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Improved docs and aligned code naming

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luca.frosini 2023-08-31 15:26:26 +02:00
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{
"configuration": {
"processors": {
"ZenodoExporter": {
"elaboration": "NONE",
"skip_grants": [
"004260"
],
"additional_html_description": "\n\n<p><a href=\"https://www.gcube-system.org/\">gCube</a> is an open-source software toolkit used for building and operating Hybrid Data Infrastructures enabling the dynamic deployment of Virtual Research Environments, such as the <a href=\"https://www.d4science.org/\">D4Science Infrastructure</a>, by favouring the realisation of reuse-oriented policies.</p>\n\n<p><a href=\"https://www.gcube-system.org/\">gCube</a> has been used to successfully build and operate infrastructures and virtual research environments for application domains ranging from biodiversity to environmental data management and cultural heritage.</p>\n\n<p><a href=\"https://www.gcube-system.org/\">gCube</a> offers components supporting typical data management workflows including data access, curation, processing, and visualisation on a large set of data typologies ranging from primary biodiversity data to geospatial and tabular data.</p>\n\n<p><a href=\"https://www.d4science.org/\">D4Science</a> is a Hybrid Data Infrastructure combining over 500 software components and integrating data from more than 50 different data providers into a coherent and managed system of hardware, software, and data resources. The D4Science infrastructure drastically reduces the cost of ownership, maintenance, and operation thanks to the exploitation of gCube.</p>\n\n<p>&nbsp;</p>\n\n<p>The official source code location of this software version is available at:</p>\n\n<p><a href=\"{{code_location}}\">{{code_location}}</a></p>"
},
"BibLaTeXExporter": {
"elaboration": "ALL"
}
},
"name": "gcat",
"group": "data-catalogue",
"title": "gCube Catalogue (gCat) Service {{version}}",
"license": {
"id": "EUPL-1.1",
"url": "https://opensource.org/licenses/EUPL-1.1"
},
"keywords": [
"gCube",
"Catalogue",
"D4Science"
],
"description": "gCube Catalogue (gCat) Service allows the publication of items in the gCube Catalogue.",
"html_description": "<p>{{description}}</p>",
"authors": [
{
"affiliation": "Istituto di Scienza e Tecnologie dell'Informazione \"A. Faedo\" - CNR, Italy",
"name": "Frosini, Luca",
"orcid": "0000-0003-3183-2291"
}
],
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{
"url": "https://code-repo.d4science.org/gCubeSystem/{{name}}/archive/v{{version}}.zip",
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},
{
"url": "https://code-repo.d4science.org/gCubeSystem/{{name}}/archive/v{{version}}.tar.gz",
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},
{
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},
{
"id": "675680",
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}
],
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{
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"date": "2022-01-27",
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"gcube_release_ticket": "https://support.d4science.org/issues/21685/",
"version_doi_url": "https://doi.org/10.5072/zenodo.1139070"
}
]
}

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@software{gcat_1.0.0,
author = {{Luca Frosini}},
title = {gCube Catalogue (gCat) Service 1.0.0},
abstract = {gCube Catalogue (gCat) Service allows the publication of items in the gCube Catalogue.},
date = {2019-01-10},
version = {1.0.0},
url = {https://doi.org/10.5072/zenodo.1139446},
keywords = {Catalogue, D4Science, gCube}
}
@software{gcat_1.1.0,
author = {{Luca Frosini}},
title = {gCube Catalogue (gCat) Service 1.1.0},
abstract = {gCube Catalogue (gCat) Service allows the publication of items in the gCube Catalogue.},
date = {2019-02-26},
version = {1.1.0},
url = {https://doi.org/10.5072/zenodo.1140461},
keywords = {Catalogue, D4Science, gCube}
}
@software{gcat_1.2.0,
author = {{Luca Frosini}},
title = {gCube Catalogue (gCat) Service 1.2.0},
abstract = {gCube Catalogue (gCat) Service allows the publication of items in the gCube Catalogue.},
date = {2019-05-20},
version = {1.2.0},
url = {https://doi.org/10.5072/zenodo.1140750},
keywords = {Catalogue, D4Science, gCube}
}
@software{gcat_2.0.0,
