ref 11724: SAI - Update to StorageHUB

https://support.d4science.org/issues/11724

Updated to StorageHub 

git-svn-id: https://svn.d4science.research-infrastructures.eu/gcube/trunk/portlets/user/statistical-algorithms-importer@171353 82a268e6-3cf1-43bd-a215-b396298e98cf

src/main/java/org/gcube/portlets/user/statisticalalgorithmsimporter/server/StatAlgoImporterServiceImpl.java

@@ -729,10 +729,11 @@ public class StatAlgoImporterServiceImpl extends RemoteServiceServlet implements
 				if (saiDescriptor != null && saiDescriptor.getPoolManagerConfig() != null
 						&& saiDescriptor.getPoolManagerConfig().isEnable()) {
 					logger.info("Deploy On PoolManager");
-					logger.debug("CodeJarAdminCopy for PoolManager: " + deploySave.getCodeJarAdminCopy());
+					ItemDescription codeJar = project.getProjectTarget().getProjectDeploy().getCodeJar();
+					logger.debug("CodeJarAdminCopy for PoolManager: " + codeJar);
 					DataMinerPoolManager poolManager = new DataMinerPoolManager(serviceCredentials);
 					String operationId = poolManager.deployAlgorithm(project, deploySave.getInfoData(),
-							deploySave.getCodeJarAdminCopy());
+							codeJar);
 					logger.info("Deploy operationId: " + operationId);
 					return operationId;
 				} else {

src/main/java/org/gcube/portlets/user/statisticalalgorithmsimporter/server/file/CodeReader.java

@@ -14,7 +14,7 @@ import org.gcube.portlets.user.statisticalalgorithmsimporter.shared.exception.St
 import org.gcube.portlets.user.statisticalalgorithmsimporter.shared.project.MainCode;
 import org.gcube.portlets.user.statisticalalgorithmsimporter.shared.project.Project;
 import org.gcube.portlets.user.statisticalalgorithmsimporter.shared.project.ProjectSupportBashEdit;
-import org.gcube.portlets.user.statisticalalgorithmsimporter.shared.project.ProjectSupportBlackBox;
+//import org.gcube.portlets.user.statisticalalgorithmsimporter.shared.project.ProjectSupportBlackBox;
 import org.gcube.portlets.user.statisticalalgorithmsimporter.shared.project.ProjectSupportREdit;
 import org.slf4j.Logger;
 import org.slf4j.LoggerFactory;
@@ -88,7 +88,10 @@ public class CodeReader {
 						 * TODO
 						 * 
 						 * Check how if open a project after another already open if we write this code we create a lock
-						 * this create a lock on workspace when we save the project
+						 * this create a lock on workspace when we save the project.
+						 * The Workspace does not have a fix for this issue, 
+						 * so I add this exception how workaround.
+						 *
 						 * 
 						 * if (project.getProjectConfig().getProjectSupport()
 						 * instanceof ProjectSupportBlackBox) {

src/main/java/org/gcube/portlets/user/statisticalalgorithmsimporter/server/generator/AlgorithmGenerator.java

@@ -491,6 +491,7 @@ public class AlgorithmGenerator {
 		}
 	}
 
+	//TODO
 	private String retrieveMainScriptRelativePath() {
 		logger.debug("ProjectInfo: " + project);
 		String projectPath = project.getProjectFolder().getFolder().getPath();

src/main/java/org/gcube/portlets/user/statisticalalgorithmsimporter/server/generator/ProjectBuilder.java

@@ -637,7 +637,7 @@ public class ProjectBuilder {
 
 		FilesStorage filesStorage = new FilesStorage();
 		ItemDescription codeJarItemDescription;
-		;
+		
 
 		try {
 			codeJarItemDescription = filesStorage.createItemOnWorkspace(serviceCredentials.getUserName(),

src/main/java/org/gcube/portlets/user/statisticalalgorithmsimporter/server/storage/DeploySave.java

@@ -1,14 +1,5 @@
 package org.gcube.portlets.user.statisticalalgorithmsimporter.server.storage;
 
