Revisioned lists of R packages.

3 years ago · d53ed7b61b
parent 5bfdaf7d89
commit d53ed7b61b
9 changed files with 510 additions and 2 deletions
--- a/README.md
+++ b/README.md
@ -1,4 +1,4 @@
 # r-packages-list

-List of R packages, required by some services.
-The packages can be sources from  CRAN-like repositories, sources from github, or - preferred - packages in deb format
+List of R packages, required by some services.
+The packages can be sources from  CRAN-like repositories, sources from github, or - preferred - packages in deb format.
--- a/r_cran_pkgs.txt
+++ b/r_cran_pkgs.txt
@ -0,0 +1,18 @@
+FLAssess:http://flr-project.org/R
+FLBRP:http://flr-project.org/R
+FLCore:http://flr-project.org/R
+FLEDA:http://flr-project.org/R
+FLFishery:http://flr-project.org/R
+FLFleet:http://flr-project.org/R
+FLSAM:http://flr-project.org/R
+FLXSA:http://flr-project.org/R
+FLa4a:http://flr-project.org/R
+FLash:http://flr-project.org/R
+FLife:http://flr-project.org/R
+SQLiteFL:http://flr-project.org/R
+aspic:http://flr-project.org/R
+biodyn:http://flr-project.org/R
+diags:http://flr-project.org/R  
+ggplotFL:http://flr-project.org/R
+lh:http://flr-project.org/R
+robis
--- a/r_cran_versioned_pkgs.txt
+++ b/r_cran_versioned_pkgs.txt
--- a/r_deb_pkgs.txt
+++ b/r_deb_pkgs.txt
@ -0,0 +1,219 @@
+graphicsmagick
+gsl-bin
+imagemagick
+libcurl4-openssl-dev
+libgeos-dev
+libgfortran5
+libglu1-mesa-dev
+libgs-dev
+libgsl0-dev
+libjq-dev
+libmagick++-dev
+libmono-2.0-1
+libmono-corlib2.0-cil
+libmono-http4.0-cil
+libmono-microsoft-visualbasic10.0-cil
+libmono-system-core4.0-cil
+libnetcdf-dev
+libnlopt-dev
+libproj-dev
+libprotobuf-dev
+librdf0-dev
+libsodium-dev
+libspatialite-dev
+libudunits2-dev
+libv8-3.14-dev
+mdbtools
+mencoder
+mesa-common-dev
+mono-runtime
+netcat
+netcdf-bin
+odbc-mdbtools
+p7zip-full
+postgresql-client
+proj-bin
+proj-data
+protobuf-compiler
+python-h5py
+r-cran-animation
+r-cran-bayesmix
+r-cran-bitops
+r-cran-calibrate
+r-cran-caret
+r-cran-chron
+r-cran-cleangeo
+r-cran-coda
+r-cran-colorspace
+r-cran-copula
+r-cran-corrplot
+r-cran-cowplot
+r-cran-curl
+r-cran-data.table
+r-cran-dbi
+r-cran-deoptimr
+r-cran-desctools
+r-cran-dichromat
+r-cran-digest
+r-cran-diptest
+r-cran-dismo
+r-cran-distr
+r-cran-doby
+r-cran-domc
+r-cran-doparallel
+r-cran-dplyr
+r-cran-dt
+r-cran-earth
+r-cran-ellipse
+r-cran-epir
+r-cran-evaluate
+r-cran-fields
+r-cran-fishmethods
+r-cran-flexmix
+r-cran-foreach
+r-cran-fpc
+r-cran-ga
+r-cran-gam
+r-cran-gdata
+r-cran-geojsonio
+r-cran-geometa
+r-cran-geonapi
+r-cran-geosapi
+r-cran-geosphere
+r-cran-ggplot2
+r-cran-googlevis
+r-cran-gplots
+r-cran-gridextra
+r-cran-gridgraphics
+r-cran-gsl
+r-cran-gtable
+r-cran-highlight
+r-cran-hmisc
+r-cran-htmltools
+r-cran-htmlwidgets
+r-cran-httr
+r-cran-igraph
+r-cran-jsonlite
+r-cran-kernlab
+r-cran-knitr
+r-cran-labeling
+r-cran-laf
+r-cran-lattice
+r-cran-lme4
+r-cran-locfit
+r-cran-lubridate
+r-cran-lwgeom
+r-cran-magick
+r-cran-magrittr
+r-cran-mapdata
+r-cran-maps
+r-cran-maptools
+r-cran-mapview
+r-cran-mass
+r-cran-matrix
+r-cran-mc2d
+r-cran-mclust
+r-cran-mcmcpack
+r-cran-memoise
+r-cran-mgcv
+r-cran-minicran
+r-cran-minqa
+r-cran-mnormt
+r-cran-modeltools