author = {{Luca Frosini}},
title = {gCube Catalogue (gCat) Service 2.0.0},
abstract = {gCube Catalogue (gCat) Service allows the publication of items in the gCube Catalogue.},
date = {2021-05-04},
version = {2.0.0},
url = {https://doi.org/10.5072/zenodo.1139069},
keywords = {Catalogue, D4Science, gCube}
}
@software{gcat_2.1.0,
author = {{Luca Frosini}},
title = {gCube Catalogue (gCat) Service 2.1.0},
abstract = {gCube Catalogue (gCat) Service allows the publication of items in the gCube Catalogue.},
date = {2022-01-27},
version = {2.1.0},
url = {https://doi.org/10.5072/zenodo.1139070},
keywords = {Catalogue, D4Science, gCube}
}

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{
"configuration": {
"processors": {
"ZenodoExporter": {
"elaboration": "NONE",
"skip_grants": [
"004260"
],
"additional_html_description": "\n\n<p><a href=\"https://www.gcube-system.org/\">gCube</a> is an open-source software toolkit used for building and operating Hybrid Data Infrastructures enabling the dynamic deployment of Virtual Research Environments, such as the <a href=\"https://www.d4science.org/\">D4Science Infrastructure</a>, by favouring the realisation of reuse-oriented policies.</p>\n\n<p><a href=\"https://www.gcube-system.org/\">gCube</a> has been used to successfully build and operate infrastructures and virtual research environments for application domains ranging from biodiversity to environmental data management and cultural heritage.</p>\n\n<p><a href=\"https://www.gcube-system.org/\">gCube</a> offers components supporting typical data management workflows including data access, curation, processing, and visualisation on a large set of data typologies ranging from primary biodiversity data to geospatial and tabular data.</p>\n\n<p><a href=\"https://www.d4science.org/\">D4Science</a> is a Hybrid Data Infrastructure combining over 500 software components and integrating data from more than 50 different data providers into a coherent and managed system of hardware, software, and data resources. The D4Science infrastructure drastically reduces the cost of ownership, maintenance, and operation thanks to the exploitation of gCube.</p>\n\n<p>&nbsp;</p>\n\n<p>The official source code location of this software version is available at:</p>\n\n<p><a href=\"{{code_location}}\">{{code_location}}</a></p>"
},
"BibLaTeXExporter": {
"elaboration": "ALL"
}
},
"name": "gcat",
"group": "data-catalogue",
"title": "gCube Catalogue (gCat) Service {{version}}",
"license": {
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"url": "https://opensource.org/licenses/EUPL-1.1"
},
"keywords": [
"gCube",
"Catalogue",
"D4Science"
],
"description": "gCube Catalogue (gCat) Service allows the publication of items in the gCube Catalogue.",
"html_description": "<p>{{description}}</p>",
"authors": [
{
"affiliation": "Istituto di Scienza e Tecnologie dell'Informazione \"A. Faedo\" - CNR, Italy",
"name": "Frosini, Luca",
"orcid": "0000-0003-3183-2291"
}
],
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{
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160
docs/gcat/gcat.bib
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@ -1,160 +0,0 @@
@software{gcat_1.0.0,
author = {{Luca Frosini}},
title = {gCube Catalogue (gCat) Service 1.0.0},
abstract = {gCube Catalogue (gCat) Service allows the publication of items in the gCube Catalogue.},
date = {2019-01-10},
version = {1.0.0},
url = {https://doi.org/10.5072/zenodo.1139446},
keywords = {Catalogue, D4Science, gCube}
}
@software{gcat_1.1.0,
author = {{Luca Frosini}},
title = {gCube Catalogue (gCat) Service 1.1.0},
abstract = {gCube Catalogue (gCat) Service allows the publication of items in the gCube Catalogue.},
date = {2019-02-26},
version = {1.1.0},
url = {https://doi.org/10.5072/zenodo.1140461},
keywords = {Catalogue, D4Science, gCube}
}
@software{gcat_1.2.0,
author = {{Luca Frosini}},
title = {gCube Catalogue (gCat) Service 1.2.0},
abstract = {gCube Catalogue (gCat) Service allows the publication of items in the gCube Catalogue.},
date = {2019-05-20},
version = {1.2.0},
url = {https://doi.org/10.5072/zenodo.1140750},
keywords = {Catalogue, D4Science, gCube}
}
@software{gcat_1.3.0,
author = {{Luca Frosini}},
title = {gCube Catalogue (gCat) Service 1.3.0},
abstract = {gCube Catalogue (gCat) Service allows the publication of items in the gCube Catalogue.},