-import java.io.IOException;
-import java.io.InputStream;
-import java.nio.charset.Charset;
-import java.nio.file.Files;
-import java.nio.file.Path;
-import java.nio.file.StandardOpenOption;
-import java.util.Arrays;
-import java.util.List;
-
 import org.gcube.portlets.user.statisticalalgorithmsimporter.server.util.ServiceCredentials;
 import org.gcube.portlets.user.statisticalalgorithmsimporter.shared.exception.StatAlgoImporterServiceException;
 import org.gcube.portlets.user.statisticalalgorithmsimporter.shared.info.InfoData;
@@ -24,43 +15,43 @@ import org.slf4j.LoggerFactory;
  *
  */
 public class DeploySave {
-	private static final String ADMIN_USER = "statistical.manager";
+	//private static final String ADMIN_USER = "statistical.manager";
-	private static final String CODE_JAR_MIMETYPE = "application/java-archive";
+	//private static final String CODE_JAR_MIMETYPE = "application/java-archive";
-	private static final String CODE_JAR_DESCRIPTION = "Statistical Algorithm Jar";
+	//private static final String CODE_JAR_DESCRIPTION = "Statistical Algorithm Jar";
-	private static final String DESTINATION_FOLDER = "DataMinerAlgorithms";
+	//private static final String DESTINATION_FOLDER = "DataMinerAlgorithms";
-	private static final String TXT_MIMETYPE = "text/plain";
+	//private static final String TXT_MIMETYPE = "text/plain";
-	private static final String EXTENTION_TXT = ".txt";
+	//private static final String EXTENTION_TXT = ".txt";
 
 	public static final Logger logger = LoggerFactory.getLogger(DeploySave.class);
-	private FilesStorage filesStorage;
+	//private FilesStorage filesStorage;
 
 	private ServiceCredentials serviceCredentials;
 	private Project project;
 	private InfoData infoData;
 	private String infoText;
-	private ItemDescription codeJarAdminCopy;
+	//private ItemDescription codeJarAdminCopy;
 
 	public DeploySave(ServiceCredentials serviceCredentials, Project project, InfoData infoData) {
 		this.serviceCredentials = serviceCredentials;
 		this.project = project;
 		this.infoData = infoData;
 		this.infoText = null;
-		this.codeJarAdminCopy = null;
+		//this.codeJarAdminCopy = null;
-		filesStorage = new FilesStorage();
+		//filesStorage = new FilesStorage();
 
 	}
 
 	public void save() throws StatAlgoImporterServiceException {
-		ItemDescription codeJar = project.getProjectTarget().getProjectDeploy().getCodeJar();
+		//ItemDescription codeJar = project.getProjectTarget().getProjectDeploy().getCodeJar();
 
-		InputStream codeJarInputStream = filesStorage.retrieveItemOnWorkspace(serviceCredentials.getUserName(),
+		//InputStream codeJarInputStream = filesStorage.retrieveItemOnWorkspace(serviceCredentials.getUserName(),
-				codeJar.getId());
+		//		codeJar.getId());
 
-		codeJarAdminCopy = filesStorage.createItemOnWorkspaceHowAdmin(ADMIN_USER, codeJarInputStream, codeJar.getName(),
+		//codeJarAdminCopy = filesStorage.createItemOnWorkspaceHowAdmin(ADMIN_USER, codeJarInputStream, codeJar.getName(),
-				CODE_JAR_DESCRIPTION, CODE_JAR_MIMETYPE, DESTINATION_FOLDER);
+		//		CODE_JAR_DESCRIPTION, CODE_JAR_MIMETYPE, DESTINATION_FOLDER);
 
 		createInfoText();
-
+		/*
 		try {
 			int codeJarNamelenght = codeJar.getName().length();
 			String codeJarName;
@@ -75,6 +66,7 @@ public class DeploySave {
 			List<String> lines = Arrays.asList(infoText.split("\\n"));
 			Files.write(reportInstallTempFile, lines, Charset.defaultCharset(), StandardOpenOption.WRITE);
 			logger.debug(reportInstallTempFile.toString());
+			
 			InputStream reportInstallInputStream = Files.newInputStream(reportInstallTempFile);
 
 			filesStorage.createItemOnWorkspaceHowAdmin(ADMIN_USER, reportInstallInputStream,
@@ -84,10 +76,13 @@ public class DeploySave {
 			logger.error("Error writing report install information: " + e.getLocalizedMessage(), e);
 			throw new StatAlgoImporterServiceException(e.getLocalizedMessage(), e);
 		}
+		*/
 
