			return value.getString();
+		}
+	}
+
+	private Object[] getArrayValue(Property prop) throws Exception{
+		Object[] values = new Object[prop.getValues().length];
+		int i = 0;
+		for (Value value : prop.getValues())
+			values[i++] = getSingleValue(value);
+		return values;
+	}
+
+	//Checks if a node is a subtype of classToCompare	
+	public boolean checkNodeType(Node node, Class<? extends Item> classToCompare) throws BackendGenericError{
+		try {
+
+			logger.trace("class from nodetype is {} and class to compare is {}",ClassHandler.instance().get(node.getPrimaryNodeType().getName()), classToCompare);
+
+			return classToCompare.isAssignableFrom(ClassHandler.instance().get(node.getPrimaryNodeType().getName()));
+
+			//(node.isNodeType(ClassHandler.instance().getNodeType(classToCompare)));
+		}catch (Throwable e) {
+			throw new BackendGenericError(e);
+		}
+	}
+
+}

src/main/java/org/gcube/data/access/storagehub/handlers/items/builders/ArchiveStructureCreationParameter.java

@@ -0,0 +1,75 @@
+package org.gcube.data.access.storagehub.handlers.items.builders;
+
+import java.io.InputStream;
+import java.util.Objects;
+
+import org.glassfish.jersey.media.multipart.FormDataContentDisposition;
+
+public class ArchiveStructureCreationParameter extends CreateParameters {
+
+	String parentFolderName; 
+	FormDataContentDisposition fileDetails;
+	InputStream stream;
+	
+	
+	protected ArchiveStructureCreationParameter() {}
+
+	public String getParentFolderName() {
+		return parentFolderName;
+	}
+	
+	public FormDataContentDisposition getFileDetails() {
+		return fileDetails;
+	}
+
+	public InputStream getStream() {
+		return stream;
+	}
+
+	@Override
+	protected boolean isValid() {
+		return Objects.nonNull(parentFolderName) && Objects.nonNull(stream);
+	}
+	
+	@Override
+	public String toString() {
+		return "FileCreationParameters [parentFolder=" + parentFolderName + ", fileDetails=" + fileDetails
+				+ ", parentId=" + parentId + ", user=" + user + "]";
+	}
+
+	public static ArchiveCreationBuilder builder() {
+		return new ArchiveCreationBuilder();
+	}
+	
+	public static class ArchiveCreationBuilder extends ItemsParameterBuilder<ArchiveStructureCreationParameter>{
+
+		private ArchiveCreationBuilder() {
+			super(new ArchiveStructureCreationParameter());
+		}
+		
+		public ArchiveCreationBuilder parentName(String name) {
+			parameters.parentFolderName = name;
+			return this;		
+		}
+	
+		
+		public ArchiveCreationBuilder stream(InputStream stream) {
+			parameters.stream = stream;
+			return this;
+		}
+		
+		public ArchiveCreationBuilder fileDetails(FormDataContentDisposition fileDetails) {
+			parameters.fileDetails = fileDetails;
+			return this;
+		}
+		
+	}
+
+	@Override
+	public ManagedType getMangedType() {
+		return ManagedType.ARCHIVE;
+	}
+
+	
+
+}

src/main/java/org/gcube/data/access/storagehub/handlers/items/builders/CreateParameters.java

@@ -0,0 +1,38 @@
+package org.gcube.data.access.storagehub.handlers.items.builders;
+
+import javax.jcr.Session;
+
+public abstract class CreateParameters {
+
+	public enum ManagedType {
+		FILE, 
+		FOLDER, 
+		ARCHIVE, 
+		URL, 
+		GCUBEITEM;
+	}
+	
+	String parentId;
+	Session session;
+	String user;
+	
+	protected CreateParameters() {}
+
+	public abstract ManagedType getMangedType();
+	
+	public String getParentId() {
+		return parentId;
+	}
+
+	public Session getSession() {
+		return session;
+	}
+	
+	public String getUser() {
+		return user;
+	}
+
+	protected abstract boolean isValid();
+	
+	public abstract String toString();
+}

src/main/java/org/gcube/data/access/storagehub/handlers/items/builders/FileCreationParameters.java

