ref 8819: Extend The Algorithms Importer to Manage Many Processes as Black Boxes
https://support.d4science.org/issues/8819 Updated the support for Processes as Black Boxes git-svn-id: https://svn.d4science.research-infrastructures.eu/gcube/trunk/portlets/user/statistical-algorithms-importer@151117 82a268e6-3cf1-43bd-a215-b396298e98cf
This commit is contained in:
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@ -0,0 +1,70 @@
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package org.gcube.portlets.user.statisticalalgorithmsimporter.client.monitor;
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import org.gcube.portlets.user.statisticalalgorithmsimporter.client.monitor.MonitorDeployOperationEvent.MonitorDeployOperationEventHandler;
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import org.gcube.portlets.user.statisticalalgorithmsimporter.shared.Constants;
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import com.google.gwt.user.client.Timer;
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/**
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*
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* @author Giancarlo Panichi
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*
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*
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*/
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public class MonitorDeployOperation {
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private Timer monitor = null;
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private MonitorDeployOperationEventHandler handler;
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public MonitorDeployOperation() {
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monitor = new Timer() {
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public void run() {
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executeCommand();
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}
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};
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}
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private void stopMonitor() {
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if (monitor.isRunning()) {
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monitor.cancel();
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}
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}
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private void executeCommand() {
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MonitorDeployOperationEvent event = new MonitorDeployOperationEvent();
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handler.onMonitor(event);
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}
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public void addHandler(MonitorDeployOperationEventHandler handler) {
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this.handler = handler;
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}
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public void start() {
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startSchedule();
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}
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private void startSchedule() {
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// Execute the timer to expire 2 seconds in the future
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monitor.schedule(Constants.CLIENT_MONITOR_PERIODMILLIS);
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}
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public void repeat() {
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monitor.schedule(Constants.CLIENT_MONITOR_PERIODMILLIS);
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}
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public void stop() {
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stopMonitor();
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}
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}
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@ -0,0 +1,57 @@
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package org.gcube.portlets.user.statisticalalgorithmsimporter.client.monitor;
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import com.google.gwt.event.shared.EventHandler;
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import com.google.gwt.event.shared.GwtEvent;
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import com.google.gwt.event.shared.HandlerRegistration;
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import com.google.gwt.event.shared.HasHandlers;
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/**
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*
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* @author Giancarlo Panichi
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*
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*
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*/
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public class MonitorDeployOperationEvent
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extends GwtEvent<MonitorDeployOperationEvent.MonitorDeployOperationEventHandler> {
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public static Type<MonitorDeployOperationEventHandler> TYPE = new Type<MonitorDeployOperationEventHandler>();
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public interface MonitorDeployOperationEventHandler extends EventHandler {
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void onMonitor(MonitorDeployOperationEvent event);
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}
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public interface HasMonitorDeployOperationEventHandler extends HasHandlers {
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public HandlerRegistration addMonitorDeployOperationEventHandler(MonitorDeployOperationEventHandler handler);
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}
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public MonitorDeployOperationEvent() {
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}
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@Override
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protected void dispatch(MonitorDeployOperationEventHandler handler) {
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handler.onMonitor(this);
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}
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@Override
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public Type<MonitorDeployOperationEventHandler> getAssociatedType() {
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return TYPE;
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}
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public static Type<MonitorDeployOperationEventHandler> getType() {
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return TYPE;
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}
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public static void fire(HasHandlers source, MonitorDeployOperationEvent event) {
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source.fireEvent(event);
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}
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@Override
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public String toString() {
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return "MonitorDeployOperationEvent []";
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}
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}
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@ -9,6 +9,9 @@ import org.gcube.portlets.user.statisticalalgorithmsimporter.client.event.NewCod
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import org.gcube.portlets.user.statisticalalgorithmsimporter.client.event.ProjectStatusEvent;
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import org.gcube.portlets.user.statisticalalgorithmsimporter.client.event.SessionExpiredEvent;
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import org.gcube.portlets.user.statisticalalgorithmsimporter.client.event.WorkAreaEvent;
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import org.gcube.portlets.user.statisticalalgorithmsimporter.client.monitor.MonitorDeployOperation;
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import org.gcube.portlets.user.statisticalalgorithmsimporter.client.monitor.MonitorDeployOperationEvent;
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import org.gcube.portlets.user.statisticalalgorithmsimporter.client.monitor.MonitorDeployOperationEvent.MonitorDeployOperationEventHandler;
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import org.gcube.portlets.user.statisticalalgorithmsimporter.client.monitor.StatAlgoImporterMonitor;
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import org.gcube.portlets.user.statisticalalgorithmsimporter.client.rpc.StatAlgoImporterServiceAsync;
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import org.gcube.portlets.user.statisticalalgorithmsimporter.client.type.ProjectStatusEventType;
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@ -548,17 +551,13 @@ public class ProjectManager {
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});
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}
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public void setBinaryCode(final InputData inputData,final ItemDescription itemDescription) {
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public void setBinaryCode(final InputData inputData, final ItemDescription itemDescription) {
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if (project != null) {
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if (project.getProjectConfig() != null && project.getProjectConfig().getProjectSupport() != null
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&& (project.getProjectConfig().getProjectSupport() instanceof ProjectSupportBlackBox
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||project.getProjectConfig().getProjectSupport() instanceof ProjectSupportBashEdit)) {
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saveInputDataForBinarySet(inputData,itemDescription);
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|| project.getProjectConfig().getProjectSupport() instanceof ProjectSupportBashEdit)) {
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saveInputDataForBinarySet(inputData, itemDescription);