 	}
 
 	private void createInfoText() {
+		ItemDescription codeJar = project.getProjectTarget().getProjectDeploy().getCodeJar();
+
 		infoText = "Username: " + serviceCredentials.getUserName() + "\nFull Name: " + serviceCredentials.getFullName()
 				+ "\nEmail: " + serviceCredentials.getEmail() + "\n\nin VRE: " + serviceCredentials.getScope()
 				+ "\n\nhas requested to publish the algorithm: " + "\nLanguage: " + infoData.getLanguage()
@@ -95,10 +90,10 @@ public class DeploySave {
 				+ "\nAlgorithm Description: " + infoData.getAlgorithmDescription() + "\nAlgorithm Category: "
 				+ infoData.getAlgorithmCategory() + "\n\nInterpreter Version: " + infoData.getInterpreterVersion()
 				+ "\n\nwith the following original jar: "
-				+ project.getProjectTarget().getProjectDeploy().getCodeJar().getPublicLink() + "\nadmin copy jar: "
+				+ codeJar.getPublicLink() + "\nadmin copy jar: "
-				+ codeJarAdminCopy.getPublicLink() + "\n\nInstaller: " + "\n./addAlgorithm.sh "
+				+ codeJar.getPublicLink() + "\n\nInstaller: " + "\n./addAlgorithm.sh "
 				+ infoData.getAlgorithmName() + " " + infoData.getAlgorithmCategory() + " " + infoData.getClassName()
-				+ " " + serviceCredentials.getScope() + " transducerers N " + codeJarAdminCopy.getPublicLink() + " \""
+				+ " " + serviceCredentials.getScope() + " transducerers N " + codeJar.getPublicLink() + " \""
 				+ infoData.getAlgorithmDescription() + "\"";
 	}
 
@@ -106,9 +101,9 @@ public class DeploySave {
 		return infoText;
 	}
 
-	public ItemDescription getCodeJarAdminCopy() {
+	/*public ItemDescription getCodeJarAdminCopy() {
 		return codeJarAdminCopy;
-	}
+	}*/
 
 	public InfoData getInfoData() {
 		return infoData;

src/main/java/org/gcube/portlets/user/statisticalalgorithmsimporter/server/storage/FilesStorage.java

@@ -14,7 +14,6 @@ import java.util.List;
 import org.gcube.common.homelibrary.home.HomeLibrary;
 import org.gcube.common.homelibrary.home.workspace.Workspace;
 import org.gcube.common.homelibrary.home.workspace.WorkspaceItem;
-import org.gcube.common.homelibrary.home.workspace.folder.items.ExternalFile;
 import org.gcube.common.storagehub.client.StreamDescriptor;
 import org.gcube.common.storagehub.client.dsl.FileContainer;
 import org.gcube.common.storagehub.client.dsl.FolderContainer;
@@ -355,7 +354,6 @@ public class FilesStorage {
 
 	/**
 	 * 
-	 * TODO
 	 * 
 	 * @param user
 	 *            User
@@ -374,25 +372,14 @@ public class FilesStorage {
 	 */
 	public void saveItemOnWorkspace(String user, InputStream inputStream, String name, String description,
 			String mimeType, String folderId) throws StatAlgoImporterServiceException {
-		Workspace ws;
 		try {
 			logger.info("Save item on workspace: [user=" + user + ", name=" + name + ", description=" + description
 					+ ", mimeType=" + mimeType + ", folderId=" + folderId + "]");
+			StorageHubClient shc = new StorageHubClient();
+			OpenResolver openResolver = shc.open(folderId);
 
