ref 12977: SAI - Force the path of the project folder to be updated to a new format
https://support.d4science.org/issues/12977 Now, when the project is open the path is forced to be updated git-svn-id: https://svn.d4science.research-infrastructures.eu/gcube/trunk/portlets/user/statistical-algorithms-importer@174614 82a268e6-3cf1-43bd-a215-b396298e98cf
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@ -0,0 +1,31 @@
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package org.gcube.portlets.user.statisticalalgorithmsimporter.client.workspace;
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import com.google.gwt.core.client.JavaScriptObject;
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/**
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*
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* @author Giancarlo Panichi
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*
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*
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*/
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public class BrowserWindowSupport extends JavaScriptObject {
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// All types that extend JavaScriptObject must have a protected,
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// no-args constructor.
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protected BrowserWindowSupport() {
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}
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public static native BrowserWindowSupport open(String url, String target,
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String options) /*-{
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return $wnd.open(url, target, options);
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}-*/;
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public native void close() /*-{
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this.close();
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}-*/;
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public native void setUrl(String url) /*-{
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if (this.location) {
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this.location = url;
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}
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}-*/;
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}
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@ -13,7 +13,6 @@ import com.allen_sauer.gwt.log.client.Log;
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import com.google.gwt.core.client.GWT;
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import com.google.gwt.event.shared.EventBus;
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import com.google.gwt.http.client.URL;
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import com.google.gwt.user.client.Window;
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import com.google.gwt.user.client.rpc.AsyncCallback;
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/**
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@ -24,9 +23,9 @@ import com.google.gwt.user.client.rpc.AsyncCallback;
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*/
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public class DownloadWidget {
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private EventBus eventBus;
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public DownloadWidget(EventBus eventBus) {
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this.eventBus=eventBus;
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this.eventBus = eventBus;
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}
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public void download(String itemId) {
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@ -73,8 +72,9 @@ public class DownloadWidget {
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url.append(Constants.DOWNLOAD_SERVLET + "/" + itemDescription.getName() + "?itemId=" + itemDescription.getId()
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+ "&" + Constants.CURR_GROUP_ID + "=" + GCubeClientContext.getCurrentContextId());
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Window.open(URL.encode(url.toString()), "_blank", "");
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// Window.open(URL.encode(url.toString()), "_blank", "");
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BrowserWindowSupport browserWindowSupport = BrowserWindowSupport.open("", "_blank", "");
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browserWindowSupport.setUrl(URL.encode(url.toString()));
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}
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}
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@ -61,29 +61,31 @@ public class ProjectArchiver {
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newProjectFolder = filesStorage.getFolderInfoOnWorkspace(serviceCredentials.getUserName(),
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newProjectFolder.getId());
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if (project != null && project.getProjectFolder() != null
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&& newProjectFolder.compareInfo(project.getProjectFolder().getFolder())) {
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} else {
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if (project != null) {
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logger.debug("ProjectArchiver set project folder: " + newProjectFolder);
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project.setProjectFolder(new ProjectFolder(newProjectFolder));
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archive(project, serviceCredentials);
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}
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if (project != null && project.getMainCode() != null && project.getMainCode().getItemDescription() != null) {
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ItemDescription newMainCodeItemDescription = filesStorage.getFileInfoOnWorkspace(
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serviceCredentials.getUserName(), project.getMainCode().getItemDescription().getId());
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String pLink = filesStorage.getPublicLink(serviceCredentials.getUserName(),
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newMainCodeItemDescription.getId());
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newMainCodeItemDescription.setPublicLink(pLink);
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if (newMainCodeItemDescription.compareInfo(project.getMainCode().getItemDescription())) {
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} else {
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project.setMainCode(new MainCode(newMainCodeItemDescription));
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archive(project, serviceCredentials);
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if (project.getMainCode() != null && project.getMainCode().getItemDescription() != null) {
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try {
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ItemDescription newMainCodeItemDescription = filesStorage.getFileInfoOnWorkspace(
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serviceCredentials.getUserName(), project.getMainCode().getItemDescription().getId());
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String pLink = filesStorage.getPublicLink(serviceCredentials.getUserName(),
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newMainCodeItemDescription.getId());
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newMainCodeItemDescription.setPublicLink(pLink);
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logger.debug("ProjectArchiver set main code: " + newMainCodeItemDescription);
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project.setMainCode(new MainCode(newMainCodeItemDescription));
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} catch (Throwable e) {
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logger.error("ProjectArchiver error reading the main code: " + project.getMainCode().getItemDescription());
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archive(project, serviceCredentials);
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throw new StatAlgoImporterServiceException("Error reading the main code of the project!");
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}
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}
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archive(project, serviceCredentials);
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} else {
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project.setProjectFolder(new ProjectFolder(newProjectFolder));
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archive(project, serviceCredentials);
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logger.debug("ProjectArchiver project retrieved is null!");
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throw new StatAlgoImporterServiceException("The Project retrieved is not valid!");
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}
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return project;
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@ -25,7 +25,7 @@ public class StatAlgoImporterTest extends TestCase {
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@Test
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public void testSpecialCharacters() {
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if (true) {
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if (Constants.TEST_ENABLE) {
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try {
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String patternToMatch = "[\\\\!\"#$%&()*+,/:;<=>?@\\[\\]^{|}~]+";
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Pattern p = Pattern.compile(patternToMatch);
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@ -0,0 +1,100 @@
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package org.gcube.portlets.user.statisticalalgorithmsimporter;
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import static org.gcube.common.authorization.client.Constants.authorizationService;
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import java.util.ArrayList;
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import java.util.List;
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import org.gcube.common.authorization.library.provider.SecurityTokenProvider;
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import org.gcube.common.authorization.library.provider.UserInfo;
