update

.classpath

@@ -14,6 +14,7 @@
 	<classpathentry kind="con" path="org.eclipse.m2e.MAVEN2_CLASSPATH_CONTAINER">
 		<attributes>
 			<attribute name="maven.pomderived" value="true"/>
+			<attribute name="org.eclipse.jst.component.dependency" value="/WEB-INF/lib"/>
 		</attributes>
 	</classpathentry>
 	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.8">

.settings/org.eclipse.jdt.core.prefs

@@ -1,8 +1,11 @@
 eclipse.preferences.version=1
+org.eclipse.jdt.core.compiler.codegen.inlineJsrBytecode=enabled
 org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.8
 org.eclipse.jdt.core.compiler.compliance=1.8
+org.eclipse.jdt.core.compiler.problem.assertIdentifier=error
 org.eclipse.jdt.core.compiler.problem.enablePreviewFeatures=disabled
+org.eclipse.jdt.core.compiler.problem.enumIdentifier=error
 org.eclipse.jdt.core.compiler.problem.forbiddenReference=warning
-org.eclipse.jdt.core.compiler.problem.reportPreviewFeatures=ignore
+org.eclipse.jdt.core.compiler.problem.reportPreviewFeatures=warning
 org.eclipse.jdt.core.compiler.release=disabled
 org.eclipse.jdt.core.compiler.source=1.8

.settings/org.eclipse.wst.common.component

@@ -1,5 +1,8 @@
 <?xml version="1.0" encoding="UTF-8"?><project-modules id="moduleCoreId" project-version="1.5.0">
-                                                                                                
+                                                                                                            
+    
+    
+    
     
     
     
@@ -23,7 +26,10 @@
     
     
     <wb-module deploy-name="storagehub">
-                                                                                                                                                                                                
+                                                                                                                                                                                                                        
+        
+        
+        
         
         
         
@@ -47,7 +53,10 @@
         
         
         <wb-resource deploy-path="/" source-path="/target/m2e-wtp/web-resources"/>
-                                                                                                                                                                                                
+                                                                                                                                                                                                                        
+        
+        
+        
         
         
         
@@ -71,7 +80,10 @@
         
         
         <wb-resource deploy-path="/" source-path="/src/main/webapp" tag="defaultRootSource"/>
-                                                                                                                                                                                                
+                                                                                                                                                                                                                        
+        
+        
+        
         
         
         
@@ -95,12 +107,17 @@
         
         
         <wb-resource deploy-path="/WEB-INF/classes" source-path="/src/main/resources"/>
+                                
+        
+        
         <wb-resource deploy-path="/WEB-INF/classes" source-path="/src/main/java"/>
-        <wb-resource deploy-path="/WEB-INF/classes" source-path="/src/test/java"/>
+        <dependent-module archiveName="common-authorization-3.0.0-SNAPSHOT.jar" deploy-path="/WEB-INF/lib" handle="module:/resource/authorization-common-library/authorization-common-library">
-        <dependent-module archiveName="storagehub-script-utils-1.0.0.jar" deploy-path="/WEB-INF/lib" handle="module:/resource/storagehub-scripting-util/storagehub-scripting-util">
             <dependency-type>uses</dependency-type>
         </dependent-module>
-                                                                                                                                                                                                
+                                                                                                                                                                                                                        
+        
+        
+        
         
         
         
@@ -124,7 +141,10 @@
         
         
         <property name="context-root" value="storagehub"/>
-                                                                                                                                                                                                
+                                                                                                                                                                                                                        
+        
+        
+        
         
         
         
@@ -148,7 +168,10 @@
         
         
         <property name="java-output-path" value="/storagehub-webapp_BRANCH/target/classes"/>
-                                                                                                                                                                                            
+                                                                                                                                                                                                                    
+    
+    
+    
     
     
     
@@ -172,7 +195,10 @@
     
     
     </wb-module>
-                                                                                            
+                                                                                                        
+
+
+
 
 
 

.settings/org.eclipse.wst.common.project.facet.core.xml

@@ -1,8 +1,8 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <faceted-project>
   <fixed facet="wst.jsdt.web"/>
-  <installed facet="java" version="1.8"/>
   <installed facet="jst.web" version="3.0"/>
   <installed facet="jst.jaxrs" version="2.0"/>
   <installed facet="wst.jsdt.web" version="1.0"/>
+  <installed facet="java" version="1.8"/>
 </faceted-project>