date = {2019-06-27},
version = {1.3.0},
url = {https://doi.org/10.5072/zenodo.1143572},
keywords = {Catalogue, D4Science, gCube}
}
@software{gcat_1.4.0,
author = {{Luca Frosini}},
title = {gCube Catalogue (gCat) Service 1.4.0},
abstract = {gCube Catalogue (gCat) Service allows the publication of items in the gCube Catalogue.},
date = {2019-11-20},
version = {1.4.0},
url = {https://doi.org/10.5072/zenodo.1143583},
keywords = {Catalogue, D4Science, gCube}
}
@software{gcat_1.4.1,
author = {{Luca Frosini}},
title = {gCube Catalogue (gCat) Service 1.4.1},
abstract = {gCube Catalogue (gCat) Service allows the publication of items in the gCube Catalogue.},
date = {2019-12-20},
version = {1.4.1},
url = {https://doi.org/10.5072/zenodo.1143585},
keywords = {Catalogue, D4Science, gCube}
}
@software{gcat_1.4.2,
author = {{Luca Frosini}},
title = {gCube Catalogue (gCat) Service 1.4.2},
abstract = {gCube Catalogue (gCat) Service allows the publication of items in the gCube Catalogue.},
date = {2020-02-14},
version = {1.4.2},
url = {https://doi.org/10.5072/zenodo.1143586},
keywords = {Catalogue, D4Science, gCube}
}
@software{gcat_1.4.3,
author = {{Luca Frosini}},
title = {gCube Catalogue (gCat) Service 1.4.3},
abstract = {gCube Catalogue (gCat) Service allows the publication of items in the gCube Catalogue.},
date = {2020-06-16},
version = {1.4.3},
url = {https://doi.org/10.5072/zenodo.1143587},
keywords = {Catalogue, D4Science, gCube}
}
@software{gcat_1.4.4,
author = {{Luca Frosini}},
title = {gCube Catalogue (gCat) Service 1.4.4},
abstract = {gCube Catalogue (gCat) Service allows the publication of items in the gCube Catalogue.},
date = {2021-02-24},
version = {1.4.4},
url = {https://doi.org/10.5072/zenodo.1143589},
keywords = {Catalogue, D4Science, gCube}
}
@software{gcat_1.4.5,
author = {{Luca Frosini}},
title = {gCube Catalogue (gCat) Service 1.4.5},
abstract = {gCube Catalogue (gCat) Service allows the publication of items in the gCube Catalogue.},
date = {2021-03-31},
version = {1.4.5},
url = {https://doi.org/10.5072/zenodo.1143590},
keywords = {Catalogue, D4Science, gCube}
}
@software{gcat_2.0.0,
author = {{Luca Frosini}},
title = {gCube Catalogue (gCat) Service 2.0.0},
abstract = {gCube Catalogue (gCat) Service allows the publication of items in the gCube Catalogue.},
date = {2021-05-04},
version = {2.0.0},
url = {https://doi.org/10.5072/zenodo.1139069},
keywords = {Catalogue, D4Science, gCube}
}
@software{gcat_2.1.0,
author = {{Luca Frosini}},
title = {gCube Catalogue (gCat) Service 2.1.0},
abstract = {gCube Catalogue (gCat) Service allows the publication of items in the gCube Catalogue.},
date = {2022-01-27},
version = {2.1.0},
url = {https://doi.org/10.5072/zenodo.1139070},
keywords = {Catalogue, D4Science, gCube}
}
@software{gcat_2.2.0,
author = {{Luca Frosini}},
title = {gCube Catalogue (gCat) Service 2.2.0},
abstract = {gCube Catalogue (gCat) Service allows the publication of items in the gCube Catalogue.},
date = {2022-05-12},
version = {2.2.0},
url = {https://doi.org/10.5072/zenodo.1139322},
keywords = {Catalogue, D4Science, gCube}
}
@software{gcat_2.3.0,
author = {{Luca Frosini}},
title = {gCube Catalogue (gCat) Service 2.3.0},
abstract = {gCube Catalogue (gCat) Service allows the publication of items in the gCube Catalogue.},
date = {2022-07-22},
version = {2.3.0},
url = {https://doi.org/10.5072/zenodo.1139680},
keywords = {Catalogue, D4Science, gCube}
}
@software{gcat_2.4.0,
author = {{Luca Frosini}},
title = {gCube Catalogue (gCat) Service 2.4.0},
abstract = {gCube Catalogue (gCat) Service allows the publication of items in the gCube Catalogue.},
date = {2022-09-16},
version = {2.4.0},
url = {https://doi.org/10.5072/zenodo.1144798},
keywords = {Catalogue, D4Science, gCube}
}
@software{gcat_2.4.1,
author = {{Luca Frosini}},
title = {gCube Catalogue (gCat) Service 2.4.1},
abstract = {gCube Catalogue (gCat) Service allows the publication of items in the gCube Catalogue.},
date = {2022-12-07},
version = {2.4.1},
url = {https://doi.org/10.5072/zenodo.1144799},
keywords = {Catalogue, D4Science, gCube}
}

272
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@ -1,272 +0,0 @@
{
"configuration" : {
"name" : "gcat",
"group" : "data-catalogue",
"title" : "gCube Catalogue (gCat) Service {{version}}",
"license" : {
"id" : "EUPL-1.1",
"url" : "https://opensource.org/licenses/EUPL-1.1"