@@ -0,0 +1,82 @@
+package org.gcube.data.access.storagehub.handlers.items.builders;
+
+import java.io.InputStream;
+import java.util.Objects;
+
+import org.glassfish.jersey.media.multipart.FormDataContentDisposition;
+
+public class FileCreationParameters extends CreateParameters {
+
+	String name;
+	String description; 
+	FormDataContentDisposition fileDetails;
+	InputStream stream;
+	
+	
+	protected FileCreationParameters() {}
+
+	public String getName() {
+		return name;
+	}
+
+	public String getDescription() {
+		return description;
+	}
+	
+	public FormDataContentDisposition getFileDetails() {
+		return fileDetails;
+	}
+
+	public InputStream getStream() {
+		return stream;
+	}
+
+	@Override
+	protected boolean isValid() {
+		return Objects.nonNull(name) && Objects.nonNull(description) && Objects.nonNull(stream);
+	}
+	
+	@Override
+	public String toString() {
+		return "FileCreationParameters [name=" + name + ", description=" + description + ", fileDetails=" + fileDetails
+				+ ", parentId=" + parentId + ", user=" + user + "]";
+	}
+
+	public static FileCreationBuilder builder() {
+		return new FileCreationBuilder();
+	}
+	
+	public static class FileCreationBuilder extends ItemsParameterBuilder<FileCreationParameters>{
+
+		private FileCreationBuilder() {
+			super(new FileCreationParameters());
+		}
+		
+		public FileCreationBuilder name(String name) {
+			parameters.name = name;
+			return this;		
+		}
+
+		public FileCreationBuilder description(String description) {
+			parameters.description = description;
+			return this;
+		}
+		
+		public FileCreationBuilder stream(InputStream stream) {
+			parameters.stream = stream;
+			return this;
+		}
+		
+		public FileCreationBuilder fileDetails(FormDataContentDisposition fileDetails) {
+			parameters.fileDetails = fileDetails;
+			return this;
+		}
+		
+	}
+
+	@Override
+	public ManagedType getMangedType() {
+		return ManagedType.FILE;
+	}
+
+}

src/main/java/org/gcube/data/access/storagehub/handlers/items/builders/FolderCreationParameters.java

@@ -0,0 +1,107 @@
+package org.gcube.data.access.storagehub.handlers.items.builders;
+
+import java.util.Map;
+import java.util.Objects;
+
+import org.gcube.common.storagehub.model.Metadata;
+import org.gcube.common.storagehub.model.items.nodes.PayloadBackend;
+import org.gcube.common.storagehub.model.plugins.PluginParameters;
+
+public class FolderCreationParameters extends CreateParameters {
+	
+	private String name;
+	private String description=""; 
+	private boolean hidden = false;
+	private PayloadBackend backend;
+	
+	
+	protected FolderCreationParameters() {}
+
+	public String getName() {
+		return name;
+	}
+
+	public String getDescription() {
+		return description;
+	}
+
+	public boolean isHidden() {
+		return hidden;
+	}
+
+	public PayloadBackend getBackend() {
+		return backend;
+	}
+	
+	@Override
+	protected boolean isValid() {
+		return Objects.nonNull(name) && Objects.nonNull(description);
+	}
+
+	@Override
+	public String toString() {
+		return "FolderCreationParameters [name=" + name + ", description=" + description + ", hidden=" + hidden
+				+ ", parentId=" + parentId + ", session=" + session + ", user=" + user + "]";
+	}
+	
+	
+	public static FolderCreationBuilder builder() {
+		return new FolderCreationBuilder();
+	}
+	
+	public static class FolderCreationBuilder extends ItemsParameterBuilder<FolderCreationParameters>{
+
+		private FolderCreationBuilder() {
+			super(new FolderCreationParameters());
+		}
+		
+		public FolderCreationBuilder name(String name) {
+			parameters.name = name;
+			return this;		
+		}
+
+		public FolderCreationBuilder description(String description) {
+			parameters.description = description;
+			return this;
+		}
+		
+		public BackendCreationBuilder onRepository(String pluginName) {
+			return new BackendCreationBuilder(pluginName, this);
+		}
+		
+		public FolderCreationBuilder hidden(boolean hidden) {
+			parameters.hidden = hidden;
+			return this;
+		}
+
+	}
+	
+	public static class BackendCreationBuilder {
+		
+		FolderCreationBuilder cb;
+		
+		String plugin;
+		
+		protected BackendCreationBuilder(String pluginName, FolderCreationBuilder cb) {
+			this.cb = cb;
+			this.plugin = pluginName;
+		}
+		
+		public FolderCreationBuilder withParameters(Map<String, Object> params){
+			this.cb.parameters.backend = new PayloadBackend(plugin, new Metadata(params));
+			return this.cb;
+		}
+		
+		public FolderCreationBuilder withoutParameters(){
+			this.cb.parameters.backend = new PayloadBackend(plugin, null);
+			return this.cb;
+		}
+		
+	}
+	
+
+	@Override
+	public ManagedType getMangedType() {
+		return ManagedType.FOLDER;
+	}
+}

src/main/java/org/gcube/data/access/storagehub/handlers/items/builders/GCubeItemCreationParameters.java