Dockerfile

@@ -8,5 +8,5 @@ FROM smartgears-distribution:4.0.0-java11-tomcat9
    COPY ./docker/container.ini /etc/
    RUN unzip /tomcat/webapps/storagehub.war -d /tomcat/webapps/storagehub
    RUN rm /tomcat/webapps/storagehub.war
-   COPY ./docker/storage-settings.properties /tomcat/webapps/storagehub/classes/META-INF
+   COPY ./docker/storage-settings.properties /tomcat/webapps/storagehub/WEB-INF/classes/
    RUN sed -i "s/{{adminId}}/$REPOUSER/g; s/{{adminPwd}}/$REPOPWD/g"  /tomcat/webapps/storagehub/WEB-INF/web.xml

docker-compose.yml

@@ -23,17 +23,16 @@ services:
          - '8081:8080' 
     minio:
        image: minio/minio
-       command: 
-          minio server minio_data:/data
-       environment:
-          - "MINIO_ACCESS_KEY=SHUBTEST"
-          - "MINIO_SECRET_KEY=wJalrXUtnFEMI/K7MDENG/bPxRfiCY"
        ports:
-          - '9000'
+         - "9000:9000"
+         - "9001:9001"
        volumes:
-          - 'minio_data:/data'
+         - minio_storage:/data
+       environment:
+         MINIO_ROOT_USER: SHUBTEST
+         MINIO_ROOT_PASSWORD: wJalrXUtnFEMI/K7MDENG/bPxRfiCY
+       command: server --console-address ":9001" /data
 
 volumes:
-  minio_data:
+  minio_storage: {}
-    driver: local
              

docker/logback.xml

@@ -1,44 +1,25 @@
-<configuration scan="true" debug="false">
+<configuration scan="true" debug="true">
 
-	<!-- <appender name="STDOUT" class="ch.qos.logback.core.ConsoleAppender"> -->
+	<appender name="STDOUT" class="ch.qos.logback.core.ConsoleAppender">
-	<!-- <encoder> -->
+	<encoder>Ï
-	<!-- <pattern>%d{HH:mm:ss.SSS} [%thread] %-5level %logger{36} - %msg%n</pattern> -->
+	<pattern>%d{HH:mm:ss.SSS} [%thread] %-5level %logger{36} - %msg%n</pattern>
-	<!-- </encoder> -->
+	</encoder>
-	<!-- </appender> -->
-
-
-	<!-- <root level="debug"> -->
-	<!-- <appender-ref ref="STDOUT" /> -->
-	<!-- </root> -->
-
-	<appender name="FILE"
-		class="ch.qos.logback.core.rolling.RollingFileAppender">
-		<file>/tomcat/logs/ghn.log</file>
-		<append>true</append>
-		<encoder>
-			<pattern>%d{HH:mm:ss.SSS} [%thread] %-5level %logger{0}: %msg%n
-			</pattern>
-		</encoder>
-		<rollingPolicy
-			class="ch.qos.logback.core.rolling.TimeBasedRollingPolicy">
-			<fileNamePattern>${LOGFILE}/ghn.%d{yyyy-MM-dd}.log</fileNamePattern>
-			<maxHistory>30</maxHistory>
-		</rollingPolicy>
 	</appender>
+
+
+	
+	<logger name="org.gcube" level="DEBUG" />
+	<logger name="org.gcube.smartgears" level="TRACE" />
+	<logger name="org.gcube.smartgears.handlers" level="TRACE"/>
+	<logger name="org.gcube.common.events" level="WARN" />
+	<logger name="org.gcube.data.publishing" level="ERROR" />
+	<logger name="org.gcube.documentstore" level="ERROR" />
+	<logger name="org.gcube.common.core.publisher.is.legacy" level="TRACE" />
+	<logger name="org.gcube.data.access" level="TRACE" />
 	
 	
-<!-- 	<logger name="org.gcube" level="DEBUG" /> -->
+	<root level="WARN">
-<!-- 	<logger name="org.gcube.smartgears" level="TRACE" /> -->
+          <appender-ref ref="STDOUT" />
-<!-- 	<logger name="org.gcube.smartgears.handlers" level="TRACE"/> -->
-<!-- 	<logger name="org.gcube.common.events" level="WARN" /> -->
-<!-- 	<logger name="org.gcube.data.publishing" level="ERROR" /> -->
-<!-- 	<logger name="org.gcube.documentstore" level="ERROR" /> -->
-<!-- 	<logger name="org.gcube.common.core.publisher.is.legacy" level="TRACE" /> -->
-<!-- 	<logger name="org.gcube.data.access" level="TRACE" /> -->
-	
-	
-	<root level="TRACE">
-          <appender-ref ref="FILE" />
     </root>
 
 </configuration>

docker/storage-settings.properties

@@ -1,10 +1,10 @@
 default.bucketName=storagehub-dev
 default.key=SHUBTEST
 default.secret=wJalrXUtnFEMI/K7MDENG/bPxRfiCY
-default.url=https://localhost:9000/ 
+default.url=http://minio:9000 
 default.createBucket=true
 volatile.bucketName=storagehub-volatile-dev
 volatile.key=SHUBTEST
 volatile.secret=wJalrXUtnFEMI/K7MDENG/bPxRfiCY
-volatile.url=https://localhost:9000/ 
+volatile.url=http://minio:9000 
 volatile.createBucket=true