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}
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} else {
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@ -643,27 +642,26 @@ public class ProjectManager {
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final ConfirmMessageBox mb = new ConfirmMessageBox("Delete", "Would you like to delete this resource?");
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mb.addDialogHideHandler(new DialogHideHandler() {
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@Override
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public void onDialogHide(DialogHideEvent event) {
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switch (event.getHideButton()) {
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case NO:
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break;
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case YES:
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deleteItemOnServer(itemDescription, false);
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break;
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default:
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break;
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}
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}
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});
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mb.setWidth(300);
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mb.show();
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@Override
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public void onDialogHide(DialogHideEvent event) {
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switch (event.getHideButton()) {
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case NO:
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break;
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case YES:
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deleteItemOnServer(itemDescription, false);
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break;
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default:
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break;
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}
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}
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});mb.setWidth(300);mb.show();
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}
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}
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private void deleteItemOnServer(ItemDescription itemDescription, final boolean mainCode) {
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final StatAlgoImporterMonitor monitor = new StatAlgoImporterMonitor();
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@ -778,9 +776,10 @@ public class ProjectManager {
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}
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// TODO
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private void softwarePublishOnServer() {
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final StatAlgoImporterMonitor monitor = new StatAlgoImporterMonitor();
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StatAlgoImporterServiceAsync.INSTANCE.publishSoftware(new AsyncCallback<Void>() {
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StatAlgoImporterServiceAsync.INSTANCE.publishSoftware(new AsyncCallback<String>() {
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public void onFailure(Throwable caught) {
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monitor.hide();
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@ -793,15 +792,121 @@ public class ProjectManager {
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}
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}
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public void onSuccess(Void result) {
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monitor.hide();
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UtilsGXT3.info("Publish", "The software has been published!");
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fireProjectStatusSoftwarePublishEvent();
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public void onSuccess(String operationId) {
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Log.debug("Publish result: " + operationId);
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if (saiDescriptor != null && saiDescriptor.getPoolManagerConfig() != null
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&& saiDescriptor.getPoolManagerConfig().isEnable()) {
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if (operationId != null && !operationId.isEmpty()) {
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monitorOperationDeployStatus(operationId, monitor);
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} else {
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monitor.hide();
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Log.info(
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"Publish, the software has been published, but no autodeploy on server is enable so some time is required for installation by administrators!");
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UtilsGXT3.info("Publish", "The software has been published!");
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fireProjectStatusSoftwarePublishEvent();
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}
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} else {
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monitor.hide();
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UtilsGXT3.info("Publish", "The software has been published!");
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fireProjectStatusSoftwarePublishEvent();
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}
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}
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});
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}
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// TODO
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private void monitorOperationDeployStatus(final String operationId, final StatAlgoImporterMonitor monitor) {
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final MonitorDeployOperation monitorDeployOperation = new MonitorDeployOperation();
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MonitorDeployOperationEventHandler handler = new MonitorDeployOperationEventHandler() {
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@Override
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public void onMonitor(MonitorDeployOperationEvent event) {
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StatAlgoImporterServiceAsync.INSTANCE.getDeployOperationStatus(operationId, new AsyncCallback<String>() {
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public void onFailure(Throwable caught) {
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monitorDeployOperation.stop();
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monitor.hide();
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if (caught instanceof StatAlgoImporterSessionExpiredException) {
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eventBus.fireEvent(new SessionExpiredEvent(SessionExpiredType.EXPIREDONSERVER));
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} else {
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UtilsGXT3.alert("Error", caught.getLocalizedMessage());
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fireProjectStatusExplorerRefreshEvent();
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}
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}
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public void onSuccess(String deployOperationStatus) {
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Log.debug("Deploy Operation Status: " + deployOperationStatus);
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if(deployOperationStatus==null){
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monitorDeployOperation.repeat();
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}
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switch(deployOperationStatus){
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case "COMPLETED":
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monitorDeployOperation.stop();
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monitor.hide();
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UtilsGXT3.info("Publish", "The software has been published!");
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fireProjectStatusSoftwarePublishEvent();
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break;
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case "FAILED":
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monitorDeployOperation.stop();
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retrieveOperationDeployLogs(operationId, monitor);
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break;
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case "INPROGRESS":
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monitorDeployOperation.repeat();
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break;
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default:
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monitorDeployOperation.repeat();
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break;
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}
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}
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});
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}
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};
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monitorDeployOperation.addHandler(handler);
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monitorDeployOperation.start();
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}
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private void retrieveOperationDeployLogs(final String operationId, final StatAlgoImporterMonitor monitor) {
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StatAlgoImporterServiceAsync.INSTANCE.getDeployOperationLogs(operationId, new AsyncCallback<String>() {
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public void onFailure(Throwable caught) {
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monitor.hide();