},
"keywords" : [ "gCube", "Catalogue", "D4Science" ],
"description" : "gCube Catalogue (gCat) Service allows the publication of items in the gCube Catalogue.",
"html_description" : "<p>{{description}}</p>",
"authors" : [ {
"affiliation" : "Istituto di Scienza e Tecnologie dell'Informazione \"A. Faedo\" - CNR, Italy",
"name" : "Frosini, Luca",
"orcid" : "0000-0003-3183-2291"
} ],
"files" : [ {
"url" : "https://code-repo.d4science.org/gCubeSystem/{{name}}/archive/v{{version}}.zip",
"desired_name" : "{{name}}-v{{version}}.zip"
}, {
"url" : "https://code-repo.d4science.org/gCubeSystem/{{name}}/archive/v{{version}}.tar.gz",
"desired_name" : "{{name}}-v{{version}}.tar.gz"
}, {
"url" : "https://nexus.d4science.org/nexus/service/local/repo_groups/gcube-releases-all/content/org/gcube/{{group}}/{{name}}/{{version}}/{{name}}-{{version}}.war",
"desired_name" : "{{name}}-v{{version}}.war"
} ],
"concept_doi_url" : "https://doi.org/10.5072/zenodo.1139068",
"code_location" : "https://code-repo.d4science.org/gCubeSystem/{{name}}/releases/tag/v{{version}}",
"communities" : [ {
"identifier" : "gcube-system"
} ],
"grants" : [ {
"id" : "004260",
"name" : "DILIGENT",
"url" : "https://cordis.europa.eu/project/id/004260"
}, {
"id" : "212488",
"name" : "D4Science",
"url" : "https://cordis.europa.eu/project/id/212488"
}, {
"id" : "239019",
"name" : "D4Science-II",
"url" : "https://cordis.europa.eu/project/id/239019"
}, {
"id" : "283465",
"name" : "ENVRI",
"url" : "https://cordis.europa.eu/project/id/283465"
}, {
"id" : "283644",
"name" : "iMarine",
"url" : "https://cordis.europa.eu/project/id/283644"
}, {
"id" : "288754",
"name" : "EUBrazilOpenBio",
"url" : "https://cordis.europa.eu/project/id/288754"
}, {
"id" : "654024",
"name" : "SoBigData",
"url" : "https://cordis.europa.eu/project/id/654024"
}, {
"id" : "654119",
"name" : "PARTHENOS",
"url" : "https://cordis.europa.eu/project/id/654119"
}, {
"id" : "654142",
"name" : "EGI-Engage",
"url" : "https://cordis.europa.eu/project/id/654142"
}, {
"id" : "654182",
"name" : "ENVRI PLUS",
"url" : "https://cordis.europa.eu/project/id/654182"
}, {
"id" : "675680",
"name" : "BlueBRIDGE",
"url" : "https://cordis.europa.eu/project/id/675680"
}, {
"id" : "727610",
"name" : "PerformFISH",
"url" : "https://cordis.europa.eu/project/id/727610"
}, {
"id" : "731001",
"name" : "AGINFRA PLUS",
"url" : "https://cordis.europa.eu/project/id/731001"
}, {
"id" : "818194",
"name" : "DESIRA",
"url" : "https://cordis.europa.eu/project/id/818194"
}, {
"id" : "823914",
"name" : "ARIADNEplus",
"url" : "https://cordis.europa.eu/project/id/823914"
}, {
"id" : "824091",
"name" : "RISIS 2",
"url" : "https://cordis.europa.eu/project/id/824091"
}, {
"id" : "857650",
"name" : "EOSC-Pillar",
"url" : "https://cordis.europa.eu/project/id/857650"
}, {
"id" : "862409",
"name" : "Blue Cloud",
"url" : "https://cordis.europa.eu/project/id/862409"
}, {
"id" : "871042",
"name" : "SoBigData-PlusPlus",
"url" : "https://cordis.europa.eu/project/id/871042"
} ],
"export_filename" : "{{name}}",
"exporters" : {
"ZenodoExporter" : {
"elaboration" : "NONE",
"skip_grants" : [ "004260" ],
"additional_html_description" : "\n\n<p><a href=\"https://www.gcube-system.org/\">gCube</a> is an open-source software toolkit used for building and operating Hybrid Data Infrastructures enabling the dynamic deployment of Virtual Research Environments, such as the <a href=\"https://www.d4science.org/\">D4Science Infrastructure</a>, by favouring the realisation of reuse-oriented policies.</p>\n\n<p><a href=\"https://www.gcube-system.org/\">gCube</a> has been used to successfully build and operate infrastructures and virtual research environments for application domains ranging from biodiversity to environmental data management and cultural heritage.</p>\n\n<p><a href=\"https://www.gcube-system.org/\">gCube</a> offers components supporting typical data management workflows including data access, curation, processing, and visualisation on a large set of data typologies ranging from primary biodiversity data to geospatial and tabular data.</p>\n\n<p><a href=\"https://www.d4science.org/\">D4Science</a> is a Hybrid Data Infrastructure combining over 500 software components and integrating data from more than 50 different data providers into a coherent and managed system of hardware, software, and data resources. The D4Science infrastructure drastically reduces the cost of ownership, maintenance, and operation thanks to the exploitation of gCube.</p>\n\n<p>&nbsp;</p>\n\n<p>The official source code location of this software version is available at:</p>\n\n<p><a href=\"{{code_location}}\">{{code_location}}</a></p>"
