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software-versions-processor-lib
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Adding variables management

This commit is contained in:
Luca Frosini 2023-01-11 16:33:40 +01:00
parent 46738f588d
commit d93351144d
12 changed files with 892 additions and 779 deletions
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59
src/main/java/org/gcube/common/software/analyser/SoftwareConceptAnalyser.java
View File

@ -1,14 +1,19 @@
package org.gcube.common.software.analyser;
import java.io.File;
import java.text.SimpleDateFormat;
import java.util.List;
import java.util.Iterator;
import java.util.Set;
import java.util.concurrent.TimeUnit;
import org.gcube.com.fasterxml.jackson.core.JsonProcessingException;
import org.gcube.com.fasterxml.jackson.databind.JsonNode;
import org.gcube.com.fasterxml.jackson.databind.ObjectMapper;
import org.gcube.com.fasterxml.jackson.databind.SerializationFeature;
import org.gcube.com.fasterxml.jackson.databind.node.ArrayNode;
import org.gcube.com.fasterxml.jackson.databind.node.ObjectNode;
import org.gcube.common.software.model.SoftwareConcept;
import org.gcube.common.software.model.SoftwareVersion;
import org.gcube.common.software.model.Variables;
import org.gcube.common.software.utils.Utils;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
@ -22,45 +27,49 @@ public class SoftwareConceptAnalyser {
public static final String CONCEPT_FILENAME_EXTENSION = ".json";
protected ObjectMapper objectMapper;
protected JsonNode jsonNode;
public SoftwareConceptAnalyser() {
this.objectMapper = new ObjectMapper();
SimpleDateFormat sdf = new SimpleDateFormat(SoftwareVersion.DATETIME_PATTERN);
this.objectMapper.setDateFormat(sdf);
this.objectMapper.configure(SerializationFeature.INDENT_OUTPUT, true);
public SoftwareConceptAnalyser(File jsonFile) throws Exception {
this.objectMapper = Utils.getObjectMapper();
this.jsonNode = objectMapper.readTree(jsonFile);
}
public SoftwareConcept getSoftwareConcept(File jsonFile) throws Exception {
SoftwareConcept softwareConcept = objectMapper.readValue(jsonFile, SoftwareConcept.class);
return softwareConcept;
public SoftwareConceptAnalyser(String json) throws Exception {
this.objectMapper = Utils.getObjectMapper();
this.jsonNode = objectMapper.readTree(json);
}
public SoftwareConcept getSoftwareConcept(String json) throws Exception {
SoftwareConcept softwareConcept = objectMapper.readValue(json, SoftwareConcept.class);
return softwareConcept;
protected JsonNode actualize(JsonNode version) throws Exception {
Variables variables = objectMapper.treeToValue(version, Variables.class);
Set<String> missingVariables = variables.parse();
if(missingVariables.size()>0) {
throw new Exception("");
}
JsonNode swVersion = objectMapper.convertValue(variables.getProperties(), JsonNode.class);
return swVersion;
}
public void analyse(SoftwareConcept softwareConcept) throws Exception {
public void analyse() throws Exception {
JsonNode concept = jsonNode.get("concept");
SoftwareConcept softwareConcept = objectMapper.treeToValue(concept, SoftwareConcept.class);
ArrayNode versions = (ArrayNode) jsonNode.get("versions");
String name = softwareConcept.getName();
SoftwareVersion previous = null;
List<SoftwareVersion> depositionVersions = softwareConcept.getDepositionVersions();
for(int i=0; i<depositionVersions.size(); i++) {
for(int i=0; i<versions.size(); i++) {
JsonNode version = Utils.merge(concept, versions.get(i));
version = actualize(version);
SoftwareVersion softwareVersion = objectMapper.treeToValue(version, SoftwareVersion.class);
SoftwareVersion softwareVersion = depositionVersions.get(i);
softwareVersion.setSoftwareConcept(softwareConcept);
softwareVersion.setPrevious(previous);
if((i+1)<depositionVersions.size()) {
softwareVersion.setNext(depositionVersions.get(i+1));
}
previous.setNext(softwareVersion);
logger.trace("Going to process {} {} (previous version {})",
name, softwareVersion.getVersion(),
softwareVersion.getPrevious()!=null ? softwareVersion.getPrevious().getVersion(): null);
SoftwareVersionAnalyser softwareVersionAnalyser = new SoftwareVersionAnalyser(objectMapper, softwareVersion);
SoftwareVersionAnalyser softwareVersionAnalyser = new SoftwareVersionAnalyser(softwareVersion);
softwareVersionAnalyser.setFirst(i==0);
softwareVersionAnalyser.analyse();

6
src/main/java/org/gcube/common/software/analyser/SoftwareVersionAnalyser.java
View File

@ -6,6 +6,7 @@ import org.gcube.com.fasterxml.jackson.databind.ObjectMapper;
import org.gcube.common.software.model.SoftwareVersion;
import org.gcube.common.software.process.export.SoftwareVersionExporter;
import org.gcube.common.software.process.publish.SoftwareVersionPublisher;
import org.gcube.common.software.utils.Utils;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
@ -16,12 +17,10 @@ public class SoftwareVersionAnalyser {
private static final Logger logger = LoggerFactory.getLogger(SoftwareConceptAnalyser.class);
protected ObjectMapper objectMapper;
protected SoftwareVersion softwareVersion;
protected boolean first;
public SoftwareVersionAnalyser(ObjectMapper objectMapper, SoftwareVersion softwareVersion) {
this.objectMapper = objectMapper;
public SoftwareVersionAnalyser(SoftwareVersion softwareVersion) {
this.softwareVersion = softwareVersion;
}
@ -34,6 +33,7 @@ public class SoftwareVersionAnalyser {
}
public void analyse() throws Exception {
ObjectMapper objectMapper = Utils.getObjectMapper();
logger.debug("SoftwareVersion: {}", objectMapper.writeValueAsString(softwareVersion));
List<SoftwareVersionPublisher> svps = SoftwareVersionPublisher.getPublishers();