pom.xml

@@ -1,29 +1,23 @@
 <project xmlns="http://maven.apache.org/POM/4.0.0"
 	xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
 	xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
-
 	<parent>
 		<artifactId>maven-parent</artifactId>
 		<groupId>org.gcube.tools</groupId>
 		<version>1.1.0</version>
 		<relativePath />
 	</parent>
-
 	<modelVersion>4.0.0</modelVersion>
 	<groupId>org.gcube.data.access</groupId>
 	<artifactId>storagehub</artifactId>
 	<version>1.5.0-SNAPSHOT</version>
 	<name>storagehub</name>
-
 	<scm>
 		<connection>scm:git:https://code-repo.d4science.org/gCubeSystem/storagehub.git</connection>
 		<developerConnection>scm:git:https://code-repo.d4science.org/gCubeSystem/storagehub.git</developerConnection>
 		<url>https://code-repo.d4science.org/gCubeSystem/storagehub</url>
 	</scm>
-
-
 	<packaging>war</packaging>
-
 	<properties>
 		<webappDirectory>${project.basedir}/src/main/webapp/WEB-INF</webappDirectory>
 		<jackrabbit.version>2.20.7</jackrabbit.version>
@@ -37,10 +31,9 @@
 		<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
 		<project.reporting.outputEncoding>UTF-8</project.reporting.outputEncoding>
 		<enunciate.version>2.14.0</enunciate.version>
-		<maven.compiler.target>1.8</maven.compiler.target>
+		<!-- <maven.compiler.source>11</maven.compiler.source>
-		<maven.compiler.source>1.8</maven.compiler.source>
+		<maven.compiler.target>11</maven.compiler.target> -->
 	</properties>
-
 	<dependencyManagement>
 		<dependencies>
 			<dependency>
@@ -57,95 +50,73 @@
 			</dependency>
 		</dependencies>
 		<!-- https://mvnrepository.com/artifact/org.apache.tika/tika-parsers -->
-
-
 	</dependencyManagement>
-
 	<dependencies>
-
-
-
 		<dependency>
 			<groupId>org.aspectj</groupId>
 			<artifactId>aspectjrt</artifactId>
 		</dependency>
-
 		<dependency>
 			<groupId>org.gcube.core</groupId>
 			<artifactId>common-smartgears</artifactId>
 		</dependency>
-
 		<dependency>
 			<groupId>org.gcube.core</groupId>
 			<artifactId>common-smartgears-app</artifactId>
 		</dependency>
-
 		<dependency>
 			<groupId>org.gcube.common</groupId>
 			<artifactId>authorization-control-library</artifactId>
 		</dependency>
-
 		<dependency>
 			<groupId>org.gcube.common</groupId>
 			<artifactId>common-authorization</artifactId>
 		</dependency>
-
 		<dependency>
 			<groupId>org.gcube.core</groupId>
 			<artifactId>common-encryption</artifactId>
 		</dependency>
-
 		<dependency>
 			<groupId>org.gcube.core</groupId>
 			<artifactId>common-scope-maps</artifactId>
 		</dependency>
-
 		<dependency>
 			<groupId>org.gcube.core</groupId>
 			<artifactId>common-scope</artifactId>
 		</dependency>
-
 		<dependency>
 			<groupId>org.gcube.common</groupId>
 			<artifactId>storagehub-model</artifactId>
 		</dependency>
-
 		<dependency>
 			<groupId>org.gcube.data.access</groupId>
 			<artifactId>storagehub-script-utils</artifactId>
 			<version>[1.0.0-SNAPSHOT,2.0.0)</version>
 		</dependency>
-
 		<dependency>
 			<groupId>org.projectlombok</groupId>
 			<artifactId>lombok</artifactId>
 		</dependency>
-
 		<dependency>
 			<groupId>com.itextpdf</groupId>
 			<artifactId>itextpdf</artifactId>
 			<version>5.5.13.2</version>
 		</dependency>
-
 		<!-- https://mvnrepository.com/artifact/org.bouncycastle/bcprov-jdk15on -->
 		<dependency>
 			<groupId>org.bouncycastle</groupId>
 			<artifactId>bcprov-jdk15on</artifactId>
 			<version>1.62</version>
 		</dependency>
-
 		<dependency>
 			<groupId>org.slf4j</groupId>
 			<artifactId>slf4j-api</artifactId>
 		</dependency>
-
 		<dependency>
 			<groupId>org.gcube.common</groupId>
 			<artifactId>gxJRS</artifactId>
 		</dependency>
-
 		<!-- JCR dependencies -->
-
 		<dependency>
 			<groupId>javax.jcr</groupId>
 			<artifactId>jcr</artifactId>
@@ -163,26 +134,21 @@
 		</dependency>
 		<!-- <dependency> <groupId>org.apache.jackrabbit</groupId> <artifactId>jackrabbit-jcr-server</artifactId> 
 			<version>${jackrabbit.version}</version> </dependency> -->
-
 		<dependency>
 			<groupId>com.fasterxml.jackson.core</groupId>