},
"BibLaTeXExporter" : {
"elaboration" : "ALL"
}
}
},
"concept_doi_url" : "https://doi.org/10.5072/zenodo.1139068",
"artifacts" : [ {
"version" : "1.0.0",
"date" : "2019-01-10",
"group" : "data-publishing",
"files" : [ {
"url" : "https://nexus.d4science.org/nexus/service/local/repositories/gcube-snapshots/content/org/gcube/data-publishing/gcat/1.0.0-SNAPSHOT/gcat-1.0.0-20190109.172827-2.war",
"desired_name" : "{{name}}-v{{version}}.war"
} ],
"gcube_release_version" : null,
"gcube_release_ticket" : null,
"concept_doi_url" : "https://doi.org/10.5072/zenodo.1139445",
"version_doi_url" : "https://doi.org/10.5072/zenodo.1139446",
"code_location" : "https://code-repo.d4science.org/gCubeSystem/{{name}}"
}, {
"version" : "1.1.0",
"date" : "2019-02-26",
"group" : "data-publishing",
"files" : [ {
"url" : "https://nexus.d4science.org/nexus/service/local/repo_groups/gcube-releases-all/content/org/gcube/data-publishing/gcat/1.1.0-4.13.1-177071/gcat-1.1.0-4.13.1-177071-src.zip",
"desired_name" : "{{name}}-v{{version}}.zip"
}, {
"url" : "https://nexus.d4science.org/nexus/service/local/repo_groups/gcube-releases-all/content/org/gcube/data-publishing/gcat/1.1.0-4.13.1-177071/gcat-1.1.0-4.13.1-177071.war",
"desired_name" : "{{name}}-v{{version}}.war"
} ],
"gcube_release_version" : "4.13.1",
"gcube_release_ticket" : "https://support.d4science.org/issues/12988",
"concept_doi_url" : "https://doi.org/10.5072/zenodo.1139445",
"version_doi_url" : "https://doi.org/10.5072/zenodo.1140461",
"code_location" : "https://code-repo.d4science.org/gCubeSystem/{{name}}"
}, {
"version" : "1.2.0",
"date" : "2019-05-20",
"group" : "data-publishing",
"files" : [ {
"url" : "https://nexus.d4science.org/nexus/service/local/repositories/gcube-snapshots/content/org/gcube/data-publishing/gcat/1.2.0-SNAPSHOT/gcat-1.2.0-20190520.132914-10.war",
"desired_name" : "{{name}}-v{{version}}.war"
} ],
"gcube_release_version" : null,
"gcube_release_ticket" : null,
"concept_doi_url" : "https://doi.org/10.5072/zenodo.1139445",
"version_doi_url" : "https://doi.org/10.5072/zenodo.1140750",
"code_location" : "https://code-repo.d4science.org/gCubeSystem/{{name}}"
}, {
"version" : "1.3.0",
"date" : "2019-06-27",
"group" : "data-publishing",
"files" : [ {
"url" : "https://nexus.d4science.org/nexus/service/local/repo_groups/gcube-releases-all/content/org/gcube/data-publishing/gcat/1.3.0-4.14.0-179505/gcat-1.3.0-4.14.0-179505-src.zip",
"desired_name" : "{{name}}-v{{version}}.zip"
}, {
"url" : "https://nexus.d4science.org/nexus/service/local/repo_groups/gcube-releases-all/content/org/gcube/data-publishing/gcat/1.3.0-4.14.0-179505/gcat-1.3.0-4.14.0-179505.war",
"desired_name" : "{{name}}-v{{version}}.war"
} ],
"gcube_release_version" : "4.14.0",
"gcube_release_ticket" : "https://support.d4science.org/issues/16743",
"concept_doi_url" : "https://doi.org/10.5072/zenodo.1139445",
"version_doi_url" : "https://doi.org/10.5072/zenodo.1143572",
"code_location" : "https://code-repo.d4science.org/gCubeSystem/{{name}}"
}, {
"version" : "1.4.0",
"date" : "2019-11-20",
"group" : "data-publishing",
"gcube_release_version" : "4.15.0",
"gcube_release_ticket" : "https://support.d4science.org/issues/17294",
"concept_doi_url" : "https://doi.org/10.5072/zenodo.1139445",
"version_doi_url" : "https://doi.org/10.5072/zenodo.1143583"
}, {
"version" : "1.4.1",
"date" : "2019-12-20",
"group" : "data-publishing",
"gcube_release_version" : "4.18.0",
"gcube_release_ticket" : "https://support.d4science.org/issues/18335",
"concept_doi_url" : "https://doi.org/10.5072/zenodo.1139445",
"version_doi_url" : "https://doi.org/10.5072/zenodo.1143585"
}, {
"version" : "1.4.2",
"date" : "2020-02-14",
"group" : "data-publishing",
"gcube_release_version" : "4.20.0",
"gcube_release_ticket" : "https://support.d4science.org/issues/18507",
"concept_doi_url" : "https://doi.org/10.5072/zenodo.1139445",
"version_doi_url" : "https://doi.org/10.5072/zenodo.1143586"
}, {
"version" : "1.4.3",
"date" : "2020-06-16",
"group" : "data-publishing",
"gcube_release_version" : "4.23.0",
