From d53ed7b61b5679e9de4689af61866803ca7cd434 Mon Sep 17 00:00:00 2001 From: Andrea Dell'Amico Date: Tue, 29 Jun 2021 18:29:00 +0200 Subject: [PATCH] Revisioned lists of R packages. --- README.md | 4 +- r_cran_pkgs.txt | 18 +++ r_cran_versioned_pkgs.txt | 0 r_deb_pkgs.txt | 219 +++++++++++++++++++++++++++++++++ r_github_pkgs.txt | 17 +++ test_r_cran_pkgs.txt | 18 +++ test_r_cran_versioned_pkgs.txt | 0 test_r_deb_pkgs.txt | 219 +++++++++++++++++++++++++++++++++ test_r_github_pkgs.txt | 17 +++ 9 files changed, 510 insertions(+), 2 deletions(-) create mode 100644 r_cran_pkgs.txt create mode 100644 r_cran_versioned_pkgs.txt create mode 100644 r_deb_pkgs.txt create mode 100644 r_github_pkgs.txt create mode 100644 test_r_cran_pkgs.txt create mode 100644 test_r_cran_versioned_pkgs.txt create mode 100644 test_r_deb_pkgs.txt create mode 100644 test_r_github_pkgs.txt diff --git a/README.md b/README.md index 602e936..8a4b572 100644 --- a/README.md +++ b/README.md @@ -1,4 +1,4 @@ # r-packages-list -List of R packages, required by some services. -The packages can be sources from CRAN-like repositories, sources from github, or - preferred - packages in deb format \ No newline at end of file +List of R packages, required by some services. +The packages can be sources from CRAN-like repositories, sources from github, or - preferred - packages in deb format. diff --git a/r_cran_pkgs.txt b/r_cran_pkgs.txt new file mode 100644 index 0000000..d2ec94f --- /dev/null +++ b/r_cran_pkgs.txt @@ -0,0 +1,18 @@ +FLAssess:http://flr-project.org/R +FLBRP:http://flr-project.org/R +FLCore:http://flr-project.org/R +FLEDA:http://flr-project.org/R +FLFishery:http://flr-project.org/R +FLFleet:http://flr-project.org/R +FLSAM:http://flr-project.org/R +FLXSA:http://flr-project.org/R +FLa4a:http://flr-project.org/R +FLash:http://flr-project.org/R +FLife:http://flr-project.org/R +SQLiteFL:http://flr-project.org/R +aspic:http://flr-project.org/R +biodyn:http://flr-project.org/R +diags:http://flr-project.org/R +ggplotFL:http://flr-project.org/R +lh:http://flr-project.org/R +robis diff --git a/r_cran_versioned_pkgs.txt b/r_cran_versioned_pkgs.txt new file mode 100644 index 0000000..e69de29 diff --git a/r_deb_pkgs.txt b/r_deb_pkgs.txt new file mode 100644 index 0000000..f9941f2 --- /dev/null +++ b/r_deb_pkgs.txt @@ -0,0 +1,219 @@ +graphicsmagick +gsl-bin +imagemagick +libcurl4-openssl-dev +libgeos-dev +libgfortran5 +libglu1-mesa-dev +libgs-dev +libgsl0-dev +libjq-dev +libmagick++-dev +libmono-2.0-1 +libmono-corlib2.0-cil +libmono-http4.0-cil +libmono-microsoft-visualbasic10.0-cil +libmono-system-core4.0-cil +libnetcdf-dev +libnlopt-dev +libproj-dev +libprotobuf-dev +librdf0-dev +libsodium-dev +libspatialite-dev +libudunits2-dev +libv8-3.14-dev +mdbtools +mencoder +mesa-common-dev +mono-runtime +netcat +netcdf-bin +odbc-mdbtools +p7zip-full +postgresql-client +proj-bin +proj-data +protobuf-compiler +python-h5py +r-cran-animation +r-cran-bayesmix +r-cran-bitops +r-cran-calibrate +r-cran-caret +r-cran-chron +r-cran-cleangeo +r-cran-coda +r-cran-colorspace +r-cran-copula +r-cran-corrplot +r-cran-cowplot +r-cran-curl +r-cran-data.table +r-cran-dbi +r-cran-deoptimr +r-cran-desctools +r-cran-dichromat +r-cran-digest +r-cran-diptest +r-cran-dismo +r-cran-distr +r-cran-doby +r-cran-domc +r-cran-doparallel +r-cran-dplyr +r-cran-dt +r-cran-earth +r-cran-ellipse +r-cran-epir +r-cran-evaluate +r-cran-fields +r-cran-fishmethods +r-cran-flexmix +r-cran-foreach +r-cran-fpc +r-cran-ga +r-cran-gam +r-cran-gdata +r-cran-geojsonio +r-cran-geometa +r-cran-geonapi +r-cran-geosapi +r-cran-geosphere +r-cran-ggplot2 +r-cran-googlevis +r-cran-gplots +r-cran-gridextra +r-cran-gridgraphics +r-cran-gsl +r-cran-gtable +r-cran-highlight +r-cran-hmisc +r-cran-htmltools +r-cran-htmlwidgets +r-cran-httr +r-cran-igraph +r-cran-jsonlite +r-cran-kernlab +r-cran-knitr +r-cran-labeling +r-cran-laf +r-cran-lattice +r-cran-lme4 +r-cran-locfit +r-cran-lubridate +r-cran-lwgeom +r-cran-magick +r-cran-magrittr +r-cran-mapdata +r-cran-maps +r-cran-maptools +r-cran-mapview +r-cran-mass +r-cran-matrix +r-cran-mc2d +r-cran-mclust +r-cran-mcmcpack +r-cran-memoise +r-cran-mgcv +r-cran-minicran +r-cran-minqa +r-cran-mnormt +r-cran-modeltools +r-cran-msm +r-cran-multcomp +r-cran-munsell +r-cran-mvtnorm +r-cran-ncdf4 +r-cran-nloptr +r-cran-nnet +r-cran-numderiv +r-cran-openxlsx +r-cran-ows4r +r-cran-plotly +r-cran-plotrix +r-cran-plyr +r-cran-prabclus +r-cran-pryr +r-cran-r.cache +r-cran-r.matlab +r-cran-r.methodss3 +r-cran-r.oo +r-cran-r.utils +r-cran-r2html +r-cran-r2jags +r-cran-r2winbugs +r-cran-random +r-cran-raster +r-cran-rastervis +r-cran-rcolorbrewer +r-cran-rcpp +r-cran-rcppeigen +r-cran-rcurl +r-cran-rdflib +r-cran-readr +r-cran-readxl +r-cran-redland +r-cran-repmis +r-cran-reshape +r-cran-reshape2 +r-cran-rgdal +r-cran-rgeos +r-cran-rgl +r-cran-rgraphics +r-cran-rjags +r-cran-rjava +r-cran-rjsonio +r-cran-rlang +r-cran-rmarkdown +r-cran-robustbase +r-cran-rpart +r-cran-rpostgres +r-cran-rpostgresql +r-cran-rsdmx +r-cran-rserve +r-cran-rstan +r-cran-runjags +r-cran-rworldmap +r-cran-sandwich +r-cran-scales +r-cran-sf +r-cran-shapefiles +r-cran-shiny +r-cran-smatr +r-cran-sn +r-cran-snow +r-cran-sodium +r-cran-sp +r-cran-spam +r-cran-splines2 +r-cran-sqldf +r-cran-stringr +r-cran-survival +r-cran-svglite +r-cran-tclust +r-cran-th.data +r-cran-tidyr +r-cran-tidyverse +r-cran-tmb +r-cran-trimcluster +r-cran-urltools +r-cran-viridis +r-cran-whisker +r-cran-wicket +r-cran-withr +r-cran-writexl +r-cran-xml +r-cran-xtable +r-cran-xts +r-cran-zen4r +sox +sshpass +texlive +texlive-base +texlive-binaries +texlive-formats-extra +texlive-humanities +texlive-latex-base +texlive-latex-extra +texlive-xetex diff --git a/r_github_pkgs.txt b/r_github_pkgs.txt new file mode 100644 index 0000000..90b677d --- /dev/null +++ b/r_github_pkgs.txt @@ -0,0 +1,17 @@ +flr/FLAssess +flr/FLBEIA +flr/FLCore +flr/FLRDynState +flr/FLash +flr/FLash2 +flr/ggplotFL +mawp/spict +openfigis/RFigisGeo +openfigis/RFirmsGeo +ramnathv/rCharts +fishfollower/SAM/stockassessment +taiyun/corrplot +statnmap/SDMSelect +ptaconet/rtunaatlas +OpenSILEX/phisWSClientR +eblondel/geoflow diff --git a/test_r_cran_pkgs.txt b/test_r_cran_pkgs.txt new file mode 100644 index 0000000..d2ec94f --- /dev/null +++ b/test_r_cran_pkgs.txt @@ -0,0 +1,18 @@ +FLAssess:http://flr-project.org/R +FLBRP:http://flr-project.org/R +FLCore:http://flr-project.org/R +FLEDA:http://flr-project.org/R +FLFishery:http://flr-project.org/R +FLFleet:http://flr-project.org/R +FLSAM:http://flr-project.org/R +FLXSA:http://flr-project.org/R +FLa4a:http://flr-project.org/R +FLash:http://flr-project.org/R +FLife:http://flr-project.org/R +SQLiteFL:http://flr-project.org/R +aspic:http://flr-project.org/R +biodyn:http://flr-project.org/R +diags:http://flr-project.org/R +ggplotFL:http://flr-project.org/R +lh:http://flr-project.org/R +robis diff --git a/test_r_cran_versioned_pkgs.txt b/test_r_cran_versioned_pkgs.txt new file mode 100644 index 0000000..e69de29 diff --git a/test_r_deb_pkgs.txt b/test_r_deb_pkgs.txt new file mode 100644 index 0000000..f9941f2 --- /dev/null +++ b/test_r_deb_pkgs.txt @@ -0,0 +1,219 @@ +graphicsmagick +gsl-bin +imagemagick +libcurl4-openssl-dev +libgeos-dev +libgfortran5 +libglu1-mesa-dev +libgs-dev +libgsl0-dev +libjq-dev +libmagick++-dev +libmono-2.0-1 +libmono-corlib2.0-cil +libmono-http4.0-cil +libmono-microsoft-visualbasic10.0-cil +libmono-system-core4.0-cil +libnetcdf-dev +libnlopt-dev +libproj-dev +libprotobuf-dev +librdf0-dev +libsodium-dev +libspatialite-dev +libudunits2-dev +libv8-3.14-dev +mdbtools +mencoder +mesa-common-dev +mono-runtime +netcat +netcdf-bin +odbc-mdbtools +p7zip-full +postgresql-client +proj-bin +proj-data +protobuf-compiler +python-h5py +r-cran-animation +r-cran-bayesmix +r-cran-bitops +r-cran-calibrate +r-cran-caret +r-cran-chron +r-cran-cleangeo +r-cran-coda +r-cran-colorspace +r-cran-copula +r-cran-corrplot +r-cran-cowplot +r-cran-curl +r-cran-data.table +r-cran-dbi +r-cran-deoptimr +r-cran-desctools +r-cran-dichromat +r-cran-digest +r-cran-diptest +r-cran-dismo +r-cran-distr +r-cran-doby +r-cran-domc +r-cran-doparallel +r-cran-dplyr +r-cran-dt +r-cran-earth +r-cran-ellipse +r-cran-epir +r-cran-evaluate +r-cran-fields +r-cran-fishmethods +r-cran-flexmix +r-cran-foreach +r-cran-fpc +r-cran-ga +r-cran-gam +r-cran-gdata +r-cran-geojsonio +r-cran-geometa +r-cran-geonapi +r-cran-geosapi +r-cran-geosphere +r-cran-ggplot2 +r-cran-googlevis +r-cran-gplots +r-cran-gridextra +r-cran-gridgraphics +r-cran-gsl +r-cran-gtable +r-cran-highlight +r-cran-hmisc +r-cran-htmltools +r-cran-htmlwidgets +r-cran-httr +r-cran-igraph +r-cran-jsonlite +r-cran-kernlab +r-cran-knitr +r-cran-labeling +r-cran-laf +r-cran-lattice +r-cran-lme4 +r-cran-locfit +r-cran-lubridate +r-cran-lwgeom +r-cran-magick +r-cran-magrittr +r-cran-mapdata +r-cran-maps +r-cran-maptools +r-cran-mapview +r-cran-mass +r-cran-matrix +r-cran-mc2d +r-cran-mclust +r-cran-mcmcpack +r-cran-memoise +r-cran-mgcv +r-cran-minicran +r-cran-minqa +r-cran-mnormt +r-cran-modeltools +r-cran-msm +r-cran-multcomp +r-cran-munsell +r-cran-mvtnorm +r-cran-ncdf4 +r-cran-nloptr +r-cran-nnet +r-cran-numderiv +r-cran-openxlsx +r-cran-ows4r +r-cran-plotly +r-cran-plotrix +r-cran-plyr +r-cran-prabclus +r-cran-pryr +r-cran-r.cache +r-cran-r.matlab +r-cran-r.methodss3 +r-cran-r.oo +r-cran-r.utils +r-cran-r2html +r-cran-r2jags +r-cran-r2winbugs +r-cran-random +r-cran-raster +r-cran-rastervis +r-cran-rcolorbrewer +r-cran-rcpp +r-cran-rcppeigen +r-cran-rcurl +r-cran-rdflib +r-cran-readr +r-cran-readxl +r-cran-redland +r-cran-repmis +r-cran-reshape +r-cran-reshape2 +r-cran-rgdal +r-cran-rgeos +r-cran-rgl +r-cran-rgraphics +r-cran-rjags +r-cran-rjava +r-cran-rjsonio +r-cran-rlang +r-cran-rmarkdown +r-cran-robustbase +r-cran-rpart +r-cran-rpostgres +r-cran-rpostgresql +r-cran-rsdmx +r-cran-rserve +r-cran-rstan +r-cran-runjags +r-cran-rworldmap +r-cran-sandwich +r-cran-scales +r-cran-sf +r-cran-shapefiles +r-cran-shiny +r-cran-smatr +r-cran-sn +r-cran-snow +r-cran-sodium +r-cran-sp +r-cran-spam +r-cran-splines2 +r-cran-sqldf +r-cran-stringr +r-cran-survival +r-cran-svglite +r-cran-tclust +r-cran-th.data +r-cran-tidyr +r-cran-tidyverse +r-cran-tmb +r-cran-trimcluster +r-cran-urltools +r-cran-viridis +r-cran-whisker +r-cran-wicket +r-cran-withr +r-cran-writexl +r-cran-xml +r-cran-xtable +r-cran-xts +r-cran-zen4r +sox +sshpass +texlive +texlive-base +texlive-binaries +texlive-formats-extra +texlive-humanities +texlive-latex-base +texlive-latex-extra +texlive-xetex diff --git a/test_r_github_pkgs.txt b/test_r_github_pkgs.txt new file mode 100644 index 0000000..90b677d --- /dev/null +++ b/test_r_github_pkgs.txt @@ -0,0 +1,17 @@ +flr/FLAssess +flr/FLBEIA +flr/FLCore +flr/FLRDynState +flr/FLash +flr/FLash2 +flr/ggplotFL +mawp/spict +openfigis/RFigisGeo +openfigis/RFirmsGeo +ramnathv/rCharts +fishfollower/SAM/stockassessment +taiyun/corrplot +statnmap/SDMSelect +ptaconet/rtunaatlas +OpenSILEX/phisWSClientR +eblondel/geoflow