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if (caught instanceof StatAlgoImporterSessionExpiredException) {
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eventBus.fireEvent(new SessionExpiredEvent(SessionExpiredType.EXPIREDONSERVER));
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} else {
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UtilsGXT3.alert("Error", caught.getLocalizedMessage());
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fireProjectStatusExplorerRefreshEvent();
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}
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}
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public void onSuccess(String logs) {
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Log.debug("Deploy Operation Logs: " + logs);
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monitor.hide();
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UtilsGXT3.alert("Error", "Error deploying the algorithm: "+logs);
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fireProjectStatusExplorerRefreshEvent();
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}
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});
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}
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public void startProjectManager() {
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retrieveSAIDescriptor(null);
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}
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@ -78,8 +78,12 @@ public interface StatAlgoImporterService extends RemoteService {
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public Project setNewCode(ItemDescription itemDescription, String code) throws StatAlgoImporterServiceException;
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public void publishSoftware() throws StatAlgoImporterServiceException;
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public String publishSoftware() throws StatAlgoImporterServiceException;
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public String getDeployOperationStatus(String operationId) throws StatAlgoImporterServiceException;
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public String getDeployOperationLogs(String operationId) throws StatAlgoImporterServiceException;
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public void repackageSoftware() throws StatAlgoImporterServiceException;
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@ -60,10 +60,14 @@ public interface StatAlgoImporterServiceAsync {
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void restoreUISession(String value, AsyncCallback<Project> asyncCallback);
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void publishSoftware(AsyncCallback<Void> asyncCallback);
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void publishSoftware(AsyncCallback<String> asyncCallback);
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void repackageSoftware(AsyncCallback<Void> asyncCallback);
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void getDeployOperationStatus(String operationId, AsyncCallback<String> callback);
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void getDeployOperationLogs(String operationId, AsyncCallback<String> callback);
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@ -15,6 +15,7 @@ import org.gcube.portlets.user.statisticalalgorithmsimporter.server.file.CodeFil
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import org.gcube.portlets.user.statisticalalgorithmsimporter.server.social.Recipient;
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import org.gcube.portlets.user.statisticalalgorithmsimporter.server.util.ServiceCredentials;
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import org.gcube.portlets.user.statisticalalgorithmsimporter.shared.Constants;
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import org.gcube.portlets.user.statisticalalgorithmsimporter.shared.descriptor.SAIDescriptor;
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import org.gcube.portlets.user.statisticalalgorithmsimporter.shared.exception.StatAlgoImporterServiceException;
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import org.gcube.portlets.user.statisticalalgorithmsimporter.shared.file.FileUploadMonitor;
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import org.gcube.portlets.user.statisticalalgorithmsimporter.shared.project.Project;
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@ -204,7 +205,23 @@ public class SessionUtil {
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return recipients;
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}
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//
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public static SAIDescriptor getSAIDescriptor(HttpServletRequest httpRequest,
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ServiceCredentials serviceCredentials) throws Exception {
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SessionOp<SAIDescriptor> sessionOp = new SessionOp<>();
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SAIDescriptor saiDescriptor = sessionOp.get(httpRequest, serviceCredentials,
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SessionConstants.SAI_DESCRIPTOR, SAIDescriptor.class);
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return saiDescriptor;
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}
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public static void setSAIDescriptor(HttpServletRequest httpRequest, ServiceCredentials serviceCredentials,
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SAIDescriptor saiDescriptor) {
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SessionOp<SAIDescriptor> sessionOp = new SessionOp<>();
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sessionOp.set(httpRequest, serviceCredentials, SessionConstants.SAI_DESCRIPTOR, saiDescriptor);
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}
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//
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public static FileUploadMonitor getFileUploadMonitor(HttpServletRequest httpRequest,
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ServiceCredentials serviceCredentials) throws Exception {
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@ -15,8 +15,10 @@ import org.gcube.portlets.user.statisticalalgorithmsimporter.server.file.CodeRea
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import org.gcube.portlets.user.statisticalalgorithmsimporter.server.generator.ProjectBuilder;
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import org.gcube.portlets.user.statisticalalgorithmsimporter.server.generator.ProjectDeploy;
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import org.gcube.portlets.user.statisticalalgorithmsimporter.server.is.BuildSAIDescriptor;
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import org.gcube.portlets.user.statisticalalgorithmsimporter.server.poolmanager.DataMinerPoolManager;
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import org.gcube.portlets.user.statisticalalgorithmsimporter.server.social.Recipient;
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import org.gcube.portlets.user.statisticalalgorithmsimporter.server.storage.CodeSave;
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import org.gcube.portlets.user.statisticalalgorithmsimporter.server.storage.DeploySave;
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import org.gcube.portlets.user.statisticalalgorithmsimporter.server.storage.FilesStorage;
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import org.gcube.portlets.user.statisticalalgorithmsimporter.server.storage.ProjectArchiver;
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import org.gcube.portlets.user.statisticalalgorithmsimporter.server.util.ServiceCredentials;
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@ -128,6 +130,7 @@ public class StatAlgoImporterServiceImpl extends RemoteServiceServlet implements
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ServiceCredentials serviceCredentials = SessionUtil.getServiceCredentials(httpRequest);
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logger.debug("getSAIDescriptor()");
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SAIDescriptor saiDescriptor = BuildSAIDescriptor.build(serviceCredentials.getScope());
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SessionUtil.setSAIDescriptor(httpRequest, serviceCredentials, saiDescriptor);
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return saiDescriptor;
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} catch (StatAlgoImporterServiceException e) {
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@ -285,14 +288,15 @@ public class StatAlgoImporterServiceImpl extends RemoteServiceServlet implements
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logger.debug("openProjectOnWorkspace()");
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Project project = ProjectArchiver.readProject(newProjectFolder, serviceCredentials);
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if(project!=null){
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if(project.getProjectConfig()==null){
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project.setProjectConfig(new ProjectConfig(ProjectLanguageType.R.getId(), new ProjectSupportREdit()));
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} else{
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if (project != null) {
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if (project.getProjectConfig() == null) {
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project.setProjectConfig(
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new ProjectConfig(ProjectLanguageType.R.getId(), new ProjectSupportREdit()));
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} else {
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}
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}
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SessionUtil.setProjectSession(httpRequest, serviceCredentials, project);
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return project;
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@ -583,8 +587,7 @@ public class StatAlgoImporterServiceImpl extends RemoteServiceServlet implements
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}
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@Override