@@ -0,0 +1,49 @@
+package org.gcube.data.access.storagehub.handlers.items.builders;
+
+import java.util.Objects;
+
+import org.gcube.common.storagehub.model.items.GCubeItem;
+
+public class GCubeItemCreationParameters extends CreateParameters{
+
+	GCubeItem item;
+	
+	
+	protected GCubeItemCreationParameters() {}
+
+	public GCubeItem getItem() {
+		return item;
+	}
+
+	@Override
+	protected boolean isValid() {
+		return Objects.nonNull(item);
+	}
+
+	@Override
+	public String toString() {
+		return "GCubeItemCreationParameters [item=" + item + ", parentId=" + parentId + ", user=" + user + "]";
+	}
+
+	public static GCubeItemCreationBuilder builder() {
+		return new GCubeItemCreationBuilder();
+	}
+	
+	public static class GCubeItemCreationBuilder extends ItemsParameterBuilder<GCubeItemCreationParameters>{
+
+		private GCubeItemCreationBuilder() {
+			super(new GCubeItemCreationParameters());
+		}
+		
+		public GCubeItemCreationBuilder item(GCubeItem item) {
+			parameters.item = item;
+			return this;		
+		}
+
+	}
+	
+	@Override
+	public ManagedType getMangedType() {
+		return ManagedType.GCUBEITEM;
+	}
+}

src/main/java/org/gcube/data/access/storagehub/handlers/items/builders/ItemsParameterBuilder.java

@@ -0,0 +1,39 @@
+package org.gcube.data.access.storagehub.handlers.items.builders;
+
+import java.util.Objects;
+
+import javax.jcr.Session;
+
+import org.gcube.common.storagehub.model.exceptions.InvalidCallParameters;
+
+public abstract class ItemsParameterBuilder<T extends CreateParameters> {
+
+	T parameters;
+	
+	protected ItemsParameterBuilder(T parameters) {
+		super();
+		this.parameters = parameters;
+	}
+	
+	public ItemsParameterBuilder<T> on(String parentId) {
+		parameters.parentId = parentId;
+		return this;
+	}
+	
+	public ItemsParameterBuilder<T> author(String author) {
+		parameters.user = author;
+		return this;
+	}
+	
+	public ItemsParameterBuilder<T> with(Session session){
+		parameters.session = session;
+		return this;
+	}
+	
+	public T build() throws InvalidCallParameters {
+		if (!(parameters.isValid() && Objects.nonNull(parameters.parentId)))
+			throw new InvalidCallParameters("invalid call");
+		return parameters;
+	}
+	
+}

src/main/java/org/gcube/data/access/storagehub/handlers/items/builders/URLCreationParameters.java

@@ -0,0 +1,69 @@
+package org.gcube.data.access.storagehub.handlers.items.builders;
+
+import java.net.URL;
+import java.util.Objects;
+
+public class URLCreationParameters extends CreateParameters {
+
+	String name;
+	String description; 
+	URL url;
+	
+	
+	protected URLCreationParameters() {}
+
+	public String getName() {
+		return name;
+	}
+
+	public String getDescription() {
+		return description;
+	}
+
+	public URL getUrl() {
+		return url;
+	}
+
+	@Override
+	protected boolean isValid() {
+		return Objects.nonNull(name) && Objects.nonNull(description) && Objects.nonNull(url);
+	}
+
+	@Override
+	public String toString() {
+		return "URLCreationParameters [name=" + name + ", description=" + description + ", url=" + url + ", parentId="
+				+ parentId + ", user=" + user + "]";
+	}
+
+	public static URLCreationBuilder builder() {
+		return new URLCreationBuilder();
+	}
+	
+	public static class URLCreationBuilder extends ItemsParameterBuilder<URLCreationParameters>{
+
+		private URLCreationBuilder() {
+			super(new URLCreationParameters());
+		}
+		
+		public URLCreationBuilder name(String name) {
+			parameters.name = name;
+			return this;		
+		}
+
+		public URLCreationBuilder description(String description) {
+			parameters.description = description;
+			return this;
+		}
+		
+		public URLCreationBuilder url(URL url) {
+			parameters.url = url;
+			return this;
+		}
+
+	}
+	
+	@Override
+	public ManagedType getMangedType() {
+		return ManagedType.URL;
+	}
+}

src/main/java/org/gcube/data/access/storagehub/handlers/plugins/StorageBackendHandler.java