 			<artifactId>jackson-annotations</artifactId>
 			<version>${jackson.version}</version>
 		</dependency>
-
 		<dependency>
 			<groupId>com.fasterxml.jackson.core</groupId>
 			<artifactId>jackson-core</artifactId>
 			<version>${jackson.version}</version>
 		</dependency>
-
 		<dependency>
 			<groupId>com.fasterxml.jackson.core</groupId>
 			<artifactId>jackson-databind</artifactId>
 			<version>${jackson.version}</version>
 		</dependency>
-
-
 		<!-- https://mvnrepository.com/artifact/org.apache.tika/tika-core -->
 		<dependency>
 			<groupId>org.apache.tika</groupId>
@@ -194,58 +160,44 @@
 			<artifactId>tika-parsers-standard-package</artifactId>
 			<version>${tika.version}</version>
 		</dependency>
-		<dependency>
-			<groupId>org.apache.tika</groupId>
-			<artifactId>tika-parser-microsoft-module</artifactId>
-			<version>${tika.version}</version>
-		</dependency>
-
 		<!-- needed to manage strange image types -->
 		<dependency>
 			<groupId>com.twelvemonkeys.imageio</groupId>
 			<artifactId>imageio-jpeg</artifactId>
 			<version>3.3.2</version>
 		</dependency>
-
 		<dependency>
 			<groupId>com.twelvemonkeys.imageio</groupId>
 			<artifactId>imageio-bmp</artifactId>
 			<version>3.3.2</version>
 		</dependency>
-
 		<dependency>
 			<groupId>com.twelvemonkeys.imageio</groupId>
 			<artifactId>imageio-core</artifactId>
 			<version>3.3.2</version>
 		</dependency>
-
-
 		<!-- jersey & weld -->
 		<dependency>
 			<groupId>javax.servlet</groupId>
 			<artifactId>javax.servlet-api</artifactId>
 			<version>3.0.1</version>
 		</dependency>
-
 		<!-- https://mvnrepository.com/artifact/javax.interceptor/javax.interceptor-api -->
 		<dependency>
 			<groupId>javax.interceptor</groupId>
 			<artifactId>javax.interceptor-api</artifactId>
 			<version>1.2.2</version>
 		</dependency>
-
 		<!-- https://mvnrepository.com/artifact/javax.enterprise/cdi-api -->
 		<dependency>
 			<groupId>javax.enterprise</groupId>
 			<artifactId>cdi-api</artifactId>
 			<version>2.0</version>
 		</dependency>
-
 		<dependency>
 			<groupId>javax.ws.rs</groupId>
 			<artifactId>javax.ws.rs-api</artifactId>
 		</dependency>
-
 		<dependency>
 			<groupId>org.glassfish.jersey.containers</groupId>
 			<artifactId>jersey-container-servlet</artifactId>
@@ -254,14 +206,12 @@
 			<groupId>org.glassfish.jersey.containers</groupId>
 			<artifactId>jersey-container-servlet-core</artifactId>
 		</dependency>
-
 		<!-- https://mvnrepository.com/artifact/org.glassfish.jersey.inject/jersey-hk2 -->
 		<dependency>
 			<groupId>org.glassfish.jersey.inject</groupId>
 			<artifactId>jersey-hk2</artifactId>
 			<version>2.30.1</version>
 		</dependency>
-
 		<dependency>
 			<groupId>org.glassfish.jersey.core</groupId>
 			<artifactId>jersey-server</artifactId>
@@ -279,74 +229,60 @@
 			<artifactId>weld-servlet-core</artifactId>
 			<version>3.1.0.Final</version>
 		</dependency>
-
 		<!-- https://mvnrepository.com/artifact/org.jboss/jandex -->
 		<dependency>
 			<groupId>org.jboss</groupId>
 			<artifactId>jandex</artifactId>
 			<version>2.2.2.Final</version>
 		</dependency>
-
 		<dependency>
 			<groupId>javax.servlet</groupId>
 			<artifactId>javax.servlet-api</artifactId>
 			<version>3.0.1</version>
 		</dependency>
-
 		<!-- https://mvnrepository.com/artifact/org.glassfish.jersey.core/jersey-common -->
 		<dependency>
 			<groupId>org.glassfish.jersey.core</groupId>
 			<artifactId>jersey-common</artifactId>
 		</dependency>
-
 		<dependency>
 			<groupId>org.glassfish.jersey.media</groupId>
 			<artifactId>jersey-media-json-jackson</artifactId>
 		</dependency>
-
 		<dependency>
 			<groupId>org.glassfish.jersey.media</groupId>
 			<artifactId>jersey-media-multipart</artifactId>
 		</dependency>
-
 		<dependency>
 			<groupId>postgresql</groupId>
 			<artifactId>postgresql</artifactId>
 			<version>9.1-901.jdbc4</version>
 			<scope>runtime</scope>
 		</dependency>
-
-
 		<dependency>
 			<groupId>org.reflections</groupId>
 			<artifactId>reflections</artifactId>