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public Project setNewCode(ItemDescription fileDescription, String code)
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throws StatAlgoImporterServiceException {
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public Project setNewCode(ItemDescription fileDescription, String code) throws StatAlgoImporterServiceException {
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try {
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HttpServletRequest httpRequest = this.getThreadLocalRequest();
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ServiceCredentials serviceCredentials = SessionUtil.getServiceCredentials(httpRequest);
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@ -596,8 +599,8 @@ public class StatAlgoImporterServiceImpl extends RemoteServiceServlet implements
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if (project.getProjectConfig().getProjectSupport() instanceof ProjectSupportREdit) {
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CodeSave codeSave = new CodeSave();
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ItemDescription mainCodeItemDescription = codeSave.saveNew(serviceCredentials,
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fileDescription, code, project.getProjectFolder().getFolder().getId());
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ItemDescription mainCodeItemDescription = codeSave.saveNew(serviceCredentials, fileDescription,
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code, project.getProjectFolder().getFolder().getId());
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MainCode mainCode = new MainCode(mainCodeItemDescription);
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project.setMainCode(mainCode);
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project.setInputData(null);
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@ -608,7 +611,7 @@ public class StatAlgoImporterServiceImpl extends RemoteServiceServlet implements
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if (project.getProjectConfig().getProjectSupport() instanceof ProjectSupportBashEdit) {
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ProjectSupportBashEdit projectSupportBashEdit = (ProjectSupportBashEdit) project
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.getProjectConfig().getProjectSupport();
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CodeSave codeSave = new CodeSave();
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ItemDescription binaryCodeItemDescription = codeSave.saveNew(serviceCredentials,
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fileDescription, code, project.getProjectFolder().getFolder().getId());
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|
|
@ -622,7 +625,7 @@ public class StatAlgoImporterServiceImpl extends RemoteServiceServlet implements
|
|||
} else {
|
||||
throw new StatAlgoImporterServiceException("Error in project configuration!");
|
||||
}
|
||||
|
||||
|
||||
SessionUtil.setProjectSession(httpRequest, serviceCredentials, project);
|
||||
return project;
|
||||
} else {
|
||||
|
|
@ -650,7 +653,8 @@ public class StatAlgoImporterServiceImpl extends RemoteServiceServlet implements
|
|||
if (project != null) {
|
||||
project.setInputData(inputData);
|
||||
SessionUtil.setProjectSession(httpRequest, serviceCredentials, project);
|
||||
ProjectBuilder projectBuilder = new ProjectBuilder(project, serviceCredentials);
|
||||
SAIDescriptor saiDescriptor = SessionUtil.getSAIDescriptor(httpRequest, serviceCredentials);
|
||||
ProjectBuilder projectBuilder = new ProjectBuilder(project, serviceCredentials,saiDescriptor);
|
||||
project = projectBuilder.buildTarget();
|
||||
SessionUtil.setProjectSession(httpRequest, serviceCredentials, project);
|
||||
ProjectArchiver.archive(project, serviceCredentials);
|
||||
|
|
@ -692,7 +696,7 @@ public class StatAlgoImporterServiceImpl extends RemoteServiceServlet implements
|
|||
}
|
||||
|
||||
@Override
|
||||
public void publishSoftware() throws StatAlgoImporterServiceException {
|
||||
public String publishSoftware() throws StatAlgoImporterServiceException {
|
||||
try {
|
||||
HttpServletRequest httpRequest = this.getThreadLocalRequest();
|
||||
ServiceCredentials serviceCredentials = SessionUtil.getServiceCredentials(httpRequest);
|
||||
|
|
@ -700,18 +704,31 @@ public class StatAlgoImporterServiceImpl extends RemoteServiceServlet implements
|
|||
ArrayList<Recipient> recipients = SessionUtil.getRecipients(httpRequest.getServletContext());
|
||||
Project project = SessionUtil.getProjectSession(httpRequest, serviceCredentials);
|
||||
if (project != null) {
|
||||
ProjectBuilder projectBuilder = new ProjectBuilder(project, serviceCredentials);
|
||||
SAIDescriptor saiDescriptor = SessionUtil.getSAIDescriptor(httpRequest, serviceCredentials);
|
||||
ProjectBuilder projectBuilder = new ProjectBuilder(project, serviceCredentials, saiDescriptor);
|
||||
project = projectBuilder.buildDeploy();
|
||||
SessionUtil.setProjectSession(httpRequest, serviceCredentials, project);
|
||||
ProjectArchiver.archive(project, serviceCredentials);
|
||||
ProjectDeploy projectDeploy=new ProjectDeploy(httpRequest, serviceCredentials, project, recipients);
|
||||
projectDeploy.deploy();
|
||||
ProjectDeploy projectDeploy = new ProjectDeploy(httpRequest, serviceCredentials, project, recipients);
|
||||
DeploySave deploySave = projectDeploy.deploy();
|
||||
if (saiDescriptor != null && saiDescriptor.getPoolManagerConfig() != null
|
||||
&& saiDescriptor.getPoolManagerConfig().isEnable()) {
|
||||
logger.info("Deploy On PoolManager");
|
||||
logger.debug("CodeJarAdminCopy for PoolManager: " + deploySave.getCodeJarAdminCopy());
|
||||
DataMinerPoolManager poolManager = new DataMinerPoolManager(serviceCredentials);
|
||||
String operationId = poolManager.deployAlgorithm(deploySave.getInfoData(),
|
||||
deploySave.getCodeJarAdminCopy());
|
||||
logger.info("Deploy operationId: " + operationId);
|
||||
return operationId;
|
||||
} else {
|
||||
logger.info("Deploy On PoolManager disabled");
|
||||
return null;
|
||||
}
|
||||
} else {
|
||||
throw new StatAlgoImporterServiceException(
|
||||
"The software was not created correctly try to recreate it!");
|
||||
}
|
||||
|
||||
return;
|
||||
} catch (StatAlgoImporterServiceException e) {
|
||||
e.printStackTrace();
|
||||
throw e;
|
||||
|
|
@ -731,7 +748,8 @@ public class StatAlgoImporterServiceImpl extends RemoteServiceServlet implements
|
|||
logger.debug("RepackageSoftware()");
|
||||
Project project = SessionUtil.getProjectSession(httpRequest, serviceCredentials);
|
||||
if (project != null) {
|
||||
ProjectBuilder projectBuilder = new ProjectBuilder(project, serviceCredentials);
|
||||
SAIDescriptor saiDescriptor = SessionUtil.getSAIDescriptor(httpRequest, serviceCredentials);
|
||||
ProjectBuilder projectBuilder = new ProjectBuilder(project, serviceCredentials,saiDescriptor);
|
||||
project = projectBuilder.buildRepackage();
|
||||
SessionUtil.setProjectSession(httpRequest, serviceCredentials, project);
|
||||
ProjectArchiver.archive(project, serviceCredentials);
|
||||
|
|
@ -741,7 +759,7 @@ public class StatAlgoImporterServiceImpl extends RemoteServiceServlet implements
|
|||
|
||||
return;
|
||||
} catch (StatAlgoImporterServiceException e) {
|
||||
e.printStackTrace();
|
||||
logger.error("repackageSoftware(): " + e.getLocalizedMessage(), e);
|
||||
throw e;
|
||||
} catch (Throwable e) {
|
||||
logger.error("repackageSoftware(): " + e.getLocalizedMessage(), e);
|
||||
|
|
@ -751,4 +769,46 @@ public class StatAlgoImporterServiceImpl extends RemoteServiceServlet implements
|
|||
|
||||
}
|
||||
|
||||
@Override
|
||||
public String getDeployOperationStatus(String operationId) throws StatAlgoImporterServiceException {
|
||||
try {
|
||||
HttpServletRequest httpRequest = this.getThreadLocalRequest();
|
||||
ServiceCredentials serviceCredentials = SessionUtil.getServiceCredentials(httpRequest);
|
||||
logger.debug("getDeployOperationStatus(): OperationId=" + operationId);
|
||||
DataMinerPoolManager poolManager = new DataMinerPoolManager(serviceCredentials);
|
||||
String deployOperationStatus = poolManager.getDeployOperationStatus(operationId);
|
||||
logger.debug("Deploy Operation Status: " + deployOperationStatus);
|
||||
return deployOperationStatus;
|
||||
|
||||
} catch (StatAlgoImporterServiceException e) {
|
||||
e.printStackTrace();
|
||||
throw e;
|
||||
} catch (Throwable e) {
|
||||
logger.error("getDeployOperationStatus(): " + e.getLocalizedMessage(), e);
|
||||
e.printStackTrace();
|
||||
throw new StatAlgoImporterServiceException(e.getLocalizedMessage());
|
||||
}
|
||||
}
|
||||
|
||||
@Override
|
||||
public String getDeployOperationLogs(String operationId) throws StatAlgoImporterServiceException {
|
||||
try {
|
||||
HttpServletRequest httpRequest = this.getThreadLocalRequest();
|
||||
ServiceCredentials serviceCredentials = SessionUtil.getServiceCredentials(httpRequest);
|
||||
logger.debug("getDeployOperationLogs(): OperationId=" + operationId);
|
||||
DataMinerPoolManager poolManager = new DataMinerPoolManager(serviceCredentials);
|
||||
String deployOperationLogsLink = poolManager.getDeployOperationLogsLink(operationId);
|
||||
logger.debug("Deploy Operation Logs Link: " + deployOperationLogsLink);
|
||||
return deployOperationLogsLink;
|
||||
|
||||
} catch (StatAlgoImporterServiceException e) {
|
||||
e.printStackTrace();
|
||||
throw e;
|
||||
} catch (Throwable e) {
|
||||
logger.error("getDeployOperationLogs(): " + e.getLocalizedMessage(), e);
|
||||
e.printStackTrace();
|
||||
throw new StatAlgoImporterServiceException(e.getLocalizedMessage());
|
||||
}
|
||||
}
|
||||
|
||||
}
|
||||
|
|
|
|||
|
|
@ -20,7 +20,7 @@ import org.slf4j.LoggerFactory;
|
|||
public class GeneralPurposeScriptProducer {
|
||||
|
||||
private static final Logger logger = LoggerFactory.getLogger(GeneralPurposeScriptProducer.class);
|
||||
public static final String REMOTE_TEMPLATE_FILE = "http://svn.research-infrastructures.eu/public/d4science/gcube/trunk/data-analysis/RConfiguration/RD4SFunctions/SAITemplateForExternalInvocation.R";
|
||||
private String remoteTemplateFile;
|
||||
|
||||
|
||||
// name,type,default
|
||||
|
|
@ -36,6 +36,10 @@ public class GeneralPurposeScriptProducer {
|
|||
}
|
||||
}
|
||||
|
||||
public GeneralPurposeScriptProducer(String remoteTemplateFile){
|
||||
this.remoteTemplateFile=remoteTemplateFile;
|
||||
}
|
||||
|
||||
public String URLReader(String urlToTemplate) throws Exception {
|
||||
