rstudio-d4science/Dockerfile

64 lines
2.0 KiB
Docker

FROM d4science/rstudio-base:2023-03-R4-2
LABEL org.d4science.image.licenses="EUPL-1.2" \
org.d4science.image.source="https://code-repo.d4science.org/gCubeSystem/rstudio-d4science" \
org.d4science.image.vendor="D4Science <https://www.d4science.org>" \
org.d4science.image.authors="Andrea Dell'Amico <andrea.dellamico@isti.cnr.it>"
# R required by vlab5 VRE https://support.d4science.org/issues/23536
ENV DEBIAN_FRONTEND noninteractive
# Upgrade, install some R dependencies and base python3
RUN apt-get update --yes && \
apt-get dist-upgrade --yes && \
apt-get install --yes --no-install-recommends \
libgdal-dev \
pandoc \
pandoc-citeproc \
texlive-xetex \
texlive-latex-base \
texlive-latex-recommended \
texlive-fonts-recommended \
texlive-fonts-extra \
texlive-formats-extra \
libssl-dev \
libxml2-dev \
libv8-dev \
libsecret-1-dev \
librdf0-dev \
libcurl4-openssl-dev \
libgit2-dev \
libxslt-dev \
librdf0 \
redland-utils \
rasqal-utils \
raptor2-utils \
libcairo2-dev \
libpoppler-cpp-dev \
libmagick++-dev \
cmake \
cargo \
libavfilter-dev \
libjq-dev \
libprotobuf-dev \
protobuf-compiler \
libproj-dev
COPY install2r-packages.txt /rocker_scripts
RUN for f in `cat //rocker_scripts/install2r-packages.txt` ; do install2.r --error --skipinstalled --ncpus -1 $f || exit 1 ; done
RUN installGithub.r -d TRUE -u FALSE -r https://packagemanager.rstudio.com/all/__linux__/jammy/latest r-geoflow/geoflow
RUN installGithub.r -d TRUE -u FALSE -r https://packagemanager.rstudio.com/all/__linux__/jammy/latest hrbrmstr/streamgraph
# Rstudio settings
COPY rsession.conf /etc/rstudio/rsession.conf
RUN chmod 0644 /etc/rstudio/rsession.conf
RUN curl -o "${R_HOME}/etc/Rprofile.site" "https://code-repo.d4science.org/gCubeSystem/rstudio-rprofile/raw/branch/master/jupyter-Rprofile.site"
RUN rm -fr /tmp/downloaded_packages/*
RUN rm -fr /tmp/downloaded_packages/* && \
apt-get clean && rm -rf /var/lib/apt/lists/* && \
rm -f /tmp/R*