 		</dependency>
-
 		<dependency>
 			<groupId>com.google.guava</groupId>
 			<artifactId>guava</artifactId>
 			<version>16.0</version>
 		</dependency>
-
 		<dependency>
 			<groupId>org.apache.commons</groupId>
 			<artifactId>commons-compress</artifactId>
-			<version>1.17</version>
+			<version>1.22</version>
 		</dependency>
-
 		<dependency>
 			<groupId>org.tukaani</groupId>
 			<artifactId>xz</artifactId>
 			<version>1.5</version>
 		</dependency>
-
-
 		<dependency>
 			<groupId>org.glassfish.jersey.test-framework.providers</groupId>
 			<artifactId>jersey-test-framework-provider-simple</artifactId>
 			<scope>test</scope>
 		</dependency>
-
 		<dependency>
 			<groupId>org.apache.derby</groupId>
 			<artifactId>derby</artifactId>
@@ -359,30 +295,30 @@
 			<version>10.8.2.2</version>
 			<scope>test</scope>
 		</dependency>
-
-
 		<!-- https://mvnrepository.com/artifact/com.google.code.gson/gson -->
 		<dependency>
 			<groupId>com.google.code.gson</groupId>
 			<artifactId>gson</artifactId>
 			<version>2.7</version>
 		</dependency>
-
-
 		<dependency>
 			<groupId>com.vlkan.rfos</groupId>
 			<artifactId>rotating-fos</artifactId>
 			<version>0.9.2</version>
 		</dependency>
-
-
 		<dependency>
 			<groupId>org.slf4j</groupId>
 			<artifactId>jul-to-slf4j</artifactId>
 			<version>${slf4j.version}</version>
 		</dependency>
-
+		<!-- https://mvnrepository.com/artifact/org.apache.logging.log4j/log4j-to-slf4j -->
-		<!-- enunciate deps -->
+		<!-- https://mvnrepository.com/artifact/org.slf4j/log4j-over-slf4j -->
+		<dependency>
+			<groupId>org.slf4j</groupId>
+			<artifactId>log4j-over-slf4j</artifactId>
+			<version>2.0.7</version>
+		</dependency>
+		<!-- enunciate deps
 		<dependency>
 			<groupId>com.webcohesion.enunciate</groupId>
 			<artifactId>enunciate-core-annotations</artifactId>
@@ -394,35 +330,29 @@
 			<artifactId>enunciate-rt-util</artifactId>
 			<version>${enunciate.version}</version>
 			<scope>provided</scope>
-		</dependency>
+		</dependency>  -->
-
-
 		<!-- Storage dependencies -->
 		<dependency>
 			<groupId>org.gcube.contentmanagement</groupId>
 			<artifactId>storage-manager-core</artifactId>
 			<version>[4.0.0-SNAPSHOT,5.0.0-SNAPSHOT)</version>
 		</dependency>
-
 		<dependency>
 			<groupId>org.gcube.contentmanagement</groupId>
 			<artifactId>storage-manager-wrapper</artifactId>
 			<version>[4.0.0-SNAPSHOT,5.0.0-SNAPSHOT)</version>
 		</dependency>
-
 		<!-- https://mvnrepository.com/artifact/io.minio/minio -->
 		<dependency>
 			<groupId>io.minio</groupId>
 			<artifactId>minio</artifactId>
 			<version>8.3.3</version>
 		</dependency>
-
 		<dependency>
 			<groupId>org.gcube.common</groupId>
 			<artifactId>storagehub-client-library</artifactId>
 			<scope>test</scope>
 		</dependency>
-
 		<dependency>
 			<groupId>org.testcontainers</groupId>
 			<artifactId>testcontainers</artifactId>
@@ -436,15 +366,11 @@
 			<version>4.13.2</version>
 			<scope>test</scope>
 		</dependency>
-
 		<dependency>
 			<groupId>ch.qos.logback</groupId>
 			<artifactId>logback-classic</artifactId>
 			<scope>test</scope>
 		</dependency>
-
-
-
 	</dependencies>
 	<build>
 		<finalName>${project.artifactId}</finalName>
@@ -512,14 +438,12 @@
 					<failOnMissingWebXml>false</failOnMissingWebXml>
 				</configuration>
 			</plugin>
-
+			<!-- Enunciate Maven plugin
-			<!-- Enunciate Maven plugin -->
 			<plugin>
 				<groupId>com.webcohesion.enunciate</groupId>
 				<artifactId>enunciate-maven-plugin</artifactId>
 				<version>${enunciate.version}</version>
-				<configuration>
+				<configuration></configuration>
-				</configuration>
 				<executions>
 					<execution>
 						<id>assemble</id>
@@ -528,8 +452,7 @@
 						</goals>
 					</execution>
 				</executions>
-			</plugin>
+			</plugin>  -->
-
 			<!-- Copy Enunciate Documentation from your-application/docs to your-application.war -->
 			<plugin>
 				<groupId>org.apache.maven.plugins</groupId>
@@ -556,5 +479,4 @@
 			</plugin>
 		</plugins>
 	</build>
-
 </project>