URL remoteFile = new URL(urlToTemplate);
|
||||
BufferedReader in = new BufferedReader(new InputStreamReader(remoteFile.openStream()));
|
||||
|
|
@ -68,7 +72,7 @@ public class GeneralPurposeScriptProducer {
|
|||
String processInvocation = generateExternalProcessInvokation(mainSoftwareName, input);
|
||||
String outputDeclaration = generateOutputStrings(output);
|
||||
String fileExistenceChecks = generateFileExistenceCheck(output);
|
||||
String script = URLReader(REMOTE_TEMPLATE_FILE);
|
||||
String script = URLReader(remoteTemplateFile);
|
||||
|
||||
script = script.replace("#INPUT_DECLARATION#", inputDeclaration);
|
||||
script = script.replace("#PROCESS_COMPOSITION#", processInvocation);
|
||||
|
|
|
|||
|
|
@ -33,8 +33,9 @@ public class MainGenerator {
|
|||
private static final Logger logger = LoggerFactory.getLogger(MainGenerator.class);
|
||||
private static final String R_MIMETYPE = "text/plain";
|
||||
private static final String R_DESCRIPTION = "R script for ";
|
||||
|
||||
|
||||
public void createMain(ServiceCredentials serviceCredentials, Project project)
|
||||
public void createMain(ServiceCredentials serviceCredentials, Project project, String remoteTemplateFile)
|
||||
throws StatAlgoImporterServiceException {
|
||||
|
||||
logger.debug("Project: " + project);
|
||||
|
|
@ -52,7 +53,7 @@ public class MainGenerator {
|
|||
logger.debug("Language: " + project.getProjectConfig().getLanguage());
|
||||
logger.debug("Binary software: " + binarySoftware);
|
||||
|
||||
GeneralPurposeScriptProducer s = new GeneralPurposeScriptProducer();
|
||||
GeneralPurposeScriptProducer s = new GeneralPurposeScriptProducer(remoteTemplateFile);
|
||||
|
||||
List<GeneralPurposeScriptProducer.Triple> input = new ArrayList<>();
|
||||
List<GeneralPurposeScriptProducer.Triple> output = new ArrayList<>();
|
||||
|
|
|
|||
|
|
@ -21,6 +21,8 @@ import org.gcube.common.homelibrary.home.workspace.WorkspaceItem;
|
|||
import org.gcube.portlets.user.statisticalalgorithmsimporter.server.blackbox.MainGenerator;
|
||||
import org.gcube.portlets.user.statisticalalgorithmsimporter.server.storage.FilesStorage;
|
||||
import org.gcube.portlets.user.statisticalalgorithmsimporter.server.util.ServiceCredentials;
|
||||
import org.gcube.portlets.user.statisticalalgorithmsimporter.shared.Constants;
|
||||
import org.gcube.portlets.user.statisticalalgorithmsimporter.shared.descriptor.SAIDescriptor;
|
||||
import org.gcube.portlets.user.statisticalalgorithmsimporter.shared.exception.StatAlgoImporterServiceException;
|
||||
import org.gcube.portlets.user.statisticalalgorithmsimporter.shared.project.Project;
|
||||
import org.gcube.portlets.user.statisticalalgorithmsimporter.shared.project.ProjectCompile;
|
||||
|
|
@ -77,12 +79,14 @@ public class ProjectBuilder {
|
|||
private Project project;
|
||||
private String backupFolderId;
|
||||
private ServiceCredentials serviceCredentials;
|
||||
private SAIDescriptor saiDescriptor;
|
||||
private Path algorithmJava;
|
||||
private Path infoTXT;
|
||||
|
||||
public ProjectBuilder(Project project, ServiceCredentials serviceCredentials) {
|
||||
public ProjectBuilder(Project project, ServiceCredentials serviceCredentials, SAIDescriptor saiDescriptor) {
|
||||
this.project = project;
|
||||
this.serviceCredentials = serviceCredentials;
|
||||
this.saiDescriptor = saiDescriptor;
|
||||
}
|
||||
|
||||
public Project buildTarget() throws StatAlgoImporterServiceException {
|
||||
|
|
@ -134,8 +138,8 @@ public class ProjectBuilder {
|
|||
|
||||
private void createMainCodeIfRequest() throws StatAlgoImporterServiceException {
|
||||
if (project.getProjectConfig() != null && project.getProjectConfig().getProjectSupport() != null
|
||||
&& (project.getProjectConfig().getProjectSupport() instanceof ProjectSupportBlackBox||
|
||||
project.getProjectConfig().getProjectSupport() instanceof ProjectSupportBashEdit)) {
|
||||
&& (project.getProjectConfig().getProjectSupport() instanceof ProjectSupportBlackBox
|
||||
|| project.getProjectConfig().getProjectSupport() instanceof ProjectSupportBashEdit)) {
|
||||
if (project.getMainCode() != null && project.getMainCode().getItemDescription() != null) {
|
||||
ItemDescription mainCodeItemDescription = project.getMainCode().getItemDescription();
|
||||
if (mainCodeItemDescription.getId() != null && !mainCodeItemDescription.getId().isEmpty()) {
|
||||
|
|
@ -144,7 +148,12 @@ public class ProjectBuilder {
|
|||
}
|
||||
}
|
||||
MainGenerator mainGenerator = new MainGenerator();
|
||||
mainGenerator.createMain(serviceCredentials, project);
|
||||
if (saiDescriptor != null && saiDescriptor.getRemoteTemplateFile() != null
|
||||
&& !saiDescriptor.getRemoteTemplateFile().isEmpty()) {
|
||||
mainGenerator.createMain(serviceCredentials, project, saiDescriptor.getRemoteTemplateFile());
|
||||
} else {
|
||||
mainGenerator.createMain(serviceCredentials, project, Constants.REMOTE_TEMPLATE_FILE);
|
||||
}
|
||||
}
|
||||
|
||||
}
|
||||
|
|
@ -418,8 +427,8 @@ public class ProjectBuilder {
|
|||
}
|
||||
} else {
|
||||
if (project.getProjectConfig().getProjectSupport() instanceof ProjectSupportBashEdit) {
|
||||
ProjectSupportBashEdit projectSupportBashEdit = (ProjectSupportBashEdit) project.getProjectConfig()
|
||||
.getProjectSupport();
|
||||
ProjectSupportBashEdit projectSupportBashEdit = (ProjectSupportBashEdit) project
|
||||
.getProjectConfig().getProjectSupport();
|
||||
|
||||
if (projectSupportBashEdit.getBinaryItem() == null) {
|
||||
throw new StatAlgoImporterServiceException("Attention No Code Set");
|
||||
|
|
|
|||
|
|
@ -4,7 +4,6 @@ import java.util.ArrayList;
|
|||
|
||||
import javax.servlet.http.HttpServletRequest;
|
||||
|
||||
import org.gcube.portlets.user.statisticalalgorithmsimporter.server.poolmanager.DataMinerPoolManager;
|
||||
import org.gcube.portlets.user.statisticalalgorithmsimporter.server.social.AlgorithmNotification;
|
||||
import org.gcube.portlets.user.statisticalalgorithmsimporter.server.social.Recipient;
|
||||
import org.gcube.portlets.user.statisticalalgorithmsimporter.server.storage.DeploySave;
|
||||
|
|
@ -38,21 +37,16 @@ public class ProjectDeploy {
|
|||
|
||||
}
|
||||
|
||||
public void deploy() throws StatAlgoImporterServiceException{
|
||||
InfoGenerator infoGenerator=new InfoGenerator(project, serviceCredentials);
|
||||
InfoData infoData=infoGenerator.readInfo();
|
||||
public DeploySave deploy() throws StatAlgoImporterServiceException {
|
||||
logger.debug("ProjectDeploy deploy()");
|
||||
InfoGenerator infoGenerator = new InfoGenerator(project, serviceCredentials);
|
||||
InfoData infoData = infoGenerator.readInfo();
|
||||
logger.debug("Deploy Save");
|
||||
DeploySave deploySave=new DeploySave(serviceCredentials, project, infoData);
|
||||
DeploySave deploySave = new DeploySave(serviceCredentials, project, infoData);
|
||||
deploySave.save();
|
||||
logger.debug("Send notify");
|
||||
sendNotify(deploySave.getInfoText());
|
||||
logger.debug("CodeJarAdminCopy for PoolManager: "+deploySave.getCodeJarAdminCopy());
|
||||
DataMinerPoolManager poolManager=new DataMinerPoolManager(serviceCredentials);
|
||||
String operationId=poolManager.deployAlgorithm(infoData, deploySave.getCodeJarAdminCopy());
|
||||
logger.debug("Deploy operationId: "+operationId);
|
||||
String deployStatus=poolManager.monitorAlgorithmDeploy(operationId);
|
||||
logger.debug("Deploy status: "+deployStatus);
|
||||
|
||||
return deploySave;
|
||||
}
|
||||
|
||||
private void sendNotify(String body) {
|
||||
|
|
|
|||
|
|
@ -3,6 +3,7 @@ package org.gcube.portlets.user.statisticalalgorithmsimporter.server.is;
|
|||
import java.util.ArrayList;
|
||||
|
||||
import org.gcube.portlets.user.statisticalalgorithmsimporter.shared.Constants;
|
||||
import org.gcube.portlets.user.statisticalalgorithmsimporter.shared.descriptor.PoolManagerConfig;
|
||||
import org.gcube.portlets.user.statisticalalgorithmsimporter.shared.descriptor.ProjectLanguageType;
|
||||
import org.gcube.portlets.user.statisticalalgorithmsimporter.shared.descriptor.ProjectSetup;
|
||||
import org.gcube.portlets.user.statisticalalgorithmsimporter.shared.descriptor.ProjectSupportType;
|
||||
|
|
@ -26,26 +27,34 @@ public class BuildSAIDescriptor {
|
|||
|
||||
if (Constants.DEBUG_MODE) {
|
||||
logger.info("Debug Mode");
|
||||
PoolManagerConfig poolManagerConfig = new PoolManagerConfig(false);
|
||||
|
||||
ArrayList<ProjectSetup> availableProjectConfigurations = new ArrayList<>();
|
||||
ProjectSetup r = new ProjectSetup(ProjectLanguageType.R.getId(), ProjectSupportType.REDIT);
|
||||
availableProjectConfigurations.add(r);
|
||||
ProjectSetup rBlackBox = new ProjectSetup(ProjectLanguageType.R_BLACKBOX.getId(), ProjectSupportType.BLACKBOX);
|
||||
ProjectSetup rBlackBox = new ProjectSetup(ProjectLanguageType.R_BLACKBOX.getId(),
|
||||
ProjectSupportType.BLACKBOX);
|
||||
availableProjectConfigurations.add(rBlackBox);
|
||||
ProjectSetup java = new ProjectSetup(ProjectLanguageType.JAVA.getId(), ProjectSupportType.BLACKBOX);
|
||||
availableProjectConfigurations.add(java);
|
||||
ProjectSetup knimeWorkflow = new ProjectSetup(ProjectLanguageType.KNIME_WORKFLOW.getId(), ProjectSupportType.BLACKBOX);
|
||||
ProjectSetup knimeWorkflow = new ProjectSetup(ProjectLanguageType.KNIME_WORKFLOW.getId(),
|
||||
ProjectSupportType.BLACKBOX);
|
||||
availableProjectConfigurations.add(knimeWorkflow);
|
||||
ProjectSetup linuxCompiled = new ProjectSetup(ProjectLanguageType.LINUX_COMPILED.getId(), ProjectSupportType.BLACKBOX);
|
||||
ProjectSetup linuxCompiled = new ProjectSetup(ProjectLanguageType.LINUX_COMPILED.getId(),
|
||||
ProjectSupportType.BLACKBOX);
|
||||
availableProjectConfigurations.add(linuxCompiled);
|
||||
ProjectSetup octave = new ProjectSetup(ProjectLanguageType.OCTAVE.getId(), ProjectSupportType.BLACKBOX);
|
||||
availableProjectConfigurations.add(octave);
|
||||
ProjectSetup python = new ProjectSetup(ProjectLanguageType.PYTHON.getId(), ProjectSupportType.BLACKBOX);
|
||||
availableProjectConfigurations.add(python);
|
||||
ProjectSetup windowsCompiled = new ProjectSetup(ProjectLanguageType.WINDOWS_COMPILED.getId(), ProjectSupportType.BLACKBOX);
|
||||
ProjectSetup windowsCompiled = new ProjectSetup(ProjectLanguageType.WINDOWS_COMPILED.getId(),
|
||||
ProjectSupportType.BLACKBOX);
|
||||
availableProjectConfigurations.add(windowsCompiled);
|
||||
ProjectSetup preInstalled = new ProjectSetup(ProjectLanguageType.PRE_INSTALLED.getId(), ProjectSupportType.BASHEDIT);
|
||||
ProjectSetup preInstalled = new ProjectSetup(ProjectLanguageType.PRE_INSTALLED.getId(),
|
||||
ProjectSupportType.BASHEDIT);
