generated from gCubeCI/Pipeline-Docker-Template
18 lines
775 B
Bash
18 lines
775 B
Bash
#!/usr/bin/with-contenv bash
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# shellcheck shell=bash
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## Set our dynamic variables in Renviron.site to be reflected by RStudio Server or Shiny Server
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exclude_vars="HOME PASSWORD RSTUDIO_VERSION BATCH_USER_CREATION"
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for file in /var/run/s6/container_environment/*
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do
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sed -i "/^${file##*/}=/d" ${R_HOME}/etc/Renviron.site
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regex="(^| )${file##*/}($| )"
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[[ ! $exclude_vars =~ $regex ]] && echo "${file##*/}=$(cat $file)" >> ${R_HOME}/etc/Renviron.site || echo "skipping $file"
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done
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# Download a custom Rprofile.site
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wget -q https://code-repo.d4science.org/gCubeSystem/rstudio-rprofile/raw/branch/master/container-Rprofile.site -O ${R_HOME}/etc/Rprofile.site
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## only file-owner (root) should read container_environment files:
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chmod 600 /var/run/s6/container_environment/*
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