-			ws = HomeLibrary.getUserWorkspace(user);
+			FolderContainer folderContainer = openResolver.asFolder();
-
+			folderContainer.uploadFile(inputStream, name, description);			
-			WorkspaceItem workSpaceItem = ws.getItem(folderId);
-			if (!workSpaceItem.isFolder()) {
-				throw new StatAlgoImporterServiceException("Destination is not a folder!");
-			}
-
-			WorkspaceItem projectItem = ws.find(name, folderId);
-
-			if (projectItem == null) {
-				ws.createExternalFile(name, description, mimeType, inputStream, folderId);
-			} else {
-				ws.updateItem(projectItem.getId(), inputStream);
-			}
 
 			return;
 		} catch (Throwable e) {
@@ -403,8 +390,7 @@ public class FilesStorage {
 	}
 
 	/**
-	 * 
+	 *
-	 * TODO
 	 * 
 	 * @param user
 	 *            User
@@ -424,24 +410,20 @@ public class FilesStorage {
 	 */
 	public ItemDescription createItemOnWorkspace(String user, InputStream inputStream, String name, String description,
 			String mimeType, String folderId) throws StatAlgoImporterServiceException {
-		Workspace ws;
 		try {
 			logger.info("Create item on workspace: [user=" + user + ", name=" + name + ", description=" + description
 					+ ", mimeType=" + mimeType + ", folderId=" + folderId + "]");
+			StorageHubClient shc = new StorageHubClient();
+			OpenResolver openResolver = shc.open(folderId);
 
-			ws = HomeLibrary.getUserWorkspace(user);
+			FolderContainer folderContainer = openResolver.asFolder();
+			FileContainer fileContainerNew = folderContainer.uploadFile(inputStream, name, description);
+			
+			AbstractFileItem fileCreated = fileContainerNew.get();
 
-			WorkspaceItem workSpaceItem = ws.getItem(folderId);
+			ItemDescription itemDescription = new ItemDescription(fileCreated.getId(), fileCreated.getName(),
-
+					fileCreated.getOwner(), fileCreated.getPath(), fileCreated.getClass().getSimpleName());
-			if (!workSpaceItem.isFolder()) {
+			itemDescription.setPublicLink(fileContainerNew.getPublicLink().toString());
-				throw new StatAlgoImporterServiceException("Destination is not a folder!");
-			}
-
-			ExternalFile workspaceItem = ws.createExternalFile(name, description, mimeType, inputStream, folderId);
-
-			ItemDescription itemDescription = new ItemDescription(workspaceItem.getId(), workspaceItem.getName(),
-					workspaceItem.getOwner().getPortalLogin(), workspaceItem.getPath(), workspaceItem.getType().name());
-			itemDescription.setPublicLink(workspaceItem.getPublicLink(false));
 
 			return itemDescription;
 		} catch (Throwable e) {
@@ -453,7 +435,7 @@ public class FilesStorage {
 
 	/**
 	 * 
-	 * TODO
+	 *
 	 * 
 	 * @param user
 	 *            User
@@ -471,13 +453,13 @@ public class FilesStorage {
 	 * @throws StatAlgoImporterServiceException
 	 *             Exception
 	 */
+	/*
 	public ItemDescription createItemOnWorkspaceHowAdmin(String user, InputStream inputStream, String name,
 			String description, String mimeType, String folderName) throws StatAlgoImporterServiceException {
 		Workspace ws;
 		try {
 			logger.info("Create item on workspace how admin: [user=" + user + ", name=" + name + ", description="
 					+ description + ", mimeType=" + mimeType + ", folderName=" + folderName + "]");
-
 			ws = HomeLibrary.getUserWorkspace(user);
 			WorkspaceItem root = ws.getRoot();
 			WorkspaceItem folderItem = ws.find(folderName, root.getId());
@@ -513,7 +495,7 @@ public class FilesStorage {
 			throw new StatAlgoImporterServiceException(e.getLocalizedMessage());
 
 		}
-	}
+	}*/
 
 	/**
 	 * 

src/main/java/org/gcube/portlets/user/statisticalalgorithmsimporter/shared/workspace/ItemDescription.java

@@ -86,7 +86,6 @@ public class ItemDescription implements Serializable {
 		if(itemDescription!=null && id.compareTo(itemDescription.getId())==0 && 
 				name.compareTo(itemDescription.getName())==0 &&
 				owner.compareTo(itemDescription.getOwner())==0 && 
-				path.compareTo(itemDescription.getPath())==0 &&
 				type.compareTo(itemDescription.getType())==0
 				){
 			return true;