|
||||
availableProjectConfigurations.add(preInstalled);
|
||||
saiDescriptor = new SAIDescriptor(availableProjectConfigurations);
|
||||
saiDescriptor = new SAIDescriptor(poolManagerConfig, Constants.REMOTE_TEMPLATE_FILE,
|
||||
availableProjectConfigurations);
|
||||
} else {
|
||||
logger.info("Production Mode");
|
||||
SAIDescriptorJAXB saiDescriptorJAXB = null;
|
||||
|
|
@ -54,27 +63,77 @@ public class BuildSAIDescriptor {
|
|||
} catch (StatAlgoImporterServiceException e) {
|
||||
logger.info(e.getLocalizedMessage());
|
||||
}
|
||||
PoolManagerConfig poolManagerConfig;
|
||||
String remoteTemplateFile;
|
||||
ArrayList<ProjectSetup> availableProjectConfigurations = new ArrayList<>();
|
||||
|
||||
logger.debug("SAIDescriptorJAXB: " + saiDescriptorJAXB);
|
||||
if (saiDescriptorJAXB != null && saiDescriptorJAXB.getAvailableprojectconfiguration() != null
|
||||
&& !saiDescriptorJAXB.getAvailableprojectconfiguration().isEmpty()) {
|
||||
|
||||
ProjectSupportType type;
|
||||
|
||||
for (AvailableProjectConfigJAXB availableProjectConfigJAXB : saiDescriptorJAXB
|
||||
.getAvailableprojectconfiguration()) {
|
||||
type = ProjectSupportType.valueFromLabel(availableProjectConfigJAXB.getSupport());
|
||||
if (type != null) {
|
||||
availableProjectConfigurations
|
||||
.add(new ProjectSetup(availableProjectConfigJAXB.getLanguage(), type));
|
||||
|
||||
}
|
||||
if (saiDescriptorJAXB != null) {
|
||||
if (saiDescriptorJAXB.getPoolmanager() != null) {
|
||||
PoolManagerJAXB poolManagerJAXB = saiDescriptorJAXB.getPoolmanager();
|
||||
poolManagerConfig = new PoolManagerConfig(poolManagerJAXB.isEnable());
|
||||
} else {
|
||||
logger.info("PoolManager disabled for scope: " + scope);
|
||||
poolManagerConfig = new PoolManagerConfig(false);
|
||||
}
|
||||
|
||||
if(saiDescriptorJAXB.getRemotetemplatefile()!=null&&!saiDescriptorJAXB.getRemotetemplatefile().isEmpty()){
|
||||
remoteTemplateFile = saiDescriptorJAXB.getRemotetemplatefile();
|
||||
} else {
|
||||
remoteTemplateFile = Constants.REMOTE_TEMPLATE_FILE;
|
||||
}
|
||||
|
||||
if (saiDescriptorJAXB.getAvailableprojectconfiguration() != null
|
||||
&& !saiDescriptorJAXB.getAvailableprojectconfiguration().isEmpty()) {
|
||||
|
||||
ProjectSupportType type;
|
||||
|
||||
for (AvailableProjectConfigJAXB availableProjectConfigJAXB : saiDescriptorJAXB
|
||||
.getAvailableprojectconfiguration()) {
|
||||
type = ProjectSupportType.valueFromLabel(availableProjectConfigJAXB.getSupport());
|
||||
if (type != null) {
|
||||
availableProjectConfigurations
|
||||
.add(new ProjectSetup(availableProjectConfigJAXB.getLanguage(), type));
|
||||
|
||||
}
|
||||
}
|
||||
|
||||
} else {
|
||||
logger.info("Available Project Configuration use default configuration, scope: " + scope);
|
||||
|
||||
ProjectSetup r = new ProjectSetup(ProjectLanguageType.R.getId(), ProjectSupportType.REDIT);
|
||||
availableProjectConfigurations.add(r);
|
||||
ProjectSetup rBlackBox = new ProjectSetup(ProjectLanguageType.R_BLACKBOX.getId(),
|
||||
ProjectSupportType.BLACKBOX);
|
||||
availableProjectConfigurations.add(rBlackBox);
|
||||
ProjectSetup java = new ProjectSetup(ProjectLanguageType.JAVA.getId(), ProjectSupportType.BLACKBOX);
|
||||
availableProjectConfigurations.add(java);
|
||||
ProjectSetup knimeWorkflow = new ProjectSetup(ProjectLanguageType.KNIME_WORKFLOW.getId(),
|
||||
ProjectSupportType.BLACKBOX);
|
||||
availableProjectConfigurations.add(knimeWorkflow);
|
||||
ProjectSetup linuxCompiled = new ProjectSetup(ProjectLanguageType.LINUX_COMPILED.getId(),
|
||||
ProjectSupportType.BLACKBOX);
|
||||
availableProjectConfigurations.add(linuxCompiled);
|
||||
ProjectSetup octave = new ProjectSetup(ProjectLanguageType.OCTAVE.getId(),
|
||||
ProjectSupportType.BLACKBOX);
|
||||
availableProjectConfigurations.add(octave);
|
||||
ProjectSetup python = new ProjectSetup(ProjectLanguageType.PYTHON.getId(),
|
||||
ProjectSupportType.BLACKBOX);
|
||||
availableProjectConfigurations.add(python);
|
||||
ProjectSetup windowsCompiled = new ProjectSetup(ProjectLanguageType.WINDOWS_COMPILED.getId(),
|
||||
ProjectSupportType.BLACKBOX);
|
||||
availableProjectConfigurations.add(windowsCompiled);
|
||||
ProjectSetup preInstalled = new ProjectSetup(ProjectLanguageType.PRE_INSTALLED.getId(),
|
||||
ProjectSupportType.BASHEDIT);
|
||||
availableProjectConfigurations.add(preInstalled);
|
||||
}
|
||||
|
||||
} else {
|
||||
logger.info("Production Mode Default");
|
||||
logger.info("SAIDescriptorJAXB use default configuration for scope: " + scope);
|
||||
|
||||
poolManagerConfig = new PoolManagerConfig(false);
|
||||
remoteTemplateFile = Constants.REMOTE_TEMPLATE_FILE;
|
||||
|
||||
ProjectSetup r = new ProjectSetup(ProjectLanguageType.R.getId(), ProjectSupportType.REDIT);
|
||||
availableProjectConfigurations.add(r);
|
||||
ProjectSetup rBlackBox = new ProjectSetup(ProjectLanguageType.R_BLACKBOX.getId(),
|
||||
|
|
@ -101,7 +160,7 @@ public class BuildSAIDescriptor {
|
|||
|
||||
}
|
||||
|
||||
saiDescriptor = new SAIDescriptor(availableProjectConfigurations);
|
||||
saiDescriptor = new SAIDescriptor(poolManagerConfig, remoteTemplateFile, availableProjectConfigurations);
|
||||
|
||||
}
|
||||
|
||||
|
|
|
|||
|
|
@ -0,0 +1,35 @@
|
|||
package org.gcube.portlets.user.statisticalalgorithmsimporter.server.is;
|
||||
|
||||
import javax.xml.bind.annotation.XmlAccessType;
|
||||
import javax.xml.bind.annotation.XmlAccessorType;
|
||||
import javax.xml.bind.annotation.XmlElement;
|
||||
import javax.xml.bind.annotation.XmlRootElement;
|
||||
|
||||
/**
|
||||
*
|
||||
* @author Giancarlo Panichi
|
||||
*
|
||||
*
|
||||
*/
|
||||
|
||||
@XmlRootElement(name = "poolmanager")
|
||||
@XmlAccessorType(XmlAccessType.FIELD)
|
||||
public class PoolManagerJAXB {
|
||||
|
||||
@XmlElement(name = "enable")
|
||||
private boolean enable;
|
||||
|
||||
public boolean isEnable() {
|
||||
return enable;
|
||||
}
|
||||
|
||||
public void setEnable(boolean enable) {
|
||||
this.enable = enable;
|
||||
}
|
||||
|
||||
@Override
|
||||
public String toString() {
|
||||
return "PoolManagerJAXB [enable=" + enable + "]";
|
||||
}
|
||||
|
||||
}
|
||||
|
|
@ -19,9 +19,31 @@ import javax.xml.bind.annotation.XmlRootElement;
|
|||
@XmlAccessorType(XmlAccessType.FIELD)
|
||||
public class SAIDescriptorJAXB {
|
||||
|
||||
@XmlElement(name = "poolmanager")
|
||||
private PoolManagerJAXB poolmanager;
|
||||
|
||||
@XmlElement(name = "remotetemplatefile")
|
||||
private String remotetemplatefile;
|
||||
|
||||
@XmlElement(name = "availableprojectconfiguration")
|
||||
private List<AvailableProjectConfigJAXB> availableprojectconfiguration = new ArrayList<>();
|
||||
|
||||
public PoolManagerJAXB getPoolmanager() {
|
||||
return poolmanager;
|
||||
}
|
||||
|
||||
public void setPoolmanager(PoolManagerJAXB poolmanager) {
|
||||
this.poolmanager = poolmanager;
|
||||
}
|
||||
|
||||
public String getRemotetemplatefile() {
|
||||
return remotetemplatefile;
|
||||
}
|
||||
|
||||
public void setRemotetemplatefile(String remotetemplatefile) {
|
||||
this.remotetemplatefile = remotetemplatefile;
|
||||
}
|
||||
|
||||
public List<AvailableProjectConfigJAXB> getAvailableprojectconfiguration() {
|
||||
return availableprojectconfiguration;
|
||||
}
|
||||
|
|
@ -32,7 +54,8 @@ public class SAIDescriptorJAXB {
|
|||
|
||||
@Override
|
||||
public String toString() {
|
||||
return "SAIDescriptorJAXB [availableprojectconfiguration=" + availableprojectconfiguration + "]";
|
||||
return "SAIDescriptorJAXB [poolmanager=" + poolmanager + ", remotetemplatefile=" + remotetemplatefile
|
||||
+ ", availableprojectconfiguration=" + availableprojectconfiguration + "]";
|
||||
}
|
||||
|
||||
}
|
||||
|
|
|
|||
|
|
@ -26,27 +26,35 @@ public class DataMinerPoolManager {
|
|||
private static Logger logger = LoggerFactory.getLogger(DataMinerPoolManager.class);
|
||||
private String serverUrl;
|
||||
private ServiceCredentials serviceCredentials;
|
||||
|
||||
|
||||
public DataMinerPoolManager(ServiceCredentials serviceCredentials) throws StatAlgoImporterServiceException {
|
||||
this.serviceCredentials=serviceCredentials;
|
||||
this.serviceCredentials = serviceCredentials;
|
||||
serverUrl = InformationSystemUtils.retrieveDataMinerPoolManager(serviceCredentials.getScope());
|
||||
}
|
||||
|
||||
public String deployAlgorithm(InfoData infoData,
|
||||
ItemDescription codeJarAdminCopy) throws StatAlgoImporterServiceException {
|
||||
String operationId = sendRequest(infoData, codeJarAdminCopy, serverUrl);
|
||||
public String deployAlgorithm(InfoData infoData, ItemDescription codeJarAdminCopy)
|
||||
throws StatAlgoImporterServiceException {
|
||||
String operationId = sendRequest(infoData, codeJarAdminCopy);
|
||||
return operationId;
|
||||
}
|
||||
|
||||
public String monitorAlgorithmDeploy(String operationId) throws StatAlgoImporterServiceException {
|
||||
String deployStatus = deployStatus(serverUrl, operationId);
|
||||
public String getDeployOperationLogs(String operationId) throws StatAlgoImporterServiceException {
|
||||
String logs = retrieveDeployOperationLogs(operationId);
|
||||
return logs;
|
||||
}
|
||||
|
||||
public String getDeployOperationLogsLink(String operationId) throws StatAlgoImporterServiceException {
|
||||
String logsLink = retrieveDeployOperationLogsLink(operationId);
|
||||
return logsLink;
|
||||
}
|
||||
|
||||
public String getDeployOperationStatus(String operationId) throws StatAlgoImporterServiceException {
|
||||
String deployStatus = retrieveDeployOperationStatus(operationId);
|
||||
return deployStatus;
|
||||
}
|
||||
|
||||
|
||||
|
||||
private String sendRequest(InfoData infoData,
|
||||
ItemDescription codeJarAdminCopy, String serverUrl) throws StatAlgoImporterServiceException {
|
||||
private String sendRequest(InfoData infoData, ItemDescription codeJarAdminCopy)
|
||||
throws StatAlgoImporterServiceException {
|
||||
logger.info("Send request to DataMinerPoolManager: " + serverUrl);
|
||||
/*
|
||||
* http://node2-d-d4s.d4science.org:8080/dataminer-pool-manager-2.0.0-
|
||||
|
|
@ -103,18 +111,17 @@ public class DataMinerPoolManager {
|
|||
}
|
||||
}
|
||||
|
||||
private String deployStatus(String serverUrl, String operationId)
|
||||
throws StatAlgoImporterServiceException {
|
||||
private String retrieveDeployOperationStatus(String operationId) throws StatAlgoImporterServiceException {
|
||||
logger.info("Send monitor request to DataMinerPoolManager: " + serverUrl);
|
||||
/*
|
||||
*
|
||||
* http://node2-d-d4s.d4science.org:8080/dataminer-pool-manager-2.0.0-
|
||||
* SNAPSHOT/api/log?