@@ -0,0 +1,61 @@
+package org.gcube.data.access.storagehub.handlers.plugins;
+
+import java.util.Collection;
+import java.util.HashMap;
+import java.util.Map;
+
+import org.gcube.common.storagehub.model.exceptions.PluginNotFoundException;
+import org.gcube.common.storagehub.model.items.nodes.PayloadBackend;
+import org.gcube.common.storagehub.model.storages.StorageBackendFactory;
+import org.gcube.common.storagehub.model.storages.StorageNames;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
+
+import jakarta.annotation.PostConstruct;
+import jakarta.enterprise.inject.Instance;
+import jakarta.inject.Inject;
+import jakarta.inject.Singleton;
+
+@Singleton
+public class StorageBackendHandler {
+
+	private static Logger log = LoggerFactory.getLogger(StorageBackendHandler.class);
+
+	public static PayloadBackend getDefaultPayloadForFolder() {
+		return new PayloadBackend(StorageNames.DEFAULT_S3_STORAGE, null);
+	}
+
+	@Inject
+	Instance<StorageBackendFactory> factories;
+
+	Map<String, StorageBackendFactory> storagebackendMap = new HashMap<String, StorageBackendFactory>();
+
+	@PostConstruct
+	void init() {
+		if (factories != null)
+			for (StorageBackendFactory connector : factories) {
+				if (storagebackendMap.containsKey(connector.getName())) {
+					log.error("multiple storage backend with the same name");
+					throw new RuntimeException("multiple storage backend with the same name");
+				}
+				storagebackendMap.put(connector.getName(), connector);
+			}
+		else
+			throw new RuntimeException("storage backend implementation not found");
+	}
+
+	public StorageBackendFactory get(PayloadBackend payload) throws PluginNotFoundException {
+		if (payload == null || !storagebackendMap.containsKey(payload.getStorageName()))
+			throw new PluginNotFoundException(
+					String.format("implementation for storage %s not found", payload.getStorageName()));
+		return storagebackendMap.get(payload.getStorageName());
+	}
+
+	public StorageBackendFactory get(String storageName) throws PluginNotFoundException {
+		return storagebackendMap.get(storageName);
+	}
+
+	public Collection<StorageBackendFactory> getAllImplementations() {
+		return storagebackendMap.values();
+	}
+}

src/main/java/org/gcube/data/access/storagehub/handlers/plugins/StorageOperationMediator.java

@@ -0,0 +1,51 @@
+package org.gcube.data.access.storagehub.handlers.plugins;
+
+import java.io.InputStream;
+
+import jakarta.inject.Inject;
+import jakarta.inject.Singleton;
+
+import org.gcube.common.storagehub.model.exceptions.StorageHubException;
+import org.gcube.common.storagehub.model.items.nodes.Content;
+import org.gcube.common.storagehub.model.items.nodes.PayloadBackend;
+import org.gcube.common.storagehub.model.storages.MetaInfo;
+import org.gcube.common.storagehub.model.storages.StorageBackend;
+import org.gcube.common.storagehub.model.storages.StorageBackendFactory;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
+
+@Singleton
+public class StorageOperationMediator {
+
+	Logger log = LoggerFactory.getLogger(StorageOperationMediator.class);
+
+	@Inject
+	StorageBackendHandler storageBackendHandler;
+
+	public MetaInfo copy(Content source, PayloadBackend destination, String newName, String newParentPath, String login) throws StorageHubException{
+
+		log.info("creating Storages for source {} and destination {}", source.getPayloadBackend(), destination.getStorageName());
+
+		StorageBackendFactory sourceSBF = storageBackendHandler.get(source.getPayloadBackend());
+		//TODO: add metadata taken from content node
+		StorageBackend sourceSB = sourceSBF.create(source.getPayloadBackend());
+
+		StorageBackendFactory destSBF = storageBackendHandler.get(destination);
+		StorageBackend destSB = destSBF.create(destination);
+
+		log.info("source factory is {} and destination factory is {}", sourceSBF.getName(), destSBF.getName());
+
+		if (sourceSB.equals(destSB)) {
+			log.info("source and destination are the same storage");
+			return sourceSB.onCopy(source, newParentPath, newName);
+		}else {
+			log.info("source and destination are different storage");
+			InputStream stream = sourceSB.download(source);
+			return destSB.upload(stream, newParentPath, newName, source.getSize(), login);
+		}
+	}
+
+	public boolean move(){
+		return true;
+	}
+}

src/main/java/org/gcube/data/access/storagehub/handlers/vres/VRE.java

@@ -1,4 +1,4 @@
-package org.gcube.data.access.storagehub.handlers;
+package org.gcube.data.access.storagehub.handlers.vres;
 
 import java.util.List;
 import java.util.concurrent.ExecutorService;
@@ -9,6 +9,7 @@ import javax.jcr.SimpleCredentials;
 
 import org.gcube.common.storagehub.model.exceptions.BackendGenericError;
 import org.gcube.common.storagehub.model.items.Item;
+import org.gcube.data.access.storagehub.handlers.items.Node2ItemConverter;
 import org.slf4j.Logger;
 import org.slf4j.LoggerFactory;
 