130
src/main/java/org/gcube/common/software/model/SoftwareConcept.java
View File

@ -1,11 +1,14 @@
package org.gcube.common.software.model;
import java.net.URL;
import java.util.List;
import java.util.Set;
import org.gcube.com.fasterxml.jackson.annotation.JsonFormat;
import org.gcube.com.fasterxml.jackson.annotation.JsonIgnore;
import org.gcube.com.fasterxml.jackson.annotation.JsonProperty;
import org.gcube.com.fasterxml.jackson.databind.JsonNode;
import org.gcube.com.fasterxml.jackson.databind.node.ArrayNode;
/**
* @author Luca Frosini (ISTI - CNR)
@ -13,21 +16,52 @@ import org.gcube.com.fasterxml.jackson.databind.JsonNode;
public class SoftwareConcept {
public static final String NAME_PROPERTY_NAME = "name";
public static final String GROUP_PROPERTY_NAME = "group";
public static final String TITLE_PROPERTY_NAME = "title";
public static final String LICENSE_PROPERTY_NAME = "license";
public static final String KEYWORDS_PROPERTY_NAME = "keywords";
public static final String DESCRIPTION_PROPERTY_NAME = "description";
public static final String PUBLISH_PROPERTY_NAME = "publish";
public static final String EXPORT_PROPERTY_NAME = "export";
public static final String AUTHORS_PROPERTY_NAME = "authors";
public static final String FILES_PROPERTY_NAME = "files";
public static final String CODE_LOCATION_PROPERTY_NAME = "code_location";
public static final String CODE_LOCATION_TEXT_PROPERTY_NAME = "code_location_text";
public static final String VERSIONS_PROPERTY_NAME = "versions";
public static final String METADATA_PROPERTY_NAME = "metadata";
public static final String DOI_URL_PROPERTY_NAME = "doi_url";
public static final String GRANTS_PROPERTY_NAME = "grants";
public static final String PUBLISH_PROPERTY_NAME = "publish";
public static final String EXPORT_PROPERTY_NAME = "export";
@JsonProperty(NAME_PROPERTY_NAME)
protected String name;
@JsonProperty(GROUP_PROPERTY_NAME)
protected String group;
@JsonProperty(TITLE_PROPERTY_NAME)
protected String title;
@JsonProperty(LICENSE_PROPERTY_NAME)
protected JsonNode license;
@JsonProperty(KEYWORDS_PROPERTY_NAME)
protected Set<String> keywords;
@JsonProperty(DESCRIPTION_PROPERTY_NAME)
protected String description;
@JsonProperty(AUTHORS_PROPERTY_NAME)
protected ArrayNode authors;
@JsonProperty(FILES_PROPERTY_NAME)
protected List<SoftwareVersionFile> files;
@JsonProperty(CODE_LOCATION_PROPERTY_NAME)
protected String codeLocation;
@JsonProperty(DOI_URL_PROPERTY_NAME)
protected URL doiURL;
@JsonProperty(AUTHORS_PROPERTY_NAME)
protected JsonNode grants;
@JsonProperty(PUBLISH_PROPERTY_NAME)
@JsonFormat(shape=JsonFormat.Shape.STRING)
protected ElaborationType publish;
@ -36,32 +70,54 @@ public class SoftwareConcept {
@JsonFormat(shape=JsonFormat.Shape.STRING)
protected ElaborationType export;
@JsonProperty(FILES_PROPERTY_NAME)
protected List<SoftwareVersionFile> files;
@JsonProperty(CODE_LOCATION_PROPERTY_NAME)
protected String codeLocation;
@JsonProperty(CODE_LOCATION_TEXT_PROPERTY_NAME)
protected String codeLocationAdditionalDescription;
@JsonProperty(VERSIONS_PROPERTY_NAME)
protected List<SoftwareVersion> depositionVersions;
@JsonProperty(METADATA_PROPERTY_NAME)
protected JsonNode metadata;
@JsonIgnore
protected Variables variables;
public String getName() {
return name;
}
public String getGroup() {
return group;
}
public String getTitle() {
return title;
}
public JsonNode getLicense() {
return license;
}
public Set<String> getKeywords() {
return keywords;
}
public String getDescription() {
return description;
}
public ArrayNode getAuthors() {
return authors;
}
public List<SoftwareVersionFile> getFiles() {
return files;
}
public String getCodeLocation() {
return codeLocation;
}
public URL getDOIURL() {
return doiURL;
}
public void setDOIURL(URL doiURL) {
this.doiURL = doiURL;
}
public JsonNode getGrants() {
return grants;
}
public ElaborationType getPublish() {
return publish;
}
@ -69,33 +125,5 @@ public class SoftwareConcept {
public ElaborationType getExport() {
return export;
}
public List<SoftwareVersionFile> getFiles() {
return files;
}
public String getCodeLocation() {
return codeLocation;
}
public String getCodeLocationAdditionalDescription() {
return codeLocationAdditionalDescription;
}
public List<SoftwareVersion> getDepositionVersions() {
return depositionVersions;
}
public JsonNode getMetadata() {
return metadata;
}
@JsonIgnore
public Variables getVariables() {
if(variables==null) {
}
return variables;
}
}

