From 32127f485daba7039ef8fdab9c2301c92a4f4fe6 Mon Sep 17 00:00:00 2001
From: Andrea Dell'Amico <andrea.dellamico@isti.cnr.it>
Date: Sun, 28 Apr 2024 18:00:24 +0200
Subject: [PATCH] See #25460. Google Earth extensions.

---
 Dockerfile                                    | 44 ++-----------------
 ...atlas-vlab5 => Jenkinsfile-itineris-gearth |  4 +-
 install2r-packages.txt                        | 22 ++--------
 3 files changed, 9 insertions(+), 61 deletions(-)
 rename Jenkinsfile-fisheriesatlas-vlab5 => Jenkinsfile-itineris-gearth (91%)

diff --git a/Dockerfile b/Dockerfile
index 05fa027..1c4b443 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -8,46 +8,11 @@ LABEL org.d4science.image.licenses="EUPL-1.2" \
 # R required by vlab5 VRE https://support.d4science.org/issues/23536
 
 ENV DEBIAN_FRONTEND noninteractive
-# Upgrade, install some R dependencies and base python3
-# Add libcurl4-gnutls-dev and remove libcurl4-openssl-dev because
-# 
-# libraptor2-dev : Depends: libcurl4-gnutls-dev but it is not installable
 RUN apt-get update --yes && \
     apt-get install --yes --no-install-recommends \
-    libgdal-dev \
-    pandoc \
-    pandoc-citeproc \
-    texlive-xetex \
-    texlive-latex-base \
-    texlive-latex-recommended \
-    texlive-fonts-recommended \
-    texlive-fonts-extra \
-    texlive-formats-extra \
-    libssl-dev \
-    libxml2-dev \
-    libv8-dev \
-    libsecret-1-dev \
-    librdf0-dev \
-    libgit2-dev \
-    libxslt-dev \
-    librdf0 \
-    redland-utils \
-    rasqal-utils \
-    raptor2-utils \
-    libcairo2-dev \
-    libpoppler-cpp-dev \
-    libmagick++-dev \
-    cmake \
-    cargo \
-    libavfilter-dev \
-    libjq-dev \
-    libprotobuf-dev \
-    protobuf-compiler \
-    libproj-dev \
-    libcurl4-gnutls-dev \
-    libsodium-dev \
-    libudunits2-dev \
-    libglpk40
+    apt-transport-https ca-certificates gnupg curl vim nano
+
+RUN echo "deb [signed-by=/usr/share/keyrings/cloud.google.gpg] https://packages.cloud.google.com/apt cloud-sdk main" | tee -a /etc/apt/sources.list.d/google-cloud-sdk.list && curl https://packages.cloud.google.com/apt/doc/apt-key.gpg | gpg --dearmor -o /usr/share/keyrings/cloud.google.gpg && apt-get update -y && apt-get install google-cloud-sdk google-cloud-cli google-cloud-cli-app-engine-java google-cloud-cli-app-engine-python kubectl -y
 
 RUN mkdir -p /opt/workspace-lib
 RUN mkdir /var/log/workspace-lib
@@ -57,8 +22,7 @@ RUN chmod 0644 /opt/workspace-lib/fuse-workspace.jar
 COPY install2r-packages.txt /rocker_scripts
 RUN for f in `cat /rocker_scripts/install2r-packages.txt` ; do install2.r --error --skipinstalled --ncpus -1 $f || exit 1 ; done
 
-RUN installGithub.r -d TRUE -u FALSE -r https://packagemanager.rstudio.com/all/__linux__/jammy/latest r-geoflow/geoflow
-RUN installGithub.r -d TRUE -u FALSE -r https://packagemanager.rstudio.com/all/__linux__/jammy/latest hrbrmstr/streamgraph
+RUN installGithub.r -d TRUE -u FALSE -r https://packagemanager.rstudio.com/all/__linux__/jammy/latest r-earthengine/rgeeExtra
 
 # Rstudio settings
 COPY rsession.conf /etc/rstudio/rsession.conf
diff --git a/Jenkinsfile-fisheriesatlas-vlab5 b/Jenkinsfile-itineris-gearth
similarity index 91%
rename from Jenkinsfile-fisheriesatlas-vlab5
rename to Jenkinsfile-itineris-gearth
index 16f58c2..71bcbb2 100644
--- a/Jenkinsfile-fisheriesatlas-vlab5
+++ b/Jenkinsfile-itineris-gearth
@@ -9,7 +9,7 @@ pipeline {
       label 'docker'
   }
   environment {
-    imagename = "rstudio/rstudio-fisheriesatlas-vlab5"
+    imagename = "rstudio/rstudio-itineris-gearth"
     hubname = "hub.dev.d4science.org"
     registryUrl = "https://hub.dev.d4science.org"
     registryCredential = 'cccd3cf5-9d6c-4044-85d6-59bede0c43f4'
@@ -19,7 +19,7 @@ pipeline {
   stages {
     // stage('Cloning Git') {
     //   steps {
-    //     git([url: git_url, branch: 'fisheriesatlas-vlab5', credentialsId: '88b54962-1c0e-49cb-8155-22276860f346'])
+    //     git([url: git_url, branch: 'itineris_gearth', credentialsId: '88b54962-1c0e-49cb-8155-22276860f346'])
     //   }
     // }
     stage('Building image') {
diff --git a/install2r-packages.txt b/install2r-packages.txt
index 7bf14f2..9f008f5 100644
--- a/install2r-packages.txt
+++ b/install2r-packages.txt
@@ -1,20 +1,4 @@
-remotes
-dotenv
-here
-magick
-pbdZMQ
-nloptr
-tinytex
-rpostgis
-gargle
+reticulate
+rgee
 googledrive
-gsheet
-renv
-shinyWidgets
-leaflet
-leaflet.extras
-leaflet.minicharts
-leafpm
-mapedit
-xml2
-pals
+googleCloudStorageR