src/main/java/org/gcube/data/access/storagehub/handlers/PublicLinkHandler.java

@@ -17,7 +17,6 @@ import org.gcube.common.storagehub.model.exceptions.StorageHubException;
 import org.gcube.data.access.storagehub.types.LinkType;
 import org.gcube.data.access.storagehub.types.PublicLink;
 import org.gcube.smartgears.ContextProvider;
-import org.gcube.smartgears.provider.ProviderFactory;
 
 @Singleton
 public class PublicLinkHandler {

src/main/java/org/gcube/data/access/storagehub/handlers/VersionHandler.java

@@ -15,8 +15,6 @@ import javax.jcr.version.VersionManager;
 
 import org.apache.jackrabbit.JcrConstants;
 import org.gcube.common.storagehub.model.NodeConstants;
-import org.gcube.common.storagehub.model.exceptions.BackendGenericError;
-import org.gcube.common.storagehub.model.exceptions.StorageHubException;
 import org.slf4j.Logger;
 import org.slf4j.LoggerFactory;
 

src/main/java/org/gcube/data/access/storagehub/handlers/content/ContentHandlerFactory.java

@@ -42,9 +42,9 @@ public class ContentHandlerFactory {
 	public ContentHandler create(String mimetype) throws Exception{
 		Class<? extends ContentHandler> handlerClass = handlerMap.get(mimetype);
 		if (handlerClass!=null) 
-			return handlerClass.newInstance();
+			return handlerClass.getDeclaredConstructor().newInstance();
 		else 
-			return defaultHandler.newInstance();
+			return defaultHandler.getDeclaredConstructor().newInstance();
 	}
 	
 }

src/main/java/org/gcube/data/access/storagehub/handlers/items/ItemHandler.java

@@ -179,6 +179,7 @@ public class ItemHandler {
 			ArchiveEntry entry;
 			while ((entry = input.getNextEntry()) != null) {
 				String entirePath = entry.getName();
+				log.debug("reading new entry ------> ", entirePath);
 				if (entry.isDirectory()) {
 					log.debug("creating directory with entire path {} ", entirePath);
 					createPath(entirePath, directoryNodeMap, parentDirectoryNode, params.getSession(), params.getUser());
@@ -201,7 +202,7 @@ public class ItemHandler {
 							fileNode = createFileItemInternally(params.getSession(), parentNode, input, name, "",fileDetail, params.getUser(), false);
 						}
 						fileNodes.add(fileNode);
-					}catch(Exception e) {
+					}catch(Throwable e) {
 						log.warn("error getting file {}",entry.getName(),e);
 					}
 				}
@@ -394,7 +395,7 @@ public class ItemHandler {
 			handler.getContent().setPayloadBackend(info.getPayloadBackend());
 			log.debug("UPLOAD: content payload seta as {} ", handler.getContent().getPayloadBackend());
 			return handler;
-		}catch (Exception e) {
+		}catch (Throwable e) {
 			throw new BackendGenericError(e);
 		}
 

src/main/java/org/gcube/data/access/storagehub/health/DefaultStorageCheck.java

@@ -7,13 +7,16 @@ import org.gcube.common.storagehub.model.items.nodes.PayloadBackend;
 import org.gcube.data.access.storagehub.handlers.plugins.StorageBackendHandler;
 import org.gcube.data.access.storagehub.storage.backend.impl.GcubeMinIoStorageBackendFactory;
 import org.gcube.data.access.storagehub.storage.backend.impl.S3Backend;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
 
 @ReadinessChecker
 public class DefaultStorageCheck implements HealthCheck{
 
+	private static Logger log = LoggerFactory.getLogger(DefaultStorageCheck.class);
 	
 	PayloadBackend defaultPayload = StorageBackendHandler.getDefaultPayloadForFolder(); 
-	
+		
 	@Override
 	public String getName() {
 		return String.format("default storage (%s)",defaultPayload.getStorageName());
@@ -22,11 +25,14 @@ public class DefaultStorageCheck implements HealthCheck{
 	@Override
 	public HealthCheckResponse check() {
 		try {
-			if (((S3Backend)new GcubeMinIoStorageBackendFactory().create(defaultPayload)).isAlive())
+			GcubeMinIoStorageBackendFactory storageFactory =new GcubeMinIoStorageBackendFactory();
+			storageFactory.init();
+ 			if (((S3Backend)storageFactory.create(defaultPayload)).isAlive())
 				return HealthCheckResponse.builder(getName()).up().build();
 			else
 				return HealthCheckResponse.builder(getName()).down().withMessage("error contacting storage").build();
 		} catch (Exception e) {
+			log.error("error checking defaultStorage",e);
 			return HealthCheckResponse.builder(getName()).down().withMessage(e.getMessage()).build(); 
 		} 
 		

src/main/java/org/gcube/data/access/storagehub/services/admin/ScriptManager.java

@@ -151,7 +151,7 @@ public class ScriptManager {
 			}
 
 			if (AbstractScript.class.isAssignableFrom(clazz)) {
-				AbstractScript scriptInstance = (AbstractScript) clazz.newInstance();
+				AbstractScript scriptInstance = (AbstractScript) clazz.getDeclaredConstructor().newInstance();
 