|
||||
* gcube-token=708e7eb8-11a7-4e9a-816b-c9ed7e7e99fe-98187548
|
||||
* &logUrl=426c8e35-a624-4710-b612-c90929c32c27
|
||||
* SNAPSHOT/api/monitor? gcube-token=.... &logUrl=opId
|
||||
*
|
||||
*/
|
||||
|
||||
try {
|
||||
String requestUrl = serverUrl + "/log?gcube-token=" + serviceCredentials.getToken() + "&logUrl="
|
||||
String requestUrl = serverUrl + "/monitor?gcube-token=" + serviceCredentials.getToken() + "&logUrl="
|
||||
+ operationId;
|
||||
logger.debug("DataMinerPoolManager monitor request=" + requestUrl);
|
||||
|
||||
|
|
@ -152,4 +159,65 @@ public class DataMinerPoolManager {
|
|||
|
||||
}
|
||||
|
||||
private String retrieveDeployOperationLogs(String operationId) throws StatAlgoImporterServiceException {
|
||||
logger.info("Send logs info request to DataMinerPoolManager: " + serverUrl);
|
||||
/*
|
||||
* http://node2-d-d4s.d4science.org:8080/dataminer-pool-manager-2.0.0-
|
||||
* SNAPSHOT/api/log?
|
||||
* gcube-token=708e7eb8-11a7-4e9a-816b-c9ed7e7e99fe-98187548
|
||||
* &logUrl=426c8e35-a624-4710-b612-c90929c32c27
|
||||
*/
|
||||
|
||||
try {
|
||||
String requestUrl = serverUrl + "/log?gcube-token=" + serviceCredentials.getToken() + "&logUrl="
|
||||
+ operationId;
|
||||
logger.debug("DataMinerPoolManager logs request=" + requestUrl);
|
||||
|
||||
URL urlObj = new URL(requestUrl);
|
||||
HttpURLConnection connection = (HttpURLConnection) urlObj.openConnection();
|
||||
connection.setRequestMethod("GET");
|
||||
connection.setDoOutput(true);
|
||||
|
||||
InputStream is = connection.getInputStream();
|
||||
BufferedReader reader = new BufferedReader(new InputStreamReader(is));
|
||||
String line = null;
|
||||
StringBuffer operationStatus = new StringBuffer();
|
||||
logger.info("DataMinerPoolManager response: ");
|
||||
while ((line = reader.readLine()) != null) {
|
||||
logger.info(line);
|
||||
operationStatus.append(line);
|
||||
}
|
||||
|
||||
return operationStatus.toString();
|
||||
} catch (MalformedURLException e) {
|
||||
logger.error("DataMinerPoolManager problem retrieving operation logs URL seems to be invalid: "
|
||||
+ e.getLocalizedMessage(), e);
|
||||
throw new StatAlgoImporterServiceException(
|
||||
"DataMinerPoolManager problem retrieving operation logs URL seems to be invalid: "
|
||||
+ e.getLocalizedMessage(),
|
||||
e);
|
||||
} catch (IOException e) {
|
||||
logger.error("DataMinerPoolManager problem retrieving operation logs: " + e.getLocalizedMessage(), e);
|
||||
throw new StatAlgoImporterServiceException(
|
||||
"DataMinerPoolManager problem retrieving operation logs: " + e.getLocalizedMessage(), e);
|
||||
|
||||
} catch (Throwable e) {
|
||||
logger.error("DataMinerPoolManager error occured retrieving operation logs: " + e.getLocalizedMessage(), e);
|
||||
throw new StatAlgoImporterServiceException(
|
||||
"DataMinerPoolManager error occured retrieving operation logs: " + e.getLocalizedMessage(), e);
|
||||
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
private String retrieveDeployOperationLogsLink(String operationId) throws StatAlgoImporterServiceException {
|
||||
logger.info("Retrieve deploy operation logs link for: [operationId="+operationId+", server=" + serverUrl+"]");
|
||||
|
||||
String requestUrl = serverUrl + "/log?gcube-token=" + serviceCredentials.getToken() + "&logUrl=" + operationId;
|
||||
logger.debug("DataMinerPoolManager monitor request=" + requestUrl);
|
||||
|
||||
return requestUrl;
|
||||
|
||||
}
|
||||
|
||||
}
|
||||
|
|
|
|||
|
|
@ -122,6 +122,11 @@ public class DeploySave {
|
|||
return codeJarAdminCopy;
|
||||
}
|
||||
|
||||
public InfoData getInfoData() {
|
||||
return infoData;
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
}
|
||||
|
|
|
|||
|
|
@ -42,5 +42,8 @@ public class Constants {
|
|||
public static final String PRE_INSTALLED = "Pre-Installed";
|
||||
public static final String REMOTE_TEMPLATE_FILE = "http://svn.research-infrastructures.eu/public/d4science/gcube/trunk/data-analysis/RConfiguration/RD4SFunctions/SAITemplateForExternalInvocation.R";
|
||||
|
||||
// DataMiner Pool Manager
|
||||
public static final int CLIENT_MONITOR_PERIODMILLIS = 2000;
|
||||
|
||||
|
||||
}
|
||||
|
|
|
|||
|
|
@ -0,0 +1,38 @@
|
|||
package org.gcube.portlets.user.statisticalalgorithmsimporter.shared.descriptor;
|
||||
|
||||
import java.io.Serializable;
|
||||
|
||||
/**
|
||||
*
|
||||
* @author Giancarlo Panichi
|
||||
*
|
||||
*
|
||||
*/
|
||||
public class PoolManagerConfig implements Serializable {
|
||||
|
||||
private static final long serialVersionUID = 5010071163308091807L;
|
||||
private boolean enable;
|
||||
|
||||
public PoolManagerConfig() {
|
||||
|
||||
}
|
||||
|
||||
public PoolManagerConfig(boolean enable) {
|
||||
super();
|
||||
this.enable = enable;
|
||||
}
|
||||
|
||||
public boolean isEnable() {
|
||||
return enable;
|
||||
}
|
||||
|
||||
public void setEnable(boolean enable) {
|
||||
this.enable = enable;
|
||||
}
|
||||
|
||||
@Override
|
||||
public String toString() {
|
||||
return "PoolManagerConfig [enable=" + enable + "]";
|
||||
}
|
||||
|
||||
}
|
||||
|
|
@ -12,18 +12,39 @@ import java.util.ArrayList;
|
|||
public class SAIDescriptor implements Serializable {
|
||||
|
||||
private static final long serialVersionUID = 8083363401840308985L;
|
||||
private PoolManagerConfig poolManagerConfig;
|
||||
private String remoteTemplateFile;
|
||||
private ArrayList<ProjectSetup> availableProjectConfigurations;
|
||||
|
||||
public SAIDescriptor() {
|
||||
super();
|
||||
}
|
||||
|
||||
public SAIDescriptor(ArrayList<ProjectSetup> availableProjectConfigurations) {
|
||||
public SAIDescriptor(PoolManagerConfig poolManagerConfig, String remoteTemplateFile,
|
||||
ArrayList<ProjectSetup> availableProjectConfigurations) {
|
||||
super();
|
||||
this.poolManagerConfig = poolManagerConfig;
|
||||
this.remoteTemplateFile = remoteTemplateFile;
|
||||
this.availableProjectConfigurations = availableProjectConfigurations;
|
||||
|
||||
}
|
||||
|
||||
public PoolManagerConfig getPoolManagerConfig() {
|
||||
return poolManagerConfig;
|
||||
}
|
||||
|
||||
public void setPoolManagerConfig(PoolManagerConfig poolManagerConfig) {
|
||||
this.poolManagerConfig = poolManagerConfig;
|
||||
}
|
||||
|
||||
public String getRemoteTemplateFile() {
|
||||
return remoteTemplateFile;
|
||||
}
|
||||
|
||||
public void setRemoteTemplateFile(String remoteTemplateFile) {
|
||||
this.remoteTemplateFile = remoteTemplateFile;
|
||||
}
|
||||
|
||||
public ArrayList<ProjectSetup> getAvailableProjectConfigurations() {
|
||||
return availableProjectConfigurations;
|
||||
}
|
||||
|
|
@ -34,7 +55,8 @@ public class SAIDescriptor implements Serializable {
|
|||
|
||||
@Override
|
||||
public String toString() {
|
||||
return "SAIDescriptor [availableProjectConfigurations=" + availableProjectConfigurations + "]";
|
||||
return "SAIDescriptor [poolManagerConfig=" + poolManagerConfig + ", remoteTemplateFile=" + remoteTemplateFile
|
||||
+ ", availableProjectConfigurations=" + availableProjectConfigurations + "]";
|
||||
}
|
||||
|
||||
}
|
||||
|
|
|
|||
|
|
@ -8,6 +8,7 @@ package org.gcube.portlets.user.statisticalalgorithmsimporter.shared.session;