316
src/main/java/org/gcube/common/software/model/SoftwareVersion.java
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@ -1,57 +1,26 @@
package org.gcube.common.software.model;
import java.io.StringWriter;
import java.net.MalformedURLException;
import java.net.URL;
import java.text.SimpleDateFormat;
import java.util.ArrayList;
import java.util.Date;
import java.util.Iterator;
import java.util.List;
import org.gcube.com.fasterxml.jackson.annotation.JsonFormat;
import org.gcube.com.fasterxml.jackson.annotation.JsonGetter;
import org.gcube.com.fasterxml.jackson.annotation.JsonIgnore;
import org.gcube.com.fasterxml.jackson.annotation.JsonInclude;
import org.gcube.com.fasterxml.jackson.annotation.JsonInclude.Include;
import org.gcube.com.fasterxml.jackson.annotation.JsonProperty;
import org.gcube.com.fasterxml.jackson.annotation.JsonSetter;
import org.gcube.com.fasterxml.jackson.databind.JsonNode;
import org.gcube.com.fasterxml.jackson.databind.node.ArrayNode;
import org.gcube.com.fasterxml.jackson.databind.node.ObjectNode;
import org.gcube.com.fasterxml.jackson.databind.node.TextNode;
import org.gcube.common.software.utils.Utils;
/**
* @author Luca Frosini (ISTI - CNR)
*/
public class SoftwareVersion {
/**
* DateTime Pattern to be used to serialize Dates
*/
public static final String DATETIME_PATTERN = "yyyy-MM-dd";
public static String getDateAsString(Date date) {
SimpleDateFormat simpleDateFormat = new SimpleDateFormat(DATETIME_PATTERN);
return simpleDateFormat.format(date);
}
public class SoftwareVersion extends SoftwareConcept {
public static final String VERSION_PROPERTY_NAME = "version";
public static final String DATE_PROPERTY_NAME = "date";
public static final String FILES_PROPERTY_NAME = "files";
public static final String GCUBE_RELEASE_VERSION_PROPERTY_NAME = "gcube_release_version";
public static final String GCUBE_RELEASE_TICKET_PROPERTY_NAME = "gcube_release_ticket";
public static final String CODE_LOCATION_PROPERTY_NAME = "code_location";
public static final String CONCEPT_DOI_URL_PROPERTY_NAME = "concept_doi_url";
public static final String DOI_URL_PROPERTY_NAME = "doi_url";
public static final String PUBLISH_PROPERTY_NAME = SoftwareConcept.PUBLISH_PROPERTY_NAME;
public static final String EXPORT_PROPERTY_NAME = SoftwareConcept.EXPORT_PROPERTY_NAME;
public static final String METADATA_PROPERTY_NAME = "metadata";
public static final String VERISON_DOI_URL_PROPERTY_NAME = "version_doi_url";
@JsonIgnore
protected SoftwareConcept softwareConcept;
@JsonIgnore
protected SoftwareVersion previous;
@ -65,50 +34,23 @@ public class SoftwareVersion {
protected String version;
@JsonProperty(DATE_PROPERTY_NAME)
@JsonFormat(shape = JsonFormat.Shape.STRING, pattern = SoftwareVersion.DATETIME_PATTERN)
@JsonFormat(shape = JsonFormat.Shape.STRING, pattern = Utils.DATETIME_PATTERN)
protected Date date;
@JsonProperty(FILES_PROPERTY_NAME)
protected List<SoftwareVersionFile> files;
@JsonProperty(GCUBE_RELEASE_VERSION_PROPERTY_NAME)
protected String gCubeReleaseVersion;
@JsonProperty(GCUBE_RELEASE_TICKET_PROPERTY_NAME)
protected URL gCubeReleaseTicket;
@JsonProperty(CODE_LOCATION_PROPERTY_NAME)
protected Object codeLocation;
@JsonProperty(VERISON_DOI_URL_PROPERTY_NAME)
protected URL versionDOIURL;
@JsonProperty(CONCEPT_DOI_URL_PROPERTY_NAME)
protected URL conceptDOIURL;
@JsonProperty(DOI_URL_PROPERTY_NAME)
protected URL doiURL;
@JsonProperty(PUBLISH_PROPERTY_NAME)
protected Boolean publish;
@JsonProperty(EXPORT_PROPERTY_NAME)
protected Boolean export;
@JsonProperty(METADATA_PROPERTY_NAME)
protected JsonNode metadata;
public SoftwareVersion() {
this.newDeposition = false;
}
@JsonIgnore
public SoftwareConcept getSoftwareConcept() {
return softwareConcept;
}
@JsonIgnore
public void setSoftwareConcept(SoftwareConcept softwareConcept) {
this.softwareConcept = softwareConcept;
}
@JsonIgnore
public SoftwareVersion getPrevious() {
return previous;
@ -161,53 +103,6 @@ public class SoftwareVersion {
public void setDate(Date date) {
this.date = date;
}
@JsonIgnore
protected List<SoftwareVersionFile> parseFiles(List<SoftwareVersionFile> filesToParse){
List<SoftwareVersionFile> files = new ArrayList<>();
for(SoftwareVersionFile f : filesToParse) {
SoftwareVersionFile file = new SoftwareVersionFile();
file.setDesiredName(replaceVariables(f.getDesiredName()));
try {
file.setURL(replaceVariables(f.getURL().toString()));
} catch (MalformedURLException e) {
throw new RuntimeException(e);
}
files.add(file);
}
return files;
}
@JsonIgnore
protected void replaceVariablesInfiles(List<SoftwareVersionFile> files) {
for(SoftwareVersionFile file : files) {
file.setDesiredName(replaceVariables(file.getDesiredName()));
try {
file.setURL(replaceVariables(file.getURL().toString()));
} catch (MalformedURLException e) {
throw new RuntimeException(e);
}
}
}
@JsonIgnore
public List<SoftwareVersionFile> getFiles() {
if(files!=null) {
return parseFiles(files);
}
return parseFiles(softwareConcept.getFiles());
}
@JsonGetter(value = FILES_PROPERTY_NAME)
@JsonInclude(Include.NON_NULL)
protected List<SoftwareVersionFile> getFilesForSerialization() {
return files;
}
@JsonSetter(value = FILES_PROPERTY_NAME)
public void setFiles(List<SoftwareVersionFile> files) {
this.files = files;
}
@JsonGetter(value = GCUBE_RELEASE_VERSION_PROPERTY_NAME)
public String getGCubeReleaseVersion() {
@ -229,205 +124,14 @@ public class SoftwareVersion {
this.gCubeReleaseTicket = gCubeReleaseTicket;
}
@JsonIgnore
public URL getCodeLocation() throws MalformedURLException {
if(codeLocation!=null) {
if(codeLocation instanceof Boolean && ((Boolean) codeLocation)==false) {
return null;
}
return new URL(replaceVariables(codeLocation.toString()));
}
return new URL(replaceVariables(softwareConcept.getCodeLocation().toString()));
}
@JsonGetter(value = CODE_LOCATION_PROPERTY_NAME)
@JsonInclude(Include.NON_NULL)
public Object getCodeLocationForSerialization() throws MalformedURLException {
return codeLocation;
}
@JsonSetter(value = CODE_LOCATION_PROPERTY_NAME)
public void setCodeLocation(Object codeLocation) throws Exception {
if(codeLocation instanceof Boolean) {
if(((Boolean) codeLocation)==false) {
this.codeLocation = new Boolean(false);
return;
}else {
throw new RuntimeException(CODE_LOCATION_PROPERTY_NAME + " can only be false or the URL of the code_location");
}
}
this.codeLocation = new URL((String) codeLocation);
}
@JsonGetter(CONCEPT_DOI_URL_PROPERTY_NAME)
@JsonInclude(Include.NON_NULL)
public URL getConceptDOIURL() {
return conceptDOIURL;
}
@JsonIgnore
public void setConceptDOIURL(URL conceptDOIURL) {
this.conceptDOIURL = conceptDOIURL;
}
@JsonSetter(CONCEPT_DOI_URL_PROPERTY_NAME)
public void setConceptDOIURL(String conceptDOIURL) throws MalformedURLException {
try {
this.conceptDOIURL = new URL(conceptDOIURL);
} catch (Exception e) {
this.conceptDOIURL = null;
}
}
@JsonGetter(DOI_URL_PROPERTY_NAME)
public URL getDOIURL() {
return doiURL;
@JsonGetter(VERISON_DOI_URL_PROPERTY_NAME)
public URL getVersionDOIURL() {
return versionDOIURL;
}
@JsonIgnore
public void setDOIURL(URL doiURL) {
this.doiURL = doiURL;
}
@JsonSetter(DOI_URL_PROPERTY_NAME)
public void setDOIURL(String doiURL) throws MalformedURLException {
try {
this.doiURL = new URL(doiURL);
} catch (Exception e) {
this.doiURL = null;
}
}
@JsonIgnore
public Boolean getPublish() {
if(publish!=null) {
return publish;
}
return true;
}
@JsonGetter(PUBLISH_PROPERTY_NAME)
@JsonInclude(Include.NON_NULL)
public Boolean getPublishForSerialization() {
return publish;
}
@JsonSetter(PUBLISH_PROPERTY_NAME)
public void setPublish(Boolean publish) {
this.publish = publish;
}
@JsonIgnore
public Boolean getExport() {
if(export!=null) {
return export;
}
return true;
}
@JsonGetter(EXPORT_PROPERTY_NAME)
@JsonInclude(Include.NON_NULL)
public Boolean getExportForSerialization() {
return export;
}
@JsonSetter(EXPORT_PROPERTY_NAME)
public void setExport(Boolean export) {
this.export = export;
}
@JsonIgnore
protected ObjectNode parseObjectNode(ObjectNode objectNode) {
Iterator<String> iterator = objectNode.fieldNames();
while (iterator.hasNext()) {
String name = iterator.next();
JsonNode jn = objectNode.get(name);
jn = parseJsonNode(jn);
objectNode.replace(name, jn);
}
return objectNode;
}
@JsonIgnore
protected ArrayNode parseArrayNode(ArrayNode arrayNode) {
for(int i=0; i<arrayNode.size(); i++) {
JsonNode jn = arrayNode.get(i);
jn = parseJsonNode(jn);
arrayNode.set(i, jn);
}
return arrayNode;
}
@JsonIgnore
protected JsonNode parseJsonNode(JsonNode jsonNode) {
switch (jsonNode.getNodeType()) {
case OBJECT:
return parseObjectNode((ObjectNode) jsonNode);
case ARRAY:
return parseArrayNode((ArrayNode) jsonNode);
case STRING:
String text = jsonNode.asText();
text = replaceVariables(text);
TextNode textNode = new TextNode(text);
return textNode;
default:
return jsonNode;
}
}
@JsonIgnore
protected String replaceVariables(String stringToAnalise) {
String s = Utils.replaceVariable("name", softwareConcept.getName(), stringToAnalise);
s = Utils.replaceVariable("version", version, s);
s = Utils.replaceVariable("date", SoftwareVersion.getDateAsString(date), s);
return s;
}
@JsonIgnore
public JsonNode getMetadata() throws Exception {
if(metadata!=null) {
return metadata;
}
JsonNode jsonNode = softwareConcept.getMetadata().deepCopy();
jsonNode = parseJsonNode(jsonNode);
if(getCodeLocation()!=null) {
ObjectNode objectNode = (ObjectNode) jsonNode;
String description = objectNode.get("description").asText();
StringWriter stringWriter = new StringWriter();
stringWriter.append(description);
String codeLocationText = softwareConcept.getCodeLocationAdditionalDescription();
codeLocationText = replaceVariables(codeLocationText);
codeLocationText = Utils.replaceVariable("code_location", getCodeLocation().toString(), codeLocationText);
stringWriter.append(codeLocationText);
TextNode textNode = new TextNode(stringWriter.toString());
objectNode.replace("description", textNode);
}
return jsonNode;
}
@JsonGetter(METADATA_PROPERTY_NAME)
@JsonInclude(Include.NON_NULL)
protected JsonNode getMetadataJsonGetter() {
return metadata;
}
@JsonSetter(METADATA_PROPERTY_NAME)
public void setMetadata(JsonNode metadata) {
this.metadata = metadata;
public void setVersionDOIURL(URL versionDOIURL) {
this.versionDOIURL = versionDOIURL;
}
}