"gcube_release_ticket" : "https://support.d4science.org/issues/19322",
"concept_doi_url" : "https://doi.org/10.5072/zenodo.1139445",
"version_doi_url" : "https://doi.org/10.5072/zenodo.1143587"
}, {
"version" : "1.4.4",
"date" : "2021-02-24",
"group" : "data-publishing",
"gcube_release_version" : "5.0.0",
"gcube_release_ticket" : "https://support.d4science.org/issues/20648",
"concept_doi_url" : "https://doi.org/10.5072/zenodo.1139445",
"version_doi_url" : "https://doi.org/10.5072/zenodo.1143589"
}, {
"version" : "1.4.5",
"date" : "2021-03-31",
"group" : "data-publishing",
"gcube_release_version" : "5.1.0",
"gcube_release_ticket" : "https://support.d4science.org/issues/20920",
"concept_doi_url" : "https://doi.org/10.5072/zenodo.1139445",
"version_doi_url" : "https://doi.org/10.5072/zenodo.1143590"
}, {
"version" : "2.0.0",
"date" : "2021-05-04",
"gcube_release_version" : "5.2.0",
"gcube_release_ticket" : "https://support.d4science.org/issues/19738",
"version_doi_url" : "https://doi.org/10.5072/zenodo.1139069",
"concept_doi_url" : "https://doi.org/10.5072/zenodo.1139068"
}, {
"version" : "2.1.0",
"date" : "2022-01-27",
"gcube_release_version" : "5.7.0",
"gcube_release_ticket" : "https://support.d4science.org/issues/21685/",
"version_doi_url" : "https://doi.org/10.5072/zenodo.1139070",
"concept_doi_url" : "https://doi.org/10.5072/zenodo.1139068"
}, {
"version" : "2.2.0",
"date" : "2022-05-12",
"gcube_release_version" : "5.11.0",
"gcube_release_ticket" : "https://support.d4science.org/issues/22943",
"version_doi_url" : "https://doi.org/10.5072/zenodo.1139322",
"concept_doi_url" : "https://doi.org/10.5072/zenodo.1139068"
}, {
"version" : "2.3.0",
"date" : "2022-07-22",
"gcube_release_version" : "5.13.0",
"gcube_release_ticket" : "https://support.d4science.org/issues/23374",
"version_doi_url" : "https://doi.org/10.5072/zenodo.1139680",
"concept_doi_url" : "https://doi.org/10.5072/zenodo.1139068"
}, {
"version" : "2.4.0",
"date" : "2022-09-16",
"gcube_release_version" : "5.13.1",
"gcube_release_ticket" : "https://support.d4science.org/issues/23650",
"version_doi_url" : "https://doi.org/10.5072/zenodo.1144798",
"concept_doi_url" : "https://doi.org/10.5072/zenodo.1139068"
}, {
"version" : "2.4.1",
"date" : "2022-12-07",
"gcube_release_version" : "5.14.0",
"gcube_release_ticket" : "https://support.d4science.org/issues/23885",
"version_doi_url" : "https://doi.org/10.5072/zenodo.1144799",
"concept_doi_url" : "https://doi.org/10.5072/zenodo.1139068"
} ]
}

98
docs/index.rst
View File

@ -9,8 +9,8 @@ software artifacts (represented by the metadata) and process them.
The library currently offers two processors:
* **ZenodoExporter**: deposit the software artifact in Zenodo obtaining a DOI;
* **BibLaTeXExporter**: export the software artifact in a ``bib`` file using the BibLaTeX format.
* **ZenodoExporter**: It deposits the software artifact in Zenodo, obtaining a DOI;
* **BibLaTeXExporter**: It exports the software artifact in a ``bib`` file using the BibLaTeX format.
Other processors can be easily added in the future by extending the ``SoftwareArtifactProcessor`` class.
@ -26,15 +26,14 @@ The core class of the library is ``Analyser``, which must be initialized with:
The configuration must contain:
* The list of processors to be used and their configuration parameters (required);
* A optional set of metadata which will be used as default metadata for all software artifacts defined in the list.
* An optional set of metadata that will be used as default metadata for all software artifacts defined in the list.
Exporter configuration requires at least the ``elaboration`` property, which can assume the following values
(see ``ElaborationType`` enumerated):
Exporter configuration requires at least the ``elaboration`` property, which can assume the following values (see ``ElaborationType`` enumerated):
* **ALL**: The exporter analyses all the software artifacts;
* **UPDATE_ONLY**: The exporter analyes only the software artifact to be updated in the target;
* **UPDATE_ONLY**: The exporter analyzes only the software artifact to be updated in the target;
* **NEW**: The exporter analyses only the software artifact that does not yet exist in the target;
* **NONE**: Does not export the software artifact in the target, but each software artifact is elaborated without effectively exporting it. It is a dry run.