@@ -21,11 +22,11 @@ public class VRE {
 	private VREQueryRetriever vreQueryRetriever;
 	private ExecutorService executor;
 
-	public VRE(Item item, Repository repository, SimpleCredentials credentials, ExecutorService executor) {
+	protected VRE(Item item, Repository repository, SimpleCredentials credentials, Node2ItemConverter node2Item, ExecutorService executor) {
 		super();
 		this.vreFolder = item;
 		this.executor = executor;
-		vreQueryRetriever = new VREQueryRetriever(repository, credentials, vreFolder);
+		vreQueryRetriever = new VREQueryRetriever(repository, credentials, node2Item, vreFolder);
 		result = executor.submit(vreQueryRetriever);
 	}
 

src/main/java/org/gcube/data/access/storagehub/handlers/vres/VREManager.java

@@ -0,0 +1,89 @@
+package org.gcube.data.access.storagehub.handlers.vres;
+
+import java.util.HashMap;
+import java.util.List;
+import java.util.Map;
+import java.util.concurrent.ExecutorService;
+import java.util.concurrent.Executors;
+
+import javax.jcr.Node;
+import javax.jcr.RepositoryException;
+
+import org.apache.jackrabbit.api.JackrabbitSession;
+import org.gcube.common.security.ContextBean;
+import org.gcube.common.security.ContextBean.Type;
+import org.gcube.common.storagehub.model.exceptions.BackendGenericError;
+import org.gcube.common.storagehub.model.exceptions.StorageHubException;
+import org.gcube.common.storagehub.model.items.Item;
+import org.gcube.data.access.storagehub.Constants;
+import org.gcube.data.access.storagehub.PathUtil;
+import org.gcube.data.access.storagehub.handlers.items.Node2ItemConverter;
+import org.gcube.data.access.storagehub.repository.StoragehubRepository;
+import org.gcube.data.access.storagehub.services.delegates.GroupManagerDelegate;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
+
+import jakarta.inject.Inject;
+import jakarta.inject.Singleton;
+
+@Singleton
+public class VREManager {
+
+	private static final Logger logger = LoggerFactory.getLogger(VREManager.class);
+	
+	private Map<String, VRE> vreMap = new HashMap<>();
+	
+	StoragehubRepository repository = StoragehubRepository.repository;
+	
+	@Inject
+	Node2ItemConverter node2Item;
+	
+	@Inject
+	PathUtil pathUtil;
+	
+	@Inject 
+	GroupManagerDelegate groupHandler;
+	
+	ExecutorService executor = Executors.newFixedThreadPool(5);
+	
+		
+	private synchronized VRE getVRE(String completeName) {
+		logger.trace("requesting VRE {}",completeName);
+		if (vreMap.containsKey(completeName))
+			return vreMap.get(completeName);
+		else 
+			return null;
+		
+	}
+	
+	private synchronized VRE putVRE(Item vreFolder) {
+		logger.trace("inserting VRE {}",vreFolder.getTitle());
+		if (vreMap.containsKey(vreFolder.getTitle())) throw new RuntimeException("something went wrong (vre already present in the map)");
+		else {
+			VRE toReturn = new VRE(vreFolder, repository.getRepository(), Constants.JCR_CREDENTIALS, node2Item, executor);
+			vreMap.put(vreFolder.getTitle(), toReturn);
+			return toReturn;
+		}
+		
+	}
+
+	public String retrieveGroupNameFromContext(String context) throws StorageHubException{
+		ContextBean bean = new ContextBean(context);
+		if (!bean.is(Type.VRE)) throw new BackendGenericError("the current scope is not a VRE");
+		String entireScopeName= bean.toString().replaceAll("^/(.*)/?$", "$1").replaceAll("/", "-");
+		return entireScopeName;
+	}
+	
+	
+	public synchronized VRE getVreFolderItemByGroupName(JackrabbitSession ses, String groupName, List<String> excludes ) throws RepositoryException, StorageHubException{
+		VRE vre = this.getVRE(groupName);
+		if (vre!=null) return vre;
+		else {
+			Node vreFolderNode = groupHandler.getFolderNodeRelatedToGroup(ses, groupName);
+			Item vreFolder = node2Item.getItem(vreFolderNode, excludes);
+			return this.putVRE(vreFolder);
+		}	
+	}
+
+	
+}

src/main/java/org/gcube/data/access/storagehub/handlers/vres/VREQueryRetriever.java