66
src/main/java/org/gcube/common/software/model/Variables.java
View File

@ -24,31 +24,12 @@ public class Variables {
PATTERN = Pattern.compile(REGEX);
}
protected Set<String> keysToBeExcluded;
protected Map<String, Object> properties;
public Variables() {
properties = new LinkedHashMap<>();
}
@JsonIgnore
public void setKeysToBeExcluded(Set<String> keysToBeExcluded) {
if(keysToBeExcluded==null) {
return;
}
if(this.keysToBeExcluded!=null) {
return;
}
this.keysToBeExcluded = keysToBeExcluded;
if(properties!=null) {
for(String key : keysToBeExcluded) {
properties.remove(key);
}
}
}
/**
* Search the variables used in the String provided as argument
* @param string the string to analyze to find variables
@ -101,7 +82,7 @@ public class Variables {
return missingVariables;
}
protected Set<String> parse() throws Exception {
public Set<String> parse() throws Exception {
Set<String> missingVariables = parseAndReplace();
while(missingVariables.size()>0) {
Set<String> newMissingVariables = parseAndReplace();
@ -126,33 +107,26 @@ public class Variables {
@JsonAnySetter
public void addProperty(String key, Object value) {
if(keysToBeExcluded!=null && keysToBeExcluded.contains(key)) {
return;
}
this.properties.put(key, value);
this.properties.put(key, value);
}
/**
* Add to this object the missing properties
* and replace the properties already present
* with the values contained in the provided
* object as argument
* @param variables the properties to merge with this object
* @throws Exception
*/
@JsonIgnore
public void merge(Variables variables) throws Exception {
Map<String, Object> properties = variables.getProperties();
Set<String> keys = properties.keySet();
for(String key : keys) {
if(keysToBeExcluded!=null && keysToBeExcluded.contains(key)) {
return;
}
Object value = properties.get(key);
this.properties.put(key, value);
}
parse();
}
// /**
// * Add to this object the missing properties
// * and replace the properties already present
// * with the values contained in the provided
// * object as argument
// * @param variables the properties to merge with this object
// * @throws Exception
// */
// @JsonIgnore
// public void merge(Variables variables) throws Exception {
// Map<String, Object> properties = variables.getProperties();
// Set<String> keys = properties.keySet();
// for(String key : keys) {
// Object value = properties.get(key);
// this.properties.put(key, value);
// }
// parse();
// }
}

49
src/main/java/org/gcube/common/software/process/export/biblatex/BibLaTeXSoftwareVersionExporter.java
View File