@ -42,36 +41,95 @@ The processors are executed in the order they are defined.
A processor could produce metadata itself (e.g., the obtained Zenodo DOI).
The input metadata + the metadata generated by a processor are made available to the subsequent processor.
At the end of the processing phase, the library produces the actualized output of all the software artifact metadata.
The list of software artifacts contains an arbitrary set of metadata.
It depends on the processor using certain metadata, among others.
While analyzing each software artifact, the ``Analyser`` link it with the previously elaborated software artifact.
Relating an artifact with the previous one is helpful if a processor needs to link them in some way.
While analyzing each software artifact, the ``Analyser`` links it with the previously elaborated software artifact.
Relating an artifact with the previous one is helpful if a processor needs to link them somehow.
It is in charge of the processor's logic of connecting them using specific metadata values used as conditions.
The library dynamically calculates the value of metadata of a software artifact using the following features:
The library dynamically calculates the value of the metadata of a software artifact using the following features:
* A property can contain the value of another property indicated as a variable using the referred property name;
* The library merges the metadata of the software artifact with the metadata defined in the configuration;
* The library calculates the final metadata values, replacing the variables only after merging the properties.
The following example show an example of configuration
The following example shows an example of configuration.
.. literalinclude:: ../src/test/resources/gcat-test-sandbox.json
.. literalinclude:: ./examples/gcat-doc.json
:language: JSON
..
The output of the elaboration is the following
.. literalinclude:: ./gcat/gcat.json
:language: JSON
This JSON contains two properties at the top level:
* ``configuration`` : a JSON Object that contains the ``processors`` configuration list mentioned above and a set of properties to be used as default for each artifact;
* ``artifacts``: a JSON Array containing the artifact's list to be processed.
In this example, the artifacts property comprises different versions of the same software, but different artifacts can be processed together.
As the reader can notice, a property defined can be used as a variable inside the value of another.
For example
.. code-block:: JSON
{
"title": "gCube Catalogue (gCat) Service {{version}}"
}
The ``title`` value will be evaluated while analyzing the artifact.
Please note that there is no right place to define a property.
Please remember that the metadata contained in the global configuration is merged with the artifact's metadata.
If the same property has been defined, the value of the artifact specification is used (it is more specific).
After the merge, the values containing references to other values are replaced.
For this reason, the title for gcat 1.0.0 will be ``gCube Catalogue (gCat) Service 1.0.0``.
As you can see from the example, the Concept DOI of gcat 1.X.X differs from the concept DOI for gcat 2.X.X
This means that Zenodo will have two different concepts, each with different versions.
Moreover, the group for gcat 1.X.X is ``data-publishing`` which differs from the default value coming from the global configuration, which is ``data-catalogue``.
ZenodoExporter
--------------
At the end of the processing phase, the library produces a file containing:
* the configuration (JSON Object);
* the list of software artifacts described by their metadata (JSON Array) with actualized output.
The output of the elaboration is the following.
.. literalinclude:: ./examples/gcat.json
:language: JSON
The output produced by this processor is quite the same as the input JSON
with the exception of the properties ``concept_doi_url`` and ``version_doi_url``.
When the library deposits a concept on Zenodo, it creates the ``concept_doi_url`` and ``version_doi_url``.
The output file can be used in a future run to update the deposit.
BibLaTeXExporter
----------------
This processor produces an output file using the computed metadata + the metadata obtained from ``ZenodoExporter`` (i.e., ``version_doi_url``).
The format of the output is defined in this template:
.. literalinclude:: ../src/main/resources/biblatex.template
:language: bib
Please note that for each entry there are three braces ``author = {{{author}}}``
The first two are printed as they are because of the bib format, and the third is used as a variable container, as done in values of the JSON properties.
