gCubeSystem
/
rstudio-rprofile
15
0
Fork 0
Code Pull Requests Releases Activity

Rprofile for rstudio over jupyterhub.

This commit is contained in:
Andrea Dell'Amico 2023-03-20 13:16:12 +01:00
parent ba37299b9b
commit 3c90af63de
Signed by: andrea.dellamico
GPG Key ID: 147ABE6CEB9E20FF
1 changed files with 49 additions and 0 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

49
jupyter-Rprofile.site Normal file
View File

@ -0,0 +1,49 @@
print(paste("***************** D4Science supported RStudio-as-a-Service *******************"))
print(paste(""))
print(paste("Welcome to the RStudio service offered by D4Science."))
print(paste(""))
print(paste("Any work produced by making use of assets made available by the D4Science infrastructure should acknowledge the support received and give credits. Please include the following reference:"))
print(paste("M. Assante et al. (2019) Enacting open science by D4Science. Future Gener. Comput. Syst. 101: 555-563 10.1016/j.future.2019.05.063"))
print(paste(""))
print(paste("Please read the following instructions to maximise the exploitation of the RStudio environment."))
print(paste("*****************USAGE NOTES*******************"))
print(paste("*****************D4Science Workspace****************"))
print(paste("You can access your workspace under 'workspace' in hour home directory"))
print(paste(""))
print(paste("You can also access, read and write any folder of your workspace"))
print(paste("by loading - and using - the package 'd4storagehub4R'"))
print(paste("developed by E. Blondel, with source code available at https://github.com/eblondel/d4storagehub4R"))
print(paste("It is recommended to save any worth maintaining file into the workspace to persist it."))
print(paste("The persistence of files stored elsewhere is not guaranteed."))
print(paste("***********************************************"))
print(paste("*****************Software upgrades and cloud facilities*******************"))
print(paste("If you need some packages permanently installed in Rstudio,"))
print(paste("please contact your VRE manager."))
print(paste("R packages may also be installed directly by using the R console."))
print(paste("Those packages can be made permanent installing them into your home directory."))
print(paste("You have to create a directory, eg '~/R-library/4.1'"))
print(paste("and then install the packages in the following way:"))
print(paste("install.packages('pkg_name', lib='~/R-library/4.1')"))
print(paste("Please keep in mind that those packages are only compatible"))
print(paste("with the R version they are build against."))
print(paste("***********************************************"))
########### Default mirror site #############################
local({r <- getOption("repos")
r["CRAN"] <- "https://cran.mirror.garr.it/mirrors/CRAN/"
options(repos=r)
})
Sys.setlocale(category = "LC_ALL", locale = "en_US.UTF-8")
require(d4storagehub4R)
# more information at ?StoragehubManager
.WORKSPACE = d4storagehub4R::StoragehubManager$new(
token_type = "jwt", token = Sys.getenv("D4SCIENCE_TOKEN")
)
print(paste("Using Locale Encoding:",Sys.setlocale("LC_CTYPE","en_US.UTF-8")));