@ -5,12 +5,11 @@ import java.io.File;
import java.io.FileWriter;
import java.nio.charset.StandardCharsets;
import java.nio.file.Files;
import java.util.Set;
import org.gcube.com.fasterxml.jackson.databind.JsonNode;
import org.gcube.com.fasterxml.jackson.databind.node.ArrayNode;
import org.gcube.common.software.model.ElaborationType;
import org.gcube.common.software.model.SoftwareConcept;
import org.gcube.common.software.model.SoftwareVersion;
import org.gcube.common.software.process.export.SoftwareVersionExporter;
import org.gcube.common.software.utils.FileUtils;
import org.gcube.common.software.utils.Utils;
@ -28,14 +27,9 @@ public class BibLaTeXSoftwareVersionExporter extends SoftwareVersionExporter {
public static final String TEMPLATE_FILENAME = "biblatex.template";
public void export() throws Exception {
SoftwareConcept softwareConcept = softwareVersion.getSoftwareConcept();
String name = softwareConcept.getName();
String name = softwareVersion.getName();
ElaborationType export = softwareConcept.getExport();
if(!softwareVersion.getExport()) {
export = ElaborationType.NONE;
}
ElaborationType export = softwareVersion.getExport();
switch (export) {
case ALL:
@ -74,8 +68,7 @@ public class BibLaTeXSoftwareVersionExporter extends SoftwareVersionExporter {
}
private String getCitationID() {
SoftwareConcept softwareConcept = softwareVersion.getSoftwareConcept();
String name = softwareConcept.getName().toLowerCase();
String name = softwareVersion.getName();
StringBuffer stringBuffer = new StringBuffer();
stringBuffer.append(name);
stringBuffer.append("_");
@ -89,8 +82,7 @@ public class BibLaTeXSoftwareVersionExporter extends SoftwareVersionExporter {
return title;
}
private String getAuthors(JsonNode metadata) {
ArrayNode arrayNode = (ArrayNode) metadata.get("creators");
private String getAuthors(ArrayNode arrayNode) {
StringBuffer stringBuffer = new StringBuffer();
int size = arrayNode.size();
for (int i = 0; i < size; i++) {
@ -114,17 +106,12 @@ public class BibLaTeXSoftwareVersionExporter extends SoftwareVersionExporter {
return stringBuffer.toString();
}
// private String getLicense(JsonNode metadata) {
// String license = metadata.get("license").asText();
// return license;
// }
private String getKeywords(JsonNode metadata) {
ArrayNode arrayNode = (ArrayNode) metadata.get("keywords");
private String getKeywords(Set<String> keywords) {
StringBuffer stringBuffer = new StringBuffer();
int size = arrayNode.size();
int size = keywords.size();
String[] array = keywords.toArray(new String[size]);
for (int i = 0; i < size; i++) {
stringBuffer.append(arrayNode.get(i).asText());
stringBuffer.append(array[i]);
if (i < (size - 1)) {
stringBuffer.append(", ");
}
@ -161,24 +148,22 @@ public class BibLaTeXSoftwareVersionExporter extends SoftwareVersionExporter {
// }
protected String parseTemplate(String template) {
SoftwareConcept softwareConcept = softwareVersion.getSoftwareConcept();
JsonNode metadata = softwareConcept.getMetadata();
JsonNode metadata = null; // softwareConcept.getMetadata();
String s = Utils.replaceVariable("citation_id", getCitationID(), template);
s = Utils.replaceVariable("author", getAuthors(metadata), s);
s = Utils.replaceVariable("author", getAuthors(softwareVersion.getAuthors()), s);
s = Utils.replaceVariable("title", getTitle(metadata), s);
s = Utils.replaceVariable("description", softwareConcept.getDescription(), s);
s = Utils.replaceVariable("date", SoftwareVersion.getDateAsString(softwareVersion.getDate()), s);
s = Utils.replaceVariable("description", softwareVersion.getDescription(), s);
s = Utils.replaceVariable("date", Utils.getDateAsString(softwareVersion.getDate()), s);
s = Utils.replaceVariable("version", softwareVersion.getVersion(), s);
s = Utils.replaceVariable("doi", softwareVersion.getDOIURL().toString(), s);
s = Utils.replaceVariable("keywords", getKeywords(metadata), s);
s = Utils.replaceVariable("doi", softwareVersion.getVersionDOIURL().toString(), s);
s = Utils.replaceVariable("keywords", getKeywords(softwareVersion.getKeywords()), s);
// s = Utils.replaceVariable("license", getLicense(metadata), s);
// s = addNotes(s);
return s;
}
protected void generate() throws Exception {
SoftwareConcept softwareConcept = softwareVersion.getSoftwareConcept();
String name = softwareConcept.getName();
String name = softwareVersion.getName();
logger.info("Going to export {} {} in BibLaTex format.", name, softwareVersion.getVersion());
String template = getTemplate();
@ -201,7 +186,7 @@ public class BibLaTeXSoftwareVersionExporter extends SoftwareVersionExporter {
}
protected File getExportFile() {
String name = softwareVersion.getSoftwareConcept().getName();
String name = softwareVersion.getName();
File file = new File(name + EXPORT_FILENAME_EXTENSION);
return file;
}

46
src/main/java/org/gcube/common/software/process/publish/zenodo/ZenodoSoftwareVersionPublisher.java
View File