|
|||
*/
|
||||
public class SessionConstants {
|
||||
|
||||
public static final String SAI_DESCRIPTOR="SAI_DESCRIPTOR";
|
||||
public static final String FILE_UPLOAD_MONITOR="FILE_UPLOAD_MONITOR";
|
||||
public static final String IMPORT_CODE_FILE_UPLOAD_SESSION = "IMPORT_CODE_FILE_UPLOAD_SESSION";
|
||||
public static final String PROJECT = "PROJECT";
|
||||
|
|
|
|||
|
|
@ -2,5 +2,4 @@
|
|||
{ "user":"gianpaolo.coro", "surname":"Coro", "name":"Gianpaolo"},
|
||||
{ "user":"scarponi", "surname":"Scarponi", "name":"Paolo"},
|
||||
{ "user":"lucio.lelii", "surname":"Lelii", "name":"Lucio"},
|
||||
{ "user":"statistical.manager", "surname":"Manager", "name":"Statistical"},
|
||||
{ "user":"roberto.cirillo", "surname":"Cirillo", "name":"Roberto"} ] }
|
||||
|
|
@ -8,6 +8,7 @@ import java.util.List;
|
|||
import javax.xml.bind.JAXBContext;
|
||||
|
||||
import org.gcube.portlets.user.statisticalalgorithmsimporter.server.is.AvailableProjectConfigJAXB;
|
||||
import org.gcube.portlets.user.statisticalalgorithmsimporter.server.is.PoolManagerJAXB;
|
||||
import org.gcube.portlets.user.statisticalalgorithmsimporter.server.is.SAIDescriptorJAXB;
|
||||
import org.gcube.portlets.user.statisticalalgorithmsimporter.shared.Constants;
|
||||
import org.gcube.portlets.user.statisticalalgorithmsimporter.shared.descriptor.ProjectLanguageType;
|
||||
|
|
@ -34,6 +35,14 @@ public class ISResourceTest extends TestCase {
|
|||
StringWriter sw = new StringWriter();
|
||||
|
||||
SAIDescriptorJAXB saiDescriptor = new SAIDescriptorJAXB();
|
||||
|
||||
PoolManagerJAXB poolManagerJAXB=new PoolManagerJAXB();
|
||||
poolManagerJAXB.setEnable(true);
|
||||
saiDescriptor.setPoolmanager(poolManagerJAXB);
|
||||
|
||||
saiDescriptor.setRemotetemplatefile(Constants.REMOTE_TEMPLATE_FILE);
|
||||
|
||||
|
||||
List<AvailableProjectConfigJAXB> list = new ArrayList<>();
|
||||
AvailableProjectConfigJAXB a1 = new AvailableProjectConfigJAXB();
|
||||
a1.setLanguage(ProjectLanguageType.R.getId());
|
||||
|
|
@ -48,11 +57,14 @@ public class ISResourceTest extends TestCase {
|
|||
a1.setSupport(ProjectSupportType.BLACKBOX.getId());
|
||||
list.add(a1);
|
||||
saiDescriptor.setAvailableprojectconfiguration(list);
|
||||
|
||||
jaxbContext.createMarshaller().marshal(saiDescriptor, sw);
|
||||
logger.debug(sw.toString());
|
||||
|
||||
SAIDescriptorJAXB descr = (SAIDescriptorJAXB) jaxbContext.createUnmarshaller()
|
||||
.unmarshal(new StringReader(sw.toString()));
|
||||
logger.debug("SAIDescriptor: " + descr);
|
||||
|
||||
assertTrue("Success", true);
|
||||
} catch (Throwable e) {
|
||||
logger.error(e.getLocalizedMessage(), e);
|
||||
|
|
|
|||
6
test.log
6
test.log
|
|
@ -31,3 +31,9 @@ java.lang.ClassCastException: org.gcube.portlets.user.statisticalalgorithmsimpor
|
|||
2017-06-14 14:42:05 DEBUG ISResourceTest:51 - SAIDescriptor: SAIDescriptorJAXB [availableprojectconfiguration=[AvailableProjectConfigJAXB [language=R, support=REditor], AvailableProjectConfigJAXB [language=Linux, support=BlackBox], AvailableProjectConfigJAXB [language=Octave, support=BlackBox]]]
|
||||
2017-06-14 14:47:07 DEBUG ISResourceTest:48 - <?xml version="1.0" encoding="UTF-8" standalone="yes"?><saidescriptor><availableprojectconfiguration><language>R</language><support>REditor</support></availableprojectconfiguration><availableprojectconfiguration><language>Linux</language><support>BlackBox</support></availableprojectconfiguration><availableprojectconfiguration><language>Octave</language><support>BlackBox</support></availableprojectconfiguration></saidescriptor>
|
||||
2017-06-14 14:47:07 DEBUG ISResourceTest:51 - SAIDescriptor: SAIDescriptorJAXB [availableprojectconfiguration=[AvailableProjectConfigJAXB [language=R, support=REditor], AvailableProjectConfigJAXB [language=Linux, support=BlackBox], AvailableProjectConfigJAXB [language=Octave, support=BlackBox]]]
|
||||
2017-07-17 12:50:38 DEBUG ISResourceTest:59 - <?xml version="1.0" encoding="UTF-8" standalone="yes"?><saidescriptor><poolmanager><enable>true</enable></poolmanager><availableprojectconfiguration><language>R</language><support>REdit</support></availableprojectconfiguration><availableprojectconfiguration><language>Linux-compiled</language><support>BlackBox</support></availableprojectconfiguration><availableprojectconfiguration><language>Octave</language><support>BlackBox</support></availableprojectconfiguration></saidescriptor>
|
||||
2017-07-17 12:50:39 DEBUG ISResourceTest:63 - SAIDescriptor: SAIDescriptorJAXB [poolmanager=PoolManagerJAXB [enable=true], availableprojectconfiguration=[AvailableProjectConfigJAXB [language=R, support=REdit], AvailableProjectConfigJAXB [language=Linux-compiled, support=BlackBox], AvailableProjectConfigJAXB [language=Octave, support=BlackBox]]]
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2017-07-17 12:51:01 DEBUG ISResourceTest:59 - <?xml version="1.0" encoding="UTF-8" standalone="yes"?><saidescriptor><poolmanager><enable>true</enable></poolmanager><availableprojectconfiguration><language>R</language><support>REdit</support></availableprojectconfiguration><availableprojectconfiguration><language>Linux-compiled</language><support>BlackBox</support></availableprojectconfiguration><availableprojectconfiguration><language>Octave</language><support>BlackBox</support></availableprojectconfiguration></saidescriptor>
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2017-07-17 12:51:01 DEBUG ISResourceTest:63 - SAIDescriptor: SAIDescriptorJAXB [poolmanager=PoolManagerJAXB [enable=true], availableprojectconfiguration=[AvailableProjectConfigJAXB [language=R, support=REdit], AvailableProjectConfigJAXB [language=Linux-compiled, support=BlackBox], AvailableProjectConfigJAXB [language=Octave, support=BlackBox]]]
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||||
2017-07-17 18:29:07 DEBUG ISResourceTest:62 - <?xml version="1.0" encoding="UTF-8" standalone="yes"?><saidescriptor><poolmanager><enable>true</enable></poolmanager><remotetemplatefile>http://svn.research-infrastructures.eu/public/d4science/gcube/trunk/data-analysis/RConfiguration/RD4SFunctions/SAITemplateForExternalInvocation.R</remotetemplatefile><availableprojectconfiguration><language>R</language><support>REdit</support></availableprojectconfiguration><availableprojectconfiguration><language>Linux-compiled</language><support>BlackBox</support></availableprojectconfiguration><availableprojectconfiguration><language>Octave</language><support>BlackBox</support></availableprojectconfiguration></saidescriptor>
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||||
2017-07-17 18:29:07 DEBUG ISResourceTest:66 - SAIDescriptor: SAIDescriptorJAXB [poolmanager=PoolManagerJAXB [enable=true], remotetemplatefile=http://svn.research-infrastructures.eu/public/d4science/gcube/trunk/data-analysis/RConfiguration/RD4SFunctions/SAITemplateForExternalInvocation.R, availableprojectconfiguration=[AvailableProjectConfigJAXB [language=R, support=REdit], AvailableProjectConfigJAXB [language=Linux-compiled, support=BlackBox], AvailableProjectConfigJAXB [language=Octave, support=BlackBox]]]
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Reference in New Issue