@@ -0,0 +1,274 @@
+package org.gcube.data.access.storagehub.handlers.vres;
+
+import java.util.ArrayList;
+import java.util.Calendar;
+import java.util.Collections;
+import java.util.HashMap;
+import java.util.LinkedList;
+import java.util.List;
+import java.util.Map;
+import java.util.concurrent.Callable;
+import java.util.stream.Collectors;
+
+import javax.jcr.Credentials;
+import javax.jcr.Node;
+import javax.jcr.NodeIterator;
+import javax.jcr.Property;
+import javax.jcr.Repository;
+import javax.jcr.RepositoryException;
+import javax.jcr.Session;
+import javax.jcr.observation.Event;
+import javax.jcr.observation.EventJournal;
+
+import org.gcube.common.storagehub.model.Excludes;
+import org.gcube.common.storagehub.model.exceptions.BackendGenericError;
+import org.gcube.common.storagehub.model.items.AbstractFileItem;
+import org.gcube.common.storagehub.model.items.FolderItem;
+import org.gcube.common.storagehub.model.items.Item;
+import org.gcube.data.access.storagehub.handlers.items.Node2ItemConverter;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
+
+public class VREQueryRetriever implements Callable<List<Item>> {
+
+	private static final Logger logger = LoggerFactory.getLogger(VREQueryRetriever.class); 
+
+	private static final int CACHE_DIMENSION = 50;
+
+	private Repository repository;
+	private Credentials credentials;
+	private Item vreFolder;
+	Map<String, Long> cachedMap = new HashMap<>(CACHE_DIMENSION);
+	
+	long lastTimestamp =0;
+
+	long doTime= 0;
+	boolean underRedo = false;
+	Node2ItemConverter node2Item;
+
+	private static int TIME_MEASURE = Calendar.MINUTE;
+	private static int VALUE_TIME_BEFORE = 30;
+
+
+	public VREQueryRetriever(Repository repository, Credentials credentials, Node2ItemConverter node2Item, Item vreFolder) {
+		super();
+		this.repository = repository;
+		this.credentials = credentials;
+		this.vreFolder = vreFolder;
+		this.node2Item = node2Item;
+	}
+
+	public List<Item> call() {
+		Session ses = null;
+		try {
+			ses = repository.login(credentials);
+			Calendar now = Calendar.getInstance();
+			now.add(TIME_MEASURE, -1*Math.abs(VALUE_TIME_BEFORE));
+			
+			if (doTime> now.getTimeInMillis() || underRedo) {
+				logger.debug("executing recents task for {} (cahced result)",vreFolder.getTitle());
+				return correctValues(ses, cachedMap);
+			}else {
+				logger.debug("executing recents task for {} (redoing it)",vreFolder.getTitle());
+				List<Item> toReturn = redo(ses);
+				doTime = System.currentTimeMillis();
+				return toReturn;
+			}
+		}catch (Exception e) {
+			logger.error("error preparing recents for folder {}", vreFolder.getTitle(),e);
+			return Collections.emptyList();
+		}finally{
+			if (ses!=null)
+				ses.logout();
+			logger.debug("recents task finished");
+		}
+	}
+
+	public synchronized List<Item> redo(Session ses) {
+		underRedo = true;
+		try {
+			Map<String, Long> tempCachedMap = new HashMap<>(cachedMap);
+			if (cachedMap.isEmpty()) 
+				init(ses, tempCachedMap);
+			else {
+				logger.debug("redoing recents for {}",vreFolder.getTitle());
+				update(ses, tempCachedMap);
+			} 
+			cachedMap = tempCachedMap;
+			return correctValues(ses, tempCachedMap);
+		}finally{
+			underRedo = false;
+		}
+	}
+
+
+	private List<Item> correctValues(Session ses, Map<String, Long> tempCachedMap){
+		logger.debug("preparing returning values for {}",vreFolder.getTitle());
+		long start = System.currentTimeMillis();
+		List<Map.Entry<String, Long>> list = new LinkedList<>(tempCachedMap.entrySet());
+		list.sort((c1, c2) -> c1.getValue().compareTo(c2.getValue())*-1);
+		if (list.size()>CACHE_DIMENSION) 
+			for (int index = CACHE_DIMENSION-1; index< list.size() ; index++) 
+				tempCachedMap.remove(list.get(index).getKey());
+
+		List<String> cachedIds = list.stream().map(m -> m.getKey()).collect(Collectors.toList());
+		if (cachedIds.size()>10)
+			cachedIds = cachedIds.subList(0, 10);
+
+		List<Item> result = new ArrayList<>(10); 
+
+		for (String id: cachedIds) {
+			try {
+				Item item = node2Item.getItem(id, ses, Excludes.EXCLUDE_ACCOUNTING);
+				if (item!=null)
+					result.add(item);
+				else logger.warn("item with id {} is null",id);
+			} catch (BackendGenericError | RepositoryException e) {	}
+		}
+
+		logger.debug("returning values prepared in {} for {}",System.currentTimeMillis()-start,vreFolder.getTitle());
+
+		return result;
+	}
+
+	private void insertItemInTheRightPlace(Item item, Map<String, Long> tempCachedMap) {
+		long lastModifiedTime = item.getLastModificationTime().getTimeInMillis();
+
+		if (tempCachedMap.size()<CACHE_DIMENSION || lastModifiedTime>Collections.min(tempCachedMap.values())) 
+			tempCachedMap.put(item.getId(), lastModifiedTime);
+		
+
+	}
+
+	private void init(Session ses,Map<String, Long> tempCachedMap){
+		try {
+			long start = System.currentTimeMillis();