@ -30,7 +30,6 @@ import org.gcube.com.fasterxml.jackson.databind.node.ObjectNode;
import org.gcube.common.gxhttp.request.GXHTTPStringRequest;
import org.gcube.common.software.config.Config;
import org.gcube.common.software.model.ElaborationType;
import org.gcube.common.software.model.SoftwareConcept;
import org.gcube.common.software.model.SoftwareVersionFile;
import org.gcube.common.software.process.publish.SoftwareVersionPublisher;
import org.glassfish.jersey.client.ClientProperties;
@ -114,7 +113,7 @@ public class ZenodoSoftwareVersionPublisher extends SoftwareVersionPublisher {
}
protected void addFilesToDeposition(List<File> files ) throws Exception {
String depositID = getZenodoIDFromDOIURL(softwareVersion.getDOIURL());
String depositID = getZenodoIDFromDOIURL(softwareVersion.getVersionDOIURL());
String newFilePath = DEPOSTION_FILES_PATH.replace(":id", depositID);
URL url = new URL(zenodoBaseURL, newFilePath);
@ -149,11 +148,13 @@ public class ZenodoSoftwareVersionPublisher extends SoftwareVersionPublisher {
gxHTTPStringRequest.header("Content-Type", "application/json");
gxHTTPStringRequest.header("Accept", "application/json");
String id = getZenodoIDFromDOIURL(softwareVersion.getDOIURL());
String id = getZenodoIDFromDOIURL(softwareVersion.getVersionDOIURL());
gxHTTPStringRequest.path(DEPOSITION_PATH.replace(":id", id));
ObjectNode body = objectMapper.createObjectNode();
body.set(METADATA_FIELD_NAME, softwareVersion.getMetadata());
ObjectNode metadata = generateMetadata();
body.set(METADATA_FIELD_NAME, metadata);
HttpURLConnection httpURLConnection = gxHTTPStringRequest.put(objectMapper.writeValueAsString(body));
getResponse(httpURLConnection);
@ -167,7 +168,7 @@ public class ZenodoSoftwareVersionPublisher extends SoftwareVersionPublisher {
gxHTTPStringRequest.header("Content-Type", "application/json");
gxHTTPStringRequest.header("Accept", "application/json");
String id = getZenodoIDFromDOIURL(softwareVersion.getDOIURL());
String id = getZenodoIDFromDOIURL(softwareVersion.getVersionDOIURL());
gxHTTPStringRequest.path(DEPOSTION_PUBLISH_PATH.replace(":id", id));
HttpURLConnection httpURLConnection = gxHTTPStringRequest.post();
@ -272,19 +273,26 @@ public class ZenodoSoftwareVersionPublisher extends SoftwareVersionPublisher {
gxHTTPStringRequest.path(DEPOSITIONS_COLLECTION_PATH);
ObjectNode body = objectMapper.createObjectNode();
body.set(METADATA_FIELD_NAME, softwareVersion.getMetadata());
ObjectNode metadata = generateMetadata();
body.set(METADATA_FIELD_NAME, metadata);
HttpURLConnection httpURLConnection = gxHTTPStringRequest.post(objectMapper.writeValueAsString(body));
response = getResponse(httpURLConnection);
URL conceptDOIURL = createZenodoDOIURLFromID(response.get("conceptrecid").asText());
softwareVersion.setConceptDOIURL(conceptDOIURL);
softwareVersion.setDOIURL(conceptDOIURL);
URL doiURL = new URL(ZENODO_DOI_URL_BASE_PATH + response.get("id").asText());
softwareVersion.setDOIURL(doiURL);
softwareVersion.setVersionDOIURL(doiURL);
finalize();
}
private ObjectNode generateMetadata() {
// TODO Auto-generated method stub
return null;
}
public void update() throws Exception {
// Enabled softwareConcept edit
GXHTTPStringRequest gxHTTPStringRequest = GXHTTPStringRequest.newRequest(zenodoBaseURL.toString());
@ -292,7 +300,7 @@ public class ZenodoSoftwareVersionPublisher extends SoftwareVersionPublisher {
gxHTTPStringRequest.from(GUCBE_ZENODO_SOFTWARE_DEPOSIT);
gxHTTPStringRequest.queryParams(getAccessTokenQueryParamters());
gxHTTPStringRequest.header("Accept", "application/json");
String id = getZenodoIDFromDOIURL(softwareVersion.getDOIURL());
String id = getZenodoIDFromDOIURL(softwareVersion.getVersionDOIURL());
gxHTTPStringRequest.path(DEPOSTION_EDIT_PATH.replace(":id", id));
HttpURLConnection httpURLConnection = gxHTTPStringRequest.post();
getResponse(httpURLConnection);
@ -331,7 +339,7 @@ public class ZenodoSoftwareVersionPublisher extends SoftwareVersionPublisher {
gxHTTPStringRequest.queryParams(getAccessTokenQueryParamters());
gxHTTPStringRequest.header("Content-Type", "application/json");
gxHTTPStringRequest.header("Accept", "application/json");
String conceptID = getZenodoIDFromDOIURL(softwareVersion.getConceptDOIURL());
String conceptID = getZenodoIDFromDOIURL(softwareVersion.getDOIURL());
gxHTTPStringRequest.path(RECORD_PATH.replace(":id", conceptID));
HttpURLConnection httpURLConnection = gxHTTPStringRequest.get();
JsonNode jsonNode = getResponse(httpURLConnection);
@ -343,7 +351,7 @@ public class ZenodoSoftwareVersionPublisher extends SoftwareVersionPublisher {
* this should avoid errors on softwareConcept.
*/
String latestVersionDOI = jsonNode.get("links").get("doi").asText();
String previousVersionDOI = softwareVersion.getPrevious().getDOIURL().toString();
String previousVersionDOI = softwareVersion.getPrevious().getVersionDOIURL().toString();
if(previousVersionDOI.compareTo(latestVersionDOI)!=0) {
logger.error("Zenodo obtained latest DOI {} != {} DOI from previous version", latestVersionDOI, previousVersionDOI);
throw new RuntimeException("It seems that your json is not up to date with Zenodo.");
@ -385,7 +393,7 @@ public class ZenodoSoftwareVersionPublisher extends SoftwareVersionPublisher {
// The reserved DOI of this created new version will be
URL doiURL = new URL(response.get("doi_url").asText());
softwareVersion.setDOIURL(doiURL);
softwareVersion.setVersionDOIURL(doiURL);
// Remove previous depositionFiles
deletePreviousFiles();
@ -394,14 +402,9 @@ public class ZenodoSoftwareVersionPublisher extends SoftwareVersionPublisher {
}
public void publish() throws Exception {
SoftwareConcept softwareConcept = softwareVersion.getSoftwareConcept();
String name = softwareConcept.getName();
String name = softwareVersion.getName();
ElaborationType publish = softwareConcept.getPublish();
if(!softwareVersion.getPublish()) {
publish = ElaborationType.NONE;
}
ElaborationType publish = softwareVersion.getPublish();
if(publish==ElaborationType.NONE) {
logger.info("Deposit is disabled for {} {}.",
@ -409,7 +412,7 @@ public class ZenodoSoftwareVersionPublisher extends SoftwareVersionPublisher {
return;
}
if(softwareVersion.getDOIURL()!=null) {
if(softwareVersion.getVersionDOIURL()!=null) {
softwareVersion.setNewDeposition(false);
@ -430,7 +433,8 @@ public class ZenodoSoftwareVersionPublisher extends SoftwareVersionPublisher {
name , softwareVersion.getVersion());
softwareVersion.setNewDeposition(true);
if(softwareVersion.getConceptDOIURL()==null) {
if(softwareVersion.getDOIURL()==null) {
create();
}else {
newVersion();

46
src/main/java/org/gcube/common/software/utils/Utils.java
View File

@ -1,11 +1,57 @@
package org.gcube.common.software.utils;
import java.text.SimpleDateFormat;
import java.util.Date;
import java.util.Iterator;
import org.gcube.com.fasterxml.jackson.databind.JsonNode;
import org.gcube.com.fasterxml.jackson.databind.ObjectMapper;
import org.gcube.com.fasterxml.jackson.databind.SerializationFeature;
import org.gcube.com.fasterxml.jackson.databind.node.ObjectNode;
/**
* @author Luca Frosini (ISTI - CNR)
*/
public class Utils {
/**
* DateTime Pattern to be used to serialize Dates
*/
public static final String DATETIME_PATTERN = "yyyy-MM-dd";
public static String getDateAsString(Date date) {
SimpleDateFormat simpleDateFormat = new SimpleDateFormat(DATETIME_PATTERN);
return simpleDateFormat.format(date);
}
protected static ObjectMapper objectMapper;
static {
objectMapper = new ObjectMapper();
SimpleDateFormat sdf = new SimpleDateFormat(Utils.DATETIME_PATTERN);
objectMapper.setDateFormat(sdf);
objectMapper.configure(SerializationFeature.INDENT_OUTPUT, true);
}
public static ObjectMapper getObjectMapper() {
return objectMapper;
}
public static String replaceVariable(String variableName, String replace, String s) {
return s.replaceAll("\\{\\{" + variableName + "\\}\\}", replace);
}
/*
* Merge all the properties contained in version in concept
*/
public static JsonNode merge(JsonNode concept, JsonNode version) {
ObjectNode clonedConcept = concept.deepCopy();
Iterator<String> iterator = version.fieldNames();
while (iterator.hasNext()) {
String fieldName = iterator.next();
JsonNode value = version.get(fieldName);
clonedConcept.replace(fieldName, value.deepCopy());
}
return clonedConcept;
}
}

5
src/test/java/org/gcube/common/software/analyser/SoftwareConceptAnalyserTest.java
View File

@ -15,10 +15,9 @@ public class SoftwareConceptAnalyserTest {
@Test
public void testUsingTestFile() throws Exception {
SoftwareConceptAnalyser softwareConceptAnalyser = new SoftwareConceptAnalyser();
File file = FileUtils.getFileFromFilename(FILENAME);
SoftwareConcept softwareConcept = softwareConceptAnalyser.getSoftwareConcept(file);
softwareConceptAnalyser.analyse(softwareConcept);
SoftwareConceptAnalyser softwareConceptAnalyser = new SoftwareConceptAnalyser(file);
softwareConceptAnalyser.analyse();
}
}