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import org.gcube.common.scope.api.ScopeProvider;
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import org.gcube.common.storagehub.client.dsl.FileContainer;
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import org.gcube.common.storagehub.client.dsl.FolderContainer;
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import org.gcube.common.storagehub.client.dsl.OpenResolver;
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import org.gcube.common.storagehub.client.dsl.StorageHubClient;
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import org.gcube.common.storagehub.model.items.AbstractFileItem;
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import org.gcube.portlets.user.statisticalalgorithmsimporter.shared.Constants;
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import org.gcube.portlets.user.statisticalalgorithmsimporter.shared.workspace.ItemDescription;
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import org.junit.Test;
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import org.slf4j.Logger;
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import org.slf4j.LoggerFactory;
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import junit.framework.TestCase;
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/**
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*
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* @author Giancarlo Panichi
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*
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*
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*/
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public class StorageHubTest extends TestCase {
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private static Logger logger = LoggerFactory.getLogger(StorageHubTest.class);
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@Test
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public void testCopy() {
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if (Constants.TEST_ENABLE) {
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try {
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String itemId = "5bd115b1-3235-4256-bf29-14e2f6adcba3";
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String folderId = "08c47365-d534-45ff-a690-882ced63100f";
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String scope = Constants.DEFAULT_SCOPE;
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String user = Constants.DEFAULT_USER;
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logger.info(
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"Copy item on folder: [user=" + user + ", itemId=" + itemId + ", folderId=" + folderId + "]");
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List<String> userRoles = new ArrayList<>();
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userRoles.add(Constants.DEFAULT_ROLE);
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/*
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* if (aslSession.getUsername().compareTo("lucio.lelii") == 0)
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* userRoles.add("VRE-Manager");
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*/
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String token;
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try {
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token = authorizationService().generateUserToken(new UserInfo(user, userRoles),
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scope);
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} catch (Exception e) {
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logger.error("Error generating the token for test: " + e.getLocalizedMessage(),e);
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throw new Exception("Error generating the token for test: " + e.getLocalizedMessage(),e);
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}
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logger.debug("Set SecurityToken: " + token);
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SecurityTokenProvider.instance.set(token);
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logger.debug("Set ScopeProvider: " + scope);
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ScopeProvider.instance.set(scope);
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StorageHubClient shc = new StorageHubClient();
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logger.debug("StorageHub client retrieved!");
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logger.debug("Retrieve file: "+itemId);
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OpenResolver openResolverForFile = shc.open(itemId);
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logger.debug("Retrieve FileContainer");
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FileContainer fileContainer = openResolverForFile.asFile();
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logger.debug("FileContainer retrieved!");
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OpenResolver openResolverForFolder = shc.open(folderId);
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FolderContainer folderContainer = openResolverForFolder.asFolder();
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logger.debug("FolderContainer retrieved!");
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logger.debug("Copy Start");
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FileContainer fileCreatedContainer = fileContainer.copy(folderContainer, fileContainer.get().getName());
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logger.debug("Copy Done");
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AbstractFileItem item = fileCreatedContainer.get();
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logger.debug("File retrieved");
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ItemDescription itemDescription = new ItemDescription(item.getId(), item.getName(), item.getOwner(),
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item.getPath(), "");
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logger.debug("Item: " + itemDescription);
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assertTrue("Success", true);
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} catch (Throwable e) {
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logger.error(e.getLocalizedMessage(), e);
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fail("Error:" + e.getLocalizedMessage());
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}
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} else {
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assertTrue("Success", true);
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}
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}
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}
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@ -1,50 +0,0 @@
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package org.gcube.dataanalysis.executor.rscripts;
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import java.io.File;
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import java.util.ArrayList;
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import java.util.LinkedHashMap;
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import org.gcube.dataanalysis.ecoengine.datatypes.PrimitiveType;
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import org.gcube.dataanalysis.ecoengine.datatypes.StatisticalType;
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import org.gcube.dataanalysis.ecoengine.datatypes.enumtypes.PrimitiveTypes;
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import org.gcube.dataanalysis.executor.rscripts.generic.GenericRScript;
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public class KnitrCompiler extends GenericRScript {
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public static enum operators {
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EQUAL, NOT_EQUAL, CONTAINS, BEGINS_WITH, ENDS_WITH
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};
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@Override
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public String getDescription() {
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return "An algorithm to compile Knitr documents. Developed by IRD (reference Julien Bard, julien.barde@ird.fr)";
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}
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protected void initVariables(){
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mainScriptName="IRDTunaAtlas-master/report/knitr/compileKnitR_CNR.R";
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packageURL="http://goo.gl/T7V8LV";
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environmentalvariables = new ArrayList<String>();
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inputvariables.add("zipfile");
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inputvariables.add("file.inout");
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outputvariables.add("pdfresult");
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}
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@Override
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protected void setInputParameters() {
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inputs.add(new PrimitiveType(Enum.class.getName(), operators.values(), PrimitiveTypes.ENUMERATED, name, description, defaultvalue));
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inputs.add(new PrimitiveType(File.class.getName(), null, PrimitiveTypes.FILE, "zipfile", "The file containing R and the markdown (Rnw) files to compile","knitr_wfs.zip"));
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inputs.add(new PrimitiveType(String.class.getName(), null, PrimitiveTypes.STRING, "file.inout", "The name of the R file in the zip package", "main.r"));
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}
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@Override
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public StatisticalType getOutput() {
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output.put("pdfresult",new PrimitiveType(File.class.getName(), new File(outputValues.get("pdfresult")), PrimitiveTypes.FILE, "pdfresult", "The compiled PDF file"));
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PrimitiveType o = new PrimitiveType(LinkedHashMap.class.getName(), output, PrimitiveTypes.MAP, "Output", "");
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return o;
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}
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}
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