+			lastTimestamp = System.currentTimeMillis();
+			Node vreFolderNode = ses.getNodeByIdentifier(vreFolder.getId());
+			logger.debug("starting visiting children for {}",vreFolder.getTitle());
+			visitChildren(vreFolderNode, tempCachedMap);
+			logger.debug("initializing recents for {} took {}",vreFolder.getTitle(),System.currentTimeMillis()-start);
+		} catch (Exception e) {
+			logger.error("error querying vre {}",vreFolder.getTitle(),e);
+			throw new RuntimeException(e);
+		}
+	}
+
+
+	private void update(Session ses, Map<String, Long> tempCachedMap) {
+		try {
+			long timestampToUse = lastTimestamp;
+			lastTimestamp = System.currentTimeMillis();
+
+			long start = System.currentTimeMillis();
+			final String[] types = { "nthl:workspaceLeafItem", "nthl:workspaceItem"};
+
+			EventJournal journalChanged = ses.getWorkspace().getObservationManager().getEventJournal(Event.PROPERTY_CHANGED^Event.NODE_REMOVED^Event.NODE_MOVED^Event.NODE_ADDED, vreFolder.getPath(), true, null, types);
+			journalChanged.skipTo(timestampToUse);
+
+			logger.debug("getting the journal took {}",System.currentTimeMillis()-start);
+
+			int events = 0;
+
+			//TODO: manage hidden nodes
+			while (journalChanged.hasNext()) {
+				events++;
+				Event event = journalChanged.nextEvent();
+				try {
+					switch(event.getType()) {
+
+					case Event.NODE_ADDED:
+						if (ses.nodeExists(event.getPath())) {
+							Node nodeAdded = ses.getNode(event.getPath());
+							if (nodeAdded.isNodeType("nthl:workspaceLeafItem")) {
+								logger.debug("node added event received with name {}", nodeAdded.getName());
+								Item item = node2Item.getItem(nodeAdded, Excludes.ALL);
+								if (tempCachedMap.get(event.getIdentifier())!=null)
+									tempCachedMap.remove(event.getIdentifier());
+								if (item.isHidden())
+									break;
+								insertItemInTheRightPlace(item,tempCachedMap);
+							}
+						}
+						break;
+
+					case Event.PROPERTY_CHANGED:
+						if (ses.propertyExists(event.getPath())) {
+							Property property = ses.getProperty(event.getPath());
+							if (property.getName().equalsIgnoreCase("jcr:lastModified")) {
+								logger.debug("event property changed on {} with value {} and parent {}",property.getName(), property.getValue().getString(), property.getParent().getPath());
+								String identifier = property.getParent().getIdentifier();
+								tempCachedMap.remove(identifier);
+								Item item = node2Item.getItem(property.getParent(), Excludes.ALL);
+								if (item.isHidden())
+									break;
+								insertItemInTheRightPlace(item, tempCachedMap);
+							}
+						}
+						break;
+					case Event.NODE_REMOVED:
+						logger.trace("node removed event received with type {}", event.getIdentifier());
+
+						if (tempCachedMap.get(event.getIdentifier())!=null && 
+								tempCachedMap.get(event.getIdentifier())<event.getDate())
+							tempCachedMap.remove(event.getIdentifier());
+						break;
+					case Event.NODE_MOVED:
+						Node nodeMoved = ses.getNode(event.getPath());
+						logger.trace("node moved event received with type {}", nodeMoved.getPrimaryNodeType());
+						if (nodeMoved.isNodeType("nthl:workspaceLeafItem")) {
+							logger.debug("event node moved on {} with path {}",nodeMoved.getName(), nodeMoved.getPath());
+							String identifier = nodeMoved.getIdentifier();
+							String nodePath = ses.getNode(identifier).getPath();
+							if (tempCachedMap.get(event.getIdentifier())!=null && 
+									!nodePath.startsWith(vreFolder.getPath()))
+								tempCachedMap.remove(event.getIdentifier());
+
+						}
+						break;
+					default:
+						break;
+					}
+
+				}catch (Exception e) {
+					logger.warn("error handling event {}",event.getType(),e);
+				}
+
+			}
+
+			logger.trace("retrieving event took {} with {} events",System.currentTimeMillis()-start, events);
+
+		} catch (Exception e) {
+			logger.error("error getting events for vre {}",vreFolder.getTitle(),e);
+			throw new RuntimeException(e);
+		}
+
+	}
+
+	private void visitChildren(Node node, Map<String, Long> tempCachedMap) throws Exception{
+		NodeIterator nodeIt = node.getNodes();
+		while(nodeIt.hasNext()) {
+			Node child = nodeIt.nextNode();
+			Item item = node2Item.getItem(child, Excludes.ALL);
+			if (item==null || item.isHidden()) continue;
+			if (item instanceof FolderItem) 
+				visitChildren(child,tempCachedMap);
+			else if(item instanceof AbstractFileItem)
+				insertItemInTheRightPlace(item,tempCachedMap);
+		}
+	}
+
+	/*	@Override
+	public void onEvent(EventIterator events) {
+		logger.trace("on event called");
+		while (events.hasNext()) {
+			Event event = events.nextEvent();
+			try {
+				logger.trace("new event received of type {} on node {}",event.getType(),event.getIdentifier());
+			} catch (RepositoryException e) {
+				logger.error("error reading event",e);
+			}
+		}
+	}*/
+
+}