29
src/test/java/org/gcube/common/software/model/VariablesTest.java
View File

@ -1,13 +1,13 @@
package org.gcube.common.software.model;
import java.io.File;
import java.util.HashSet;
import java.util.Set;
import org.gcube.com.fasterxml.jackson.databind.JsonNode;
import org.gcube.com.fasterxml.jackson.databind.ObjectMapper;
import org.gcube.common.software.analyser.SoftwareConceptAnalyser;
import org.gcube.common.software.analyser.SoftwareConceptAnalyserTest;
import org.gcube.common.software.utils.FileUtils;
import org.gcube.common.software.utils.Utils;
import org.junit.Test;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
@ -28,24 +28,25 @@ public class VariablesTest {
@Test
public void test() throws Exception {
SoftwareConceptAnalyser softwareConceptAnalyser = new SoftwareConceptAnalyser();
File file = FileUtils.getFileFromFilename(SoftwareConceptAnalyserTest.FILENAME);
SoftwareConcept softwareConcept = softwareConceptAnalyser.getSoftwareConcept(file);
ObjectMapper objectMapper = Utils.getObjectMapper();
JsonNode jsonNode = objectMapper.readTree(file);
JsonNode concept = jsonNode.get("concept");
ObjectMapper objectMapper = new ObjectMapper();
String serialized = objectMapper.writeValueAsString(softwareConcept);
Variables variables = objectMapper.readValue(serialized, Variables.class);
Set<String> keyToBeExcluded = new HashSet<>();
keyToBeExcluded.add("versions");
variables.setKeysToBeExcluded(keyToBeExcluded);
logger.info("{}", objectMapper.writeValueAsString(concept));
logger.info("Variables are {}\n\n", variables.getProperties());
Variables variables = objectMapper.treeToValue(concept, Variables.class);
// logger.info("Variables are {}\n\n", variables.getProperties());
Set<String> missingVariables = variables.parse();
logger.info("Variables after parsing are {}\\n\\n", variables.getProperties());
logger.info("Missing variables are {}", missingVariables);
// logger.info("Variables after parsing are {}\\n\\n", variables.getProperties());
JsonNode swConcept = objectMapper.convertValue(variables.getProperties(), JsonNode.class);
logger.info("{}", objectMapper.writeValueAsString(swConcept));
}
}