 				ApplicationContext appContext = ContextProvider.get();
 				String serverHost = appContext.container().configuration().hostname();

src/main/java/org/gcube/data/access/storagehub/storage/backend/impl/GcubeMinIoStorageBackendFactory.java

@@ -54,8 +54,9 @@ public class GcubeMinIoStorageBackendFactory implements StorageBackendFactory {
             Map<String, Object> params = new HashMap<String, Object>();
                 
             
-            prop.forEach((k,v) -> { if (k.toString().startsWith(PROP_PREFIX)) params.put(k.toString().replace(PROP_PREFIX, ""), v.toString());});
+            prop.forEach((k,v) -> { if (k.toString().startsWith(PROP_PREFIX)) params.put(k.toString().replace(PROP_PREFIX, ""), v);});
-    		return new Metadata(params);
+    		
+            return new Metadata(params);
     
         } catch (IOException ex) {
             throw new RuntimeException("error initializing MinIO", ex);

src/main/java/org/gcube/data/access/storagehub/storage/backend/impl/S3Backend.java

@@ -6,7 +6,6 @@ import java.util.HashMap;
 import java.util.Map;
 import java.util.function.Function;
 
-import org.gcube.common.security.providers.SecretManagerProvider;
 import org.gcube.common.storagehub.model.exceptions.StorageIdNotFoundException;
 import org.gcube.common.storagehub.model.items.nodes.Content;
 import org.gcube.common.storagehub.model.items.nodes.PayloadBackend;
@@ -50,16 +49,20 @@ public class S3Backend extends StorageBackend{
 		String accessKey = (String)parameters.get("key");
 		String secret = (String)parameters.get("secret");
 		String url = (String)parameters.get("url");
-		boolean createBucket = Boolean.getBoolean((String)parameters.get("createBucket"));
+		boolean createBucket = Boolean.valueOf((String)parameters.get("createBucket"));
 
+		log.debug("parameters are: backetName = {}, url = {}, createBucket = {}",this.bucketName, url, createBucket);
+		
 		try {
 			client =
 					MinioClient.builder()
 					.endpoint(url)
 					.credentials(accessKey, secret)
 					.build();
-			if (createBucket && !client.bucketExists(BucketExistsArgs.builder().bucket(this.bucketName).build())) 
+			if (createBucket && !client.bucketExists(BucketExistsArgs.builder().bucket(this.bucketName).build())) { 
 				client.makeBucket(MakeBucketArgs.builder().bucket(this.bucketName).build());
+				log.debug("bucket {} created",this.bucketName);
+			}
 
 		} catch (Exception e) {
 			log.error("error initializing s3",e);
@@ -67,6 +70,19 @@ public class S3Backend extends StorageBackend{
 		} 
 	}
 
+	public boolean isAlive() {
+		
+		boolean toReturn = true;
+		try {
+			client.bucketExists(BucketExistsArgs.builder().bucket(this.bucketName).build());
+		}catch (Exception e) {
+			log.error("error checking aliveness",e);
+			toReturn = false;
+		}
+		log.debug("the S3 backend is {} Alive",toReturn?"":"not");
+		return toReturn;
+	}
+	
 	@Override
 	public MetaInfo onCopy(Content content, String newParentPath, String newName) {
 

src/main/resources/init/NodeType.cnd

@@ -75,7 +75,7 @@
 [nthl:readersSet] > nt:base
   + * (nthl:accountingEntryRead)	 		
    	
-[nthl:workspaceItem] > mix:referenceable, mix:title, mix:lastModified, nt:hierarchyNode, mix:lockable, mix:shareable
+[nthl:workspaceItem] > mix:referenceable, mix:title, mix:lastModified, nt:hierarchyNode, mix:lockable
   - hl:portalLogin (String)
   - hl:lastAction (String) mandatory
   -	hl:oldRemotePath (String)

src/test/java/org/gcube/data/access/fs/container/CreateUsers.java

@@ -6,6 +6,7 @@ import java.net.URL;
 
 import org.gcube.common.security.providers.SecretManagerProvider;
 import org.gcube.common.security.secrets.AccessTokenSecret;
+import org.gcube.common.security.secrets.UmaTokenSecret;
 import org.gcube.common.storagehub.client.dsl.StorageHubClient;
 import org.junit.Test;
 import org.slf4j.Logger;
@@ -37,7 +38,7 @@ public class CreateUsers {
 	}
 	
