1452: Implement a GUI for StatMan Algorithms Importer

Task-Url: https://support.d4science.org/issues/1452

Added Constraint on Software Creation

git-svn-id: https://svn.d4science.research-infrastructures.eu/gcube/trunk/portlets/user/statistical-algorithms-importer@122372 82a268e6-3cf1-43bd-a215-b396298e98cf

src/main/java/org/gcube/portlets/user/statisticalalgorithmsimporter/server/generator/ProjectBuilder.java

@@ -19,7 +19,6 @@ import org.gcube.application.framework.core.session.ASLSession;
 import org.gcube.common.homelibrary.home.exceptions.InternalErrorException;
 import org.gcube.common.homelibrary.home.workspace.WorkspaceFolder;
 import org.gcube.common.homelibrary.home.workspace.WorkspaceItem;
-import org.gcube.portlets.user.statisticalalgorithmsimporter.server.SessionUtil;
 import org.gcube.portlets.user.statisticalalgorithmsimporter.server.storage.FilesStorage;
 import org.gcube.portlets.user.statisticalalgorithmsimporter.shared.exception.StatAlgoImporterServiceException;
 import org.gcube.portlets.user.statisticalalgorithmsimporter.shared.project.Project;
@@ -51,7 +50,7 @@ public class ProjectBuilder {
 	private static final String ECOLOGICAL_ENGINE_JAR_URL = "http://data.d4science.org/id?fileName=ecological-engine.jar&smp-id=56952e9ce4b0e2fd6457272c&contentType=application%2Fjava-archive";
 	private static final String ECOLOGICAL_ENGINE_SMART_EXECUTOR_JAR_URL = "http://data.d4science.org/id?fileName=ecological-engine-smart-executor.jar&smp-id=56952e9ce4b0e2fd6457272e&contentType=application%2Fjava-archive";
 	private static final String ECOLOGICAL_ENGINE_SMART_EXECUTOR_JAR = "ecological-engine-smart-executor.jar";
-	
+
 	private static final String CODE_JAR_MIMETYPE = "application/java-archive";
 	private static final String CODE_JAR_DESCRIPTION = "Statistical Algorithm Jar";
 	private static final String JAR_EXTENTION = ".jar";
@@ -61,7 +60,6 @@ public class ProjectBuilder {
 
 	private Project project;
 	private ASLSession aslSession;
-	private HttpSession session;
 	private ProjectTarget projectTarget;
 	private Path algorithmJava;
 	private Path infoTXT;
@@ -70,7 +68,6 @@ public class ProjectBuilder {
 			HttpSession session) {
 		this.project = project;
 		this.aslSession = aslSession;
-		this.session = session;
 	}
 
 	private void checkInfo() throws StatAlgoImporterServiceException {
@@ -94,21 +91,44 @@ public class ProjectBuilder {
 					"Attention No Project Information Set!");
 		}
 
-		if (project.getInputData().getProjectInfo().getAlgorithmName() == null) {
+		if (project.getInputData().getProjectInfo().getAlgorithmName() == null
+				|| project.getInputData().getProjectInfo().getAlgorithmName()
+						.isEmpty()) {
 			throw new StatAlgoImporterServiceException(
-					"Attention No Algorithm Name Set!");
+					"Attention No Info Name Set!");
 		}
 
-		if (project.getMainCode() == null) {
+		if (project.getInputData().getProjectInfo().getAlgorithmDescription() == null
+				|| project.getInputData().getProjectInfo()
+						.getAlgorithmDescription().isEmpty()) {
+			throw new StatAlgoImporterServiceException(
+					"Attention No Info Description Set!");
+		}
+
+		if (project.getInputData().getInterpreterInfo() == null) {
+			throw new StatAlgoImporterServiceException(
+					"Attention No Interpreter Info Set!");
+		}
+
+		if (project.getInputData().getInterpreterInfo().getVersion() == null
+				|| project.getInputData().getInterpreterInfo().getVersion()
+						.isEmpty()) {
+			throw new StatAlgoImporterServiceException(
+					"Attention No Interpreter Version Set!");
+		}
+
+		if (project.getInputData().getListInputOutputVariables() == null
+				|| project.getInputData().getListInputOutputVariables().size() < 1) {
+			throw new StatAlgoImporterServiceException(
+					"Attention No Input/Output Set!");
+		}
+
+		if (project.getMainCode() == null
+				|| project.getMainCode().getItemDescription() == null) {
 			throw new StatAlgoImporterServiceException(
 					"Attention No Main Code Set");
 		}
 
-		if (project.getInputData() == null) {
-			throw new StatAlgoImporterServiceException(
-					"Attention No Input Data Set!");
-		}
-
 	}
 
 	public Project build() throws StatAlgoImporterServiceException {
@@ -119,7 +139,7 @@ public class ProjectBuilder {
 		createProjectJarFile();
 
 		return project;
-		
+
 	}
 
 	protected void createAlgorithm() throws StatAlgoImporterServiceException {
@@ -207,7 +227,8 @@ public class ProjectBuilder {
 		try {
 			projectPackageItem = filesStorage.createItemOnWorkspace(
 					aslSession.getUsername(), inputStream, project
-							.getInputData().getProjectInfo().getAlgorithmNameToClassName()
+							.getInputData().getProjectInfo()
+							.getAlgorithmNameToClassName()
 							+ PROJECT_PACKAGE_EXTENTION,
 					PROJECT_PACKAGE_DESCRIPTION, PROJECT_PACKAGE_MIMETYPE,
 					targetFolder.getId());
@@ -240,8 +261,7 @@ public class ProjectBuilder {
 
 	private void createIntegrationInfo()
 			throws StatAlgoImporterServiceException {
-		InfoGenerator integrationInfoGenerator = new InfoGenerator(
+		InfoGenerator integrationInfoGenerator = new InfoGenerator(project);
-				project);
 		infoTXT = integrationInfoGenerator.createInfo();
 