src/main/java/org/gcube/data/access/storagehub/health/DefaultStorageCheck.java

@@ -0,0 +1,41 @@
+package org.gcube.data.access.storagehub.health;
+
+import org.gcube.common.health.api.HealthCheck;
+import org.gcube.common.health.api.ReadinessChecker;
+import org.gcube.common.health.api.response.HealthCheckResponse;
+import org.gcube.common.storagehub.model.items.nodes.PayloadBackend;
+import org.gcube.data.access.storagehub.handlers.plugins.StorageBackendHandler;
+import org.gcube.data.access.storagehub.storage.backend.impl.GcubeDefaultS3StorageBackendFactory;
+import org.gcube.data.access.storagehub.storage.backend.impl.S3Backend;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
+
+@ReadinessChecker
+public class DefaultStorageCheck implements HealthCheck{
+
+	private static Logger log = LoggerFactory.getLogger(DefaultStorageCheck.class);
+	
+	PayloadBackend defaultPayload = StorageBackendHandler.getDefaultPayloadForFolder(); 
+		
+	@Override
+	public String getName() {
+		return String.format("default storage (%s)",defaultPayload.getStorageName());
+	}
+
+	@Override
+	public HealthCheckResponse check() {
+		try {
+			GcubeDefaultS3StorageBackendFactory storageFactory =new GcubeDefaultS3StorageBackendFactory();
+			storageFactory.init();
+ 			if (((S3Backend)storageFactory.create(defaultPayload)).isAlive())
+				return HealthCheckResponse.builder(getName()).up().build();
+			else
+				return HealthCheckResponse.builder(getName()).down().error("error contacting storage").build();
+		} catch (Exception e) {
+			log.error("error checking defaultStorage",e);
+			return HealthCheckResponse.builder(getName()).down().error(e.getMessage()).build(); 
+		} 
+		
+	}
+
+}

src/main/java/org/gcube/data/access/storagehub/health/JCRRepositoryCheck.java

@@ -0,0 +1,35 @@
+package org.gcube.data.access.storagehub.health;
+
+import javax.jcr.LoginException;
+import javax.jcr.Session;
+
+import org.gcube.common.health.api.HealthCheck;
+import org.gcube.common.health.api.ReadinessChecker;
+import org.gcube.common.health.api.response.HealthCheckResponse;
+import org.gcube.data.access.storagehub.repository.StoragehubRepository;
+
+@ReadinessChecker
+public class JCRRepositoryCheck implements HealthCheck{
+	
+	
+	
+	
+	@Override
+	public String getName() {
+		return "Jackrabbit repository";
+	}
+
+	@Override
+	public HealthCheckResponse check() {
+		try {
+			Session session = StoragehubRepository.repository.getRepository().login();
+			if (session != null) session.logout();
+			return HealthCheckResponse.builder(getName()).up().build();
+		}catch (LoginException e) {	}
+		catch(Throwable ex) {
+			return HealthCheckResponse.builder(getName()).down().error(ex.getMessage()).build(); 
+		}
+		return HealthCheckResponse.builder(getName()).up().build();
+	}
+
+}