 	public void setTokenAndScope() {
-		AccessTokenSecret secret = new AccessTokenSecret("eyJhbGciOiJSUzI1NiIsInR5cCIgOiAiSldUIiwia2lkIiA6ICJSSklZNEpoNF9qdDdvNmREY0NlUDFfS1l0akcxVExXVW9oMkQ2Tzk1bFNBIn0.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.SGuGXnY63WJ45tdypywaopO--FCxY6ZWAX74MGVw_zdNMMQI5zgtGfhZQewFWQ6HhVINDStXqvdSDluhF9JwFXCUGvxB2BipfKQYsAQnm3I4K3kgMl26kuQIL5Im-apw2XWvImTgLshX1AzpyqzFR1Jpf_p65GCMpcHLEwo_nTGLkrZNtfRdtqakZ8S8lowGaV2J2mNf4AHhtARSLJF3GqwynF5pPUXR2iOMUrjw_FLnIuPMfAjk_jHMeYKIxXNBLsoEpELju3pr2gEkv1ZRH9bZkyg7_3hW4mGzxq_Ea9w1FBVJOlkp6vypuISLNyJZcVOnBa4Dg1KRxxlp3aZ6vA");
+		UmaTokenSecret secret = new UmaTokenSecret("eyJhbGciOiJSUzI1NiIsInR5cCIgOiAiSldUIiwia2lkIiA6ICJSSklZNEpoNF9qdDdvNmREY0NlUDFfS1l0akcxVExXVW9oMkQ2Tzk1bFNBIn0.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.SGuGXnY63WJ45tdypywaopO--FCxY6ZWAX74MGVw_zdNMMQI5zgtGfhZQewFWQ6HhVINDStXqvdSDluhF9JwFXCUGvxB2BipfKQYsAQnm3I4K3kgMl26kuQIL5Im-apw2XWvImTgLshX1AzpyqzFR1Jpf_p65GCMpcHLEwo_nTGLkrZNtfRdtqakZ8S8lowGaV2J2mNf4AHhtARSLJF3GqwynF5pPUXR2iOMUrjw_FLnIuPMfAjk_jHMeYKIxXNBLsoEpELju3pr2gEkv1ZRH9bZkyg7_3hW4mGzxq_Ea9w1FBVJOlkp6vypuISLNyJZcVOnBa4Dg1KRxxlp3aZ6vA");
 		SecretManagerProvider.instance.set(secret);
 	}
 	

src/test/java/org/gcube/data/access/fs/external/CreateUsers.java

@@ -30,8 +30,8 @@ public class CreateUsers {
 	
 	private static Logger log = LoggerFactory.getLogger(CreateUsers.class);
 	
-	private String user ="lucio.lelii";
+	private String user ="pippo.test";
-	private String user2 ="pippo.test";
+	private String user2 ="lucio.lelii";
 	private String vreWA ="vre-write-all";
 	private String vreRO ="vre-read-only";
 	private String vreWO ="vre-write-owner";
@@ -53,6 +53,14 @@ public class CreateUsers {
 		SecretManagerProvider.instance.set(secret);  
 	}
 	
+	@Test
+	public void initialiseEnvironment() throws Exception {
+		this.createUser();
+		this.createAndAddUserToVREs();
+		this.createUser2AndAddItToVres();
+	}
+	
+	
 	@Test
 	public void createAccountforManging() throws Exception{
 		client.createUserAccount("service-account-sg4-test-client");
@@ -72,6 +80,15 @@ public class CreateUsers {
 		System.out.println(SecretManagerProvider.instance.get().getHTTPAuthorizationHeaders());  
 	}
 	
+	@Test
+	public void getFolderACLsOnrROVRE() throws Exception {
+		client.impersonate(user);
+		FolderContainer vre = (FolderContainer) client.getVREFolders().getContainers().stream().filter(f -> f.get().getTitle().equals(vreWA)).findFirst().get();
+		FolderContainer folder = (FolderContainer) vre.list().getContainers().stream().findFirst().get();
+		System.out.println(folder.get().getTitle()+"   "+folder.getAcls());
+	}
+	
+	
 	@Test
 	public void createUser() throws Exception{
 		client.createUserAccount(user);
@@ -85,7 +102,7 @@ public class CreateUsers {
 	}
 	
 	@Test
-	public void addUserToVREs() throws Exception{
+	public void createAndAddUserToVREs() throws Exception{
 		client.getVreFolderManager(vreWA).createVRE(AccessType.WRITE_ALL, user);
 		client.getVreFolderManager(vreWA).setAdmin(user);
 		client.getVreFolderManager(vreRO).createVRE(AccessType.READ_ONLY, user);
@@ -95,7 +112,7 @@ public class CreateUsers {
 	}
 		
 	@Test
-	public void createUser2() throws Exception{
+	public void createUser2AndAddItToVres() throws Exception{
 		client.impersonate(user);
 		client.createUserAccount(user2);
 		client.getVreFolderManager(vreWA).addUser(user2);

src/test/resources/logback-test.xml

@@ -5,7 +5,7 @@
         </encoder>
     </appender>
 
-    <root level="trace">
+    <root level="TRACE">
         <appender-ref ref="STDOUT"/>
     </root>