The output generated by ``BibLaTeXExporter`` is
.. literalinclude:: ./gcat/gcat.bib
:language: bib
.. literalinclude:: ./examples/gcat.bib
:language: bib

18
src/main/java/org/gcube/common/software/analyser/Analyser.java
View File

@ -153,19 +153,19 @@ public class Analyser {
ProcessorConfig processorConfig = requestedProcessors.get(className);
processorConfig = actualizeProcessorConfig(processorConfig, softwareArtifactMetadata);
SoftwareArtifactProcessor sve = processorClass.newInstance();
sve.setOutputDirectory(outputDirectory);
sve.setGlobalConfig(globalConfig);
sve.setSoftwareArtifactConfig(softwareArtifactMetadata);
sve.setExporterConfig(processorConfig);
sve.setFirst(i==0);
SoftwareArtifactProcessor sap = processorClass.newInstance();
sap.setOutputDirectory(outputDirectory);
sap.setGlobalConfig(globalConfig);
sap.setSoftwareArtifactConfig(softwareArtifactMetadata);
sap.setProcessorConfig(processorConfig);
sap.setFirst(i==0);
boolean last = i==(artifactMetadataArray.size()-1);
sve.setLast(last);
sve.export();
sap.setLast(last);
sap.export();
if(last) {
outputFiles.add(sve.getOutputFile());
outputFiles.add(sap.getOutputFile());
}
}

6
src/main/java/org/gcube/common/software/processor/SoftwareArtifactProcessor.java
View File

@ -65,11 +65,11 @@ public abstract class SoftwareArtifactProcessor {
this.softwareArtifactMetadata = softwareArtifactMetadata;
}
public ProcessorConfig getExporterConfig() {
public ProcessorConfig getProcessorConfig() {
return processorConfig;
}
public void setExporterConfig(ProcessorConfig processorConfig) {
public void setProcessorConfig(ProcessorConfig processorConfig) {
this.processorConfig = processorConfig;
}
@ -84,7 +84,7 @@ public abstract class SoftwareArtifactProcessor {
public abstract void export() throws Exception;
public File getOutputFile() throws Exception {
String fileName = globalConfig.getFileName()+exportFileNameExtension;
String fileName = globalConfig.getFileName() + exportFileNameExtension;
File file = new File(outputDirectory, fileName);
return file;
}

3
src/test/java/org/gcube/common/software/analyser/AnalyserTest.java
View File

@ -15,8 +15,9 @@ public class AnalyserTest {
private static final Logger logger = LoggerFactory.getLogger(Analyser.class);
public static final String FILENAME = "gcat-test-sandbox.json";
// public static final String FILENAME = "gcat-test-sandbox.json";
// public static final String FILENAME = "gcat-from-scratch.json";
public static final String FILENAME = "gcat-doc.json";
@Test
public void testUsingTestFile() throws Exception {

138
src/test/resources/gcat-doc.json Normal file
View File

@ -0,0 +1,138 @@
{
"configuration": {
"processors": {
"ZenodoExporter": {
"elaboration": "NONE",
"skip_grants": ["004260"],
"additional_html_description": "\n\n<p><a href=\"https://www.gcube-system.org/\">gCube</a> is an open-source software toolkit used for building and operating Hybrid Data Infrastructures enabling the dynamic deployment of Virtual Research Environments, such as the <a href=\"https://www.d4science.org/\">D4Science Infrastructure</a>, by favouring the realisation of reuse-oriented policies.</p>\n\n<p><a href=\"https://www.gcube-system.org/\">gCube</a> has been used to successfully build and operate infrastructures and virtual research environments for application domains ranging from biodiversity to environmental data management and cultural heritage.</p>\n\n<p><a href=\"https://www.gcube-system.org/\">gCube</a> offers components supporting typical data management workflows including data access, curation, processing, and visualisation on a large set of data typologies ranging from primary biodiversity data to geospatial and tabular data.</p>\n\n<p><a href=\"https://www.d4science.org/\">D4Science</a> is a Hybrid Data Infrastructure combining over 500 software components and integrating data from more than 50 different data providers into a coherent and managed system of hardware, software, and data resources. The D4Science infrastructure drastically reduces the cost of ownership, maintenance, and operation thanks to the exploitation of gCube.</p>\n\n<p>&nbsp;</p>\n\n<p>The official source code location of this software version is available at:</p>\n\n<p><a href=\"{{code_location}}\">{{code_location}}</a></p>"
},
"BibLaTeXExporter": {
"elaboration": "ALL"
}
},
"name": "gcat",
"group": "data-catalogue",
"title": "gCube Catalogue (gCat) Service {{version}}",
"license": {
"id": "EUPL-1.1",
"url": "https://opensource.org/licenses/EUPL-1.1"
},
"keywords": ["gCube", "Catalogue", "D4Science"],
"description": "gCube Catalogue (gCat) Service allows the publication of items in the gCube Catalogue.",
"html_description": "<p>{{description}}</p>",
"authors": [
{
"affiliation": "Istituto di Scienza e Tecnologie dell'Informazione \"A. Faedo\" - CNR, Italy",
"name": "Frosini, Luca",
"orcid": "0000-0003-3183-2291"
}
],
"files": [
{
"url": "https://code-repo.d4science.org/gCubeSystem/{{name}}/archive/v{{version}}.zip",
"desired_name": "{{name}}-v{{version}}.zip"
},
{
"url": "https://code-repo.d4science.org/gCubeSystem/{{name}}/archive/v{{version}}.tar.gz",
"desired_name": "{{name}}-v{{version}}.tar.gz"
},
{
"url": "https://nexus.d4science.org/nexus/service/local/repo_groups/gcube-releases-all/content/org/gcube/{{group}}/{{name}}/{{version}}/{{name}}-{{version}}.war",
"desired_name": "{{name}}-v{{version}}.war"
}
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