476
src/test/resources/gcat-test-sandbox.json
View File

@ -1,30 +1,141 @@
{
"name": "gcat",
"publish": "ALL",
"export": "ALL",
"description": "gCube Catalogue (gCat) Service allows any client to publish on the gCube Catalogue.",
"files":
[
{
"url": "https://code-repo.d4science.org/gCubeSystem/{{name}}/archive/v{{version}}.zip",
"desired_name": "{{name}}-v{{version}}.zip"
"concept": {
"name": "gcat",
"title": "gCube Catalogue (gCat) Service {{version}}",
"license": {
"id": "EUPL-1.1",
"url": "https://opensource.org/licenses/EUPL-1.1"
},
{
"url": "https://code-repo.d4science.org/gCubeSystem/{{name}}/archive/v{{version}}.tar.gz",
"desired_name": "{{name}}-v{{version}}.tar.gz"
},
{
"url": "https://nexus.d4science.org/nexus/service/local/repo_groups/gcube-releases-all/content/org/gcube/data-catalogue/{{name}}/{{version}}/{{name}}-{{version}}.war",
"desired_name": "{{name}}-v{{version}}.war"
}
],
"code_location": "https://code-repo.d4science.org/gCubeSystem/{{name}}/releases/tag/v{{version}}",
"code_location_text": "\n\n<p>The official source code location of this software version is available at:</p>\n\n<p><a href=\"{{code_location}}\">{{code_location}}</a></p>",
"versions":
[
"keywords": ["gCube", "Catalogue", "D4Science"],
"description": "gCube Catalogue (gCat) Service allows to publish items in the gCube Catalogue.",
"authors": [
{
"affiliation": "Istituto di Scienza e Tecnologie dell'Informazione \"A. Faedo\" - CNR, Italy",
"name": "Frosini, Luca",
"orcid": "0000-0003-3183-2291"
}
],
"files": [
{
"url": "https://code-repo.d4science.org/gCubeSystem/{{name}}/archive/v{{version}}.zip",
"desired_name": "{{name}}-v{{version}}.zip"
},
{
"url": "https://code-repo.d4science.org/gCubeSystem/{{name}}/archive/v{{version}}.tar.gz",
"desired_name": "{{name}}-v{{version}}.tar.gz"
},
{
"url": "https://nexus.d4science.org/nexus/service/local/repo_groups/gcube-releases-all/content/org/gcube/{{group}}/{{name}}/{{version}}/{{name}}-{{version}}.war",
"desired_name": "{{name}}-v{{version}}.war"
}
],
"code_location": "https://code-repo.d4science.org/gCubeSystem/{{name}}",
"doi_url": "https://doi.org/10.5072/zenodo.1139068",
"grants": [
{
"id": "004260",
"name": "DILIGENT",
"url": "https://cordis.europa.eu/project/id/004260"
},
{
"id": "212488",
"name": "D4Science",
"url": "https://cordis.europa.eu/project/id/212488"
},
{
"id": "239019",
"name": "D4Science-II",
"url": "https://cordis.europa.eu/project/id/239019"
},
{
"id": "283465",
"name": "ENVRI",
"url": "https://cordis.europa.eu/project/id/283465"
},
{
"id": "283644",
"name": "iMarine",
"url": "https://cordis.europa.eu/project/id/283644"
},
{
"id": "288754",
"name": "EUBrazilOpenBio",
"url": "https://cordis.europa.eu/project/id/288754"
},
{
"id": "654024",
"name": "SoBigData",
"url": "https://cordis.europa.eu/project/id/654024"
},
{
"id": "654119",
"name": "PARTHENOS",
"url": "https://cordis.europa.eu/project/id/654119"
},
{
"id": "654142",
"name": "EGI-Engage",
"url": "https://cordis.europa.eu/project/id/654142"
},
{
"id": "654182",
"name": "ENVRI PLUS",
"url": "https://cordis.europa.eu/project/id/654182"
},
{
"id": "675680",
"name": "BlueBRIDGE",
"url": "https://cordis.europa.eu/project/id/675680"
},
{
"id": "727610",
"name": "PerformFISH",
"url": "https://cordis.europa.eu/project/id/727610"
},
{
"id": "731001",
"name": "AGINFRA PLUS",
"url": "https://cordis.europa.eu/project/id/731001"
},
{
"id": "818194",
"name": "DESIRA",
"url": "https://cordis.europa.eu/project/id/818194"
},
{
"id": "823914",
"name": "ARIADNEplus",
"url": "https://cordis.europa.eu/project/id/823914"
},
{
"id": "824091",
"name": "RISIS 2",
"url": "https://cordis.europa.eu/project/id/824091"
},
{
"id": "857650",
"name": "EOSC-Pillar",
"url": "https://cordis.europa.eu/project/id/857650"
},
{
"id": "862409",
"name": "Blue Cloud",
"url": "https://cordis.europa.eu/project/id/862409"
},
{
"id": "871042",
"name": "SoBigData-PlusPlus",
"url": "https://cordis.europa.eu/project/id/871042"
}
],
"publish": "ALL",
"export": "ALL"
},
"versions": [
{
"version": "1.0.0",
"date": "2019-01-10",
"group": "data-publishing",
"files": [
{
"url": "https://nexus.d4science.org/nexus/service/local/repositories/gcube-snapshots/content/org/gcube/data-publishing/gcat/1.0.0-SNAPSHOT/gcat-1.0.0-20190109.172827-2.war",
@ -33,15 +144,16 @@
],
"gcube_release_version": null,
"gcube_release_ticket": null,
"code_location": false,
"concept_doi_url": "https://doi.org/10.5072/zenodo.1139445",
"doi_url": "https://doi.org/10.5072/zenodo.1139446",
"doi_url": "https://doi.org/10.5072/zenodo.1139445",
"version_doi_url": "https://doi.org/10.5072/zenodo.1139446",
"code_location": null,
"publish": false,
"export": true
},
{
"version": "1.1.0",
"date": "2019-02-26",
"group": "data-publishing",
"files": [
{
"url": "https://nexus.d4science.org/nexus/service/local/repo_groups/gcube-releases-all/content/org/gcube/data-publishing/gcat/1.1.0-4.13.1-177071/gcat-1.1.0-4.13.1-177071-src.zip",
@ -54,15 +166,16 @@
],
"gcube_release_version": "4.13.1",
"gcube_release_ticket": "https://support.d4science.org/issues/12988",
"code_location": false,
"concept_doi_url": "https://doi.org/10.5072/zenodo.1139445",
"doi_url": "https://doi.org/10.5072/zenodo.1140461",
"doi_url": "https://doi.org/10.5072/zenodo.1139445",
"version_doi_url": "https://doi.org/10.5072/zenodo.1140461",
"code_location": null,
"publish": false,
"export": true
},
{
"version": "1.2.0",
"date": "2019-05-20",
"group": "data-publishing",
"files": [
{
"url": "https://nexus.d4science.org/nexus/service/local/repositories/gcube-snapshots/content/org/gcube/data-publishing/gcat/1.2.0-SNAPSHOT/gcat-1.2.0-20190520.132914-10.war",
@ -71,15 +184,16 @@
],
"gcube_release_version": null,
"gcube_release_ticket": null,
"code_location": false,
"concept_doi_url": "https://doi.org/10.5072/zenodo.1139445",
"doi_url": "https://doi.org/10.5072/zenodo.1140750",
"doi_url": "https://doi.org/10.5072/zenodo.1139445",
"version_doi_url": "https://doi.org/10.5072/zenodo.1140750",
"code_location": null,
"publish": false,
"export": true
},
{
"version": "1.3.0",
"date": "2019-06-27",
"group": "data-publishing",
"files": [
{
"url": "https://nexus.d4science.org/nexus/service/local/repo_groups/gcube-releases-all/content/org/gcube/data-publishing/gcat/1.3.0-4.14.0-179505/gcat-1.3.0-4.14.0-179505-src.zip",
@ -92,352 +206,158 @@
],
"gcube_release_version": "4.14.0",
"gcube_release_ticket": "https://support.d4science.org/issues/16743",
"code_location": false,
"concept_doi_url": "https://doi.org/10.5072/zenodo.1139445",
"doi_url": "https://doi.org/10.5072/zenodo.1143572",
"doi_url": "https://doi.org/10.5072/zenodo.1139445",
"version_doi_url": "https://doi.org/10.5072/zenodo.1143572",
"code_location": null,
"publish": false,
"export": true
},
{
"version": "1.4.0",
"date": "2019-11-20",
"files": [
{
"url": "https://code-repo.d4science.org/gCubeSystem/{{name}}/archive/v{{version}}.zip",
"desired_name": "{{name}}-v{{version}}.zip"
},
{
"url": "https://code-repo.d4science.org/gCubeSystem/{{name}}/archive/v{{version}}.tar.gz",
"desired_name": "{{name}}-v{{version}}.tar.gz"
},
{
"url": "https://nexus.d4science.org/nexus/service/local/repo_groups/gcube-releases-all/content/org/gcube/data-publishing/{{name}}/{{version}}/{{name}}-{{version}}.war",
"desired_name": "{{name}}-v{{version}}.war"
}
],
"group": "data-publishing",
"gcube_release_version": "4.15.0",
"gcube_release_ticket": "https://support.d4science.org/issues/17294",
"concept_doi_url": "https://doi.org/10.5072/zenodo.1139445",
"doi_url": "https://doi.org/10.5072/zenodo.1143583",
"doi_url": "https://doi.org/10.5072/zenodo.1139445",
"version_doi_url": "https://doi.org/10.5072/zenodo.1143583",
"code_location": "https://code-repo.d4science.org/gCubeSystem/{{name}}/releases/tag/v{{version}}",
"publish": false,
"export": true
},
{
"version": "1.4.1",
"date": "2019-12-20",
"files": [
{
"url": "https://code-repo.d4science.org/gCubeSystem/{{name}}/archive/v{{version}}.zip",
"desired_name": "{{name}}-v{{version}}.zip"
},
{
"url": "https://code-repo.d4science.org/gCubeSystem/{{name}}/archive/v{{version}}.tar.gz",
"desired_name": "{{name}}-v{{version}}.tar.gz"
},
{
"url": "https://nexus.d4science.org/nexus/service/local/repo_groups/gcube-releases-all/content/org/gcube/data-publishing/{{name}}/{{version}}/{{name}}-{{version}}.war",
"desired_name": "{{name}}-v{{version}}.war"
}
],
"group": "data-publishing",
"gcube_release_version": "4.18.0",
"gcube_release_ticket": "https://support.d4science.org/issues/18335",
"concept_doi_url": "https://doi.org/10.5072/zenodo.1139445",
"doi_url": "https://doi.org/10.5072/zenodo.1143585",
"doi_url": "https://doi.org/10.5072/zenodo.1139445",
"version_doi_url": "https://doi.org/10.5072/zenodo.1143585",
"code_location": "https://code-repo.d4science.org/gCubeSystem/{{name}}/releases/tag/v{{version}}",
"publish": false,
"export": true
},
{
"version": "1.4.2",
"date": "2020-02-14",
"files": [
{
"url": "https://code-repo.d4science.org/gCubeSystem/{{name}}/archive/v{{version}}.zip",
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443
src/test/resources/gcat-test-sandbox2.json Normal file
View File

@ -0,0 +1,443 @@
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