+r-cran-msm
+r-cran-multcomp
+r-cran-munsell
+r-cran-mvtnorm
+r-cran-ncdf4
+r-cran-nloptr
+r-cran-nnet
+r-cran-numderiv
+r-cran-openxlsx
+r-cran-ows4r
+r-cran-plotly
+r-cran-plotrix
+r-cran-plyr
+r-cran-prabclus
+r-cran-pryr
+r-cran-r.cache
+r-cran-r.matlab
+r-cran-r.methodss3
+r-cran-r.oo
+r-cran-r.utils
+r-cran-r2html
+r-cran-r2jags
+r-cran-r2winbugs
+r-cran-random
+r-cran-raster
+r-cran-rastervis
+r-cran-rcolorbrewer
+r-cran-rcpp
+r-cran-rcppeigen
+r-cran-rcurl
+r-cran-rdflib
+r-cran-readr
+r-cran-readxl
+r-cran-redland
+r-cran-repmis
+r-cran-reshape
+r-cran-reshape2
+r-cran-rgdal
+r-cran-rgeos
+r-cran-rgl
+r-cran-rgraphics
+r-cran-rjags
+r-cran-rjava
+r-cran-rjsonio
+r-cran-rlang
+r-cran-rmarkdown
+r-cran-robustbase
+r-cran-rpart
+r-cran-rpostgres
+r-cran-rpostgresql
+r-cran-rsdmx
+r-cran-rserve
+r-cran-rstan
+r-cran-runjags
+r-cran-rworldmap
+r-cran-sandwich
+r-cran-scales
+r-cran-sf
+r-cran-shapefiles
+r-cran-shiny
+r-cran-smatr
+r-cran-sn
+r-cran-snow
+r-cran-sodium
+r-cran-sp
+r-cran-spam
+r-cran-splines2
+r-cran-sqldf
+r-cran-stringr
+r-cran-survival
+r-cran-svglite
+r-cran-tclust
+r-cran-th.data
+r-cran-tidyr
+r-cran-tidyverse
+r-cran-tmb
+r-cran-trimcluster
+r-cran-urltools
+r-cran-viridis
+r-cran-whisker
+r-cran-wicket
+r-cran-withr
+r-cran-writexl
+r-cran-xml
+r-cran-xtable
+r-cran-xts
+r-cran-zen4r
+sox
+sshpass
+texlive
+texlive-base
+texlive-binaries
+texlive-formats-extra
+texlive-humanities
+texlive-latex-base
+texlive-latex-extra
+texlive-xetex
--- a/r_github_pkgs.txt
+++ b/r_github_pkgs.txt
@ -0,0 +1,17 @@
+flr/FLAssess
+flr/FLBEIA
+flr/FLCore
+flr/FLRDynState
+flr/FLash
+flr/FLash2
+flr/ggplotFL
+mawp/spict
+openfigis/RFigisGeo
+openfigis/RFirmsGeo
+ramnathv/rCharts
+fishfollower/SAM/stockassessment
+taiyun/corrplot
+statnmap/SDMSelect
+ptaconet/rtunaatlas
+OpenSILEX/phisWSClientR
+eblondel/geoflow
--- a/test_r_cran_pkgs.txt
+++ b/test_r_cran_pkgs.txt
@ -0,0 +1,18 @@
+FLAssess:http://flr-project.org/R
+FLBRP:http://flr-project.org/R
+FLCore:http://flr-project.org/R
+FLEDA:http://flr-project.org/R
+FLFishery:http://flr-project.org/R
+FLFleet:http://flr-project.org/R
+FLSAM:http://flr-project.org/R
+FLXSA:http://flr-project.org/R
+FLa4a:http://flr-project.org/R
+FLash:http://flr-project.org/R
+FLife:http://flr-project.org/R
+SQLiteFL:http://flr-project.org/R
+aspic:http://flr-project.org/R
+biodyn:http://flr-project.org/R
+diags:http://flr-project.org/R  
+ggplotFL:http://flr-project.org/R
+lh:http://flr-project.org/R
+robis
--- a/test_r_cran_versioned_pkgs.txt
+++ b/test_r_cran_versioned_pkgs.txt
--- a/test_r_deb_pkgs.txt
+++ b/test_r_deb_pkgs.txt
@ -0,0 +1,219 @@
+graphicsmagick
+gsl-bin
+imagemagick
+libcurl4-openssl-dev
+libgeos-dev
+libgfortran5
+libglu1-mesa-dev
+libgs-dev
+libgsl0-dev
+libjq-dev
+libmagick++-dev
+libmono-2.0-1
+libmono-corlib2.0-cil
+libmono-http4.0-cil
+libmono-microsoft-visualbasic10.0-cil
+libmono-system-core4.0-cil
+libnetcdf-dev
+libnlopt-dev
+libproj-dev
+libprotobuf-dev
+librdf0-dev
+libsodium-dev
+libspatialite-dev
+libudunits2-dev
+libv8-3.14-dev
+mdbtools
+mencoder
+mesa-common-dev
+mono-runtime
+netcat
+netcdf-bin
+odbc-mdbtools
+p7zip-full
+postgresql-client
+proj-bin
+proj-data