 		FilesStorage filesStorage = new FilesStorage();
@@ -251,9 +271,9 @@ public class ProjectBuilder {
 			infoItem = filesStorage.createItemOnWorkspace(
 					aslSession.getUsername(),
 					Files.newInputStream(infoTXT, StandardOpenOption.READ),
-					INFO_NAME + INFO_EXTENTION,
+					INFO_NAME + INFO_EXTENTION, INFO_DESCRIPTION,
-					INFO_DESCRIPTION, INFO_MIMETYPE,
+					INFO_MIMETYPE, project.getProjectTarget().getTargetFolder()
-					project.getProjectTarget().getTargetFolder().getId());
+							.getId());
 		} catch (IOException e) {
 			logger.error(e.getLocalizedMessage());
 			e.printStackTrace();
@@ -297,12 +317,12 @@ public class ProjectBuilder {
 			storage.downloadInputFile(ECOLOGICAL_ENGINE_SMART_EXECUTOR_JAR_URL,
 					ecologicalEngineSmartExecutorJar);
 			Path algorithmTempFile = new File(tempDirectory.toFile(), project
-					.getInputData().getProjectInfo().getAlgorithmNameToClassName()
+					.getInputData().getProjectInfo()
+					.getAlgorithmNameToClassName()
 					+ ALGORITHM_EXTENTION).toPath();
 			Files.copy(algorithmJava, algorithmTempFile);
-			Path infoTempFile = new File(tempDirectory.toFile(),
+			Path infoTempFile = new File(tempDirectory.toFile(), INFO_NAME
-					INFO_NAME + INFO_EXTENTION)
+					+ INFO_EXTENTION).toPath();
-					.toPath();
 			Files.copy(infoTXT, infoTempFile);
 
 			createClassFile(tempDirectory);
@@ -321,18 +341,22 @@ public class ProjectBuilder {
 		}
 	}
 
-	private void copyJarOnWorkspace(Path tempDirectory) throws StatAlgoImporterServiceException {
+	private void copyJarOnWorkspace(Path tempDirectory)
-		Path codeJar=Paths.get(tempDirectory.toString(),project.getInputData().getProjectInfo().getAlgorithmNameToClassName()
+			throws StatAlgoImporterServiceException {
+		Path codeJar = Paths.get(tempDirectory.toString(), project
+				.getInputData().getProjectInfo().getAlgorithmNameToClassName()
 				+ JAR_EXTENTION);
-		
+
 		FilesStorage filesStorage = new FilesStorage();
 		WorkspaceItem codeJarItem;
 
 		try {
-			codeJarItem = filesStorage.createItemOnWorkspace(aslSession
+			codeJarItem = filesStorage.createItemOnWorkspace(
-					.getUsername(), Files.newInputStream(codeJar,
+					aslSession.getUsername(),
-					StandardOpenOption.READ), project.getInputData().getProjectInfo().getAlgorithmNameToClassName()
+					Files.newInputStream(codeJar, StandardOpenOption.READ),
-					+ JAR_EXTENTION, CODE_JAR_DESCRIPTION,
+					project.getInputData().getProjectInfo()
+							.getAlgorithmNameToClassName()
+							+ JAR_EXTENTION, CODE_JAR_DESCRIPTION,
 					CODE_JAR_MIMETYPE, project.getProjectTarget()
 							.getTargetFolder().getId());
 		} catch (IOException e) {
@@ -347,8 +371,9 @@ public class ProjectBuilder {
 			codeJarItemDescription = new ItemDescription(codeJarItem.getId(),
 					codeJarItem.getName(), codeJarItem.getOwner()
 							.getPortalLogin(), codeJarItem.getPath(),
-							codeJarItem.getType().name());
+					codeJarItem.getType().name());
-			codeJarItemDescription.setPublicLink(codeJarItem.getPublicLink(true));
+			codeJarItemDescription.setPublicLink(codeJarItem
+					.getPublicLink(true));
 		} catch (InternalErrorException e) {
 			logger.error(e.getLocalizedMessage());
 			e.printStackTrace();
@@ -369,7 +394,8 @@ public class ProjectBuilder {
 
 			ProcessBuilder pb = new ProcessBuilder("javac", "-cp",
 					tempDirectory.toAbsolutePath().toString() + "/*", project
-							.getInputData().getProjectInfo().getAlgorithmNameToClassName()
+							.getInputData().getProjectInfo()
+							.getAlgorithmNameToClassName()
 							+ ALGORITHM_EXTENTION);
 			pb.directory(tempDirectory.toFile());
 			Path logTXT = new File(tempDirectory.toFile(), LOG_TXT).toPath();
@@ -398,7 +424,8 @@ public class ProjectBuilder {
 			List<String> commands = new ArrayList<>();
 			commands.add("jar");
 			commands.add("-cvf");
-			commands.add(project.getInputData().getProjectInfo().getAlgorithmNameToClassName()
+			commands.add(project.getInputData().getProjectInfo()
+					.getAlgorithmNameToClassName()
 					+ JAR_EXTENTION);
 
 			DirectoryStream<Path> directoryStream = Files