+protobuf-compiler
+python-h5py
+r-cran-animation
+r-cran-bayesmix
+r-cran-bitops
+r-cran-calibrate
+r-cran-caret
+r-cran-chron
+r-cran-cleangeo
+r-cran-coda
+r-cran-colorspace
+r-cran-copula
+r-cran-corrplot
+r-cran-cowplot
+r-cran-curl
+r-cran-data.table
+r-cran-dbi
+r-cran-deoptimr
+r-cran-desctools
+r-cran-dichromat
+r-cran-digest
+r-cran-diptest
+r-cran-dismo
+r-cran-distr
+r-cran-doby
+r-cran-domc
+r-cran-doparallel
+r-cran-dplyr
+r-cran-dt
+r-cran-earth
+r-cran-ellipse
+r-cran-epir
+r-cran-evaluate
+r-cran-fields
+r-cran-fishmethods
+r-cran-flexmix
+r-cran-foreach
+r-cran-fpc
+r-cran-ga
+r-cran-gam
+r-cran-gdata
+r-cran-geojsonio
+r-cran-geometa
+r-cran-geonapi
+r-cran-geosapi
+r-cran-geosphere
+r-cran-ggplot2
+r-cran-googlevis
+r-cran-gplots
+r-cran-gridextra
+r-cran-gridgraphics
+r-cran-gsl
+r-cran-gtable
+r-cran-highlight
+r-cran-hmisc
+r-cran-htmltools
+r-cran-htmlwidgets
+r-cran-httr
+r-cran-igraph
+r-cran-jsonlite
+r-cran-kernlab
+r-cran-knitr
+r-cran-labeling
+r-cran-laf
+r-cran-lattice
+r-cran-lme4
+r-cran-locfit
+r-cran-lubridate
+r-cran-lwgeom
+r-cran-magick
+r-cran-magrittr
+r-cran-mapdata
+r-cran-maps
+r-cran-maptools
+r-cran-mapview
+r-cran-mass
+r-cran-matrix
+r-cran-mc2d
+r-cran-mclust
+r-cran-mcmcpack
+r-cran-memoise
+r-cran-mgcv
+r-cran-minicran
+r-cran-minqa
+r-cran-mnormt
+r-cran-modeltools
+r-cran-msm
+r-cran-multcomp
+r-cran-munsell
+r-cran-mvtnorm
+r-cran-ncdf4
+r-cran-nloptr
+r-cran-nnet
+r-cran-numderiv
+r-cran-openxlsx
+r-cran-ows4r
+r-cran-plotly
+r-cran-plotrix
+r-cran-plyr
+r-cran-prabclus
+r-cran-pryr
+r-cran-r.cache
+r-cran-r.matlab
+r-cran-r.methodss3
+r-cran-r.oo
+r-cran-r.utils
+r-cran-r2html
+r-cran-r2jags
+r-cran-r2winbugs
+r-cran-random
+r-cran-raster
+r-cran-rastervis
+r-cran-rcolorbrewer
+r-cran-rcpp
+r-cran-rcppeigen
+r-cran-rcurl
+r-cran-rdflib
+r-cran-readr
+r-cran-readxl
+r-cran-redland
+r-cran-repmis
+r-cran-reshape
+r-cran-reshape2
+r-cran-rgdal
+r-cran-rgeos
+r-cran-rgl
+r-cran-rgraphics
+r-cran-rjags
+r-cran-rjava
+r-cran-rjsonio
+r-cran-rlang
+r-cran-rmarkdown
+r-cran-robustbase
+r-cran-rpart
+r-cran-rpostgres
+r-cran-rpostgresql
+r-cran-rsdmx
+r-cran-rserve
+r-cran-rstan
+r-cran-runjags
+r-cran-rworldmap
+r-cran-sandwich
+r-cran-scales
+r-cran-sf
+r-cran-shapefiles
+r-cran-shiny
+r-cran-smatr
+r-cran-sn
+r-cran-snow
+r-cran-sodium
+r-cran-sp
+r-cran-spam
+r-cran-splines2
+r-cran-sqldf
+r-cran-stringr
+r-cran-survival
+r-cran-svglite
+r-cran-tclust
+r-cran-th.data
+r-cran-tidyr
+r-cran-tidyverse
+r-cran-tmb
+r-cran-trimcluster
+r-cran-urltools
+r-cran-viridis
+r-cran-whisker
+r-cran-wicket
+r-cran-withr
+r-cran-writexl
+r-cran-xml
+r-cran-xtable
+r-cran-xts
+r-cran-zen4r
+sox
+sshpass
+texlive
+texlive-base
+texlive-binaries
+texlive-formats-extra
+texlive-humanities
+texlive-latex-base
+texlive-latex-extra
+texlive-xetex
--- a/test_r_github_pkgs.txt
+++ b/test_r_github_pkgs.txt
@ -0,0 +1,17 @@
+flr/FLAssess
+flr/FLBEIA
+flr/FLCore
+flr/FLRDynState
+flr/FLash
+flr/FLash2
+flr/ggplotFL
+mawp/spict
+openfigis/RFigisGeo
+openfigis/RFirmsGeo
+ramnathv/rCharts
+fishfollower/SAM/stockassessment
+taiyun/corrplot
+statnmap/SDMSelect
+ptaconet/rtunaatlas
+OpenSILEX/phisWSClientR
+eblondel/geoflow