From aaddf3def62a8175f86b4f5b8a697ffd7a09121e Mon Sep 17 00:00:00 2001
From: Andrea Dell'Amico <adellam@sevenseas.org>
Date: Sat, 8 Apr 2023 19:36:20 +0200
Subject: [PATCH] Clean up the jupyter pkgs

---
 install2r-packages.txt        | 17 +----------------
 jupyter-image-r-cran-pkgs.txt | 33 +++++++++++++++++++++++++++++++++
 r_cran_pkgs.txt               |  4 +---
 3 files changed, 35 insertions(+), 19 deletions(-)
 create mode 100644 jupyter-image-r-cran-pkgs.txt

diff --git a/install2r-packages.txt b/install2r-packages.txt
index 9b12120..d6eea01 100644
--- a/install2r-packages.txt
+++ b/install2r-packages.txt
@@ -4,7 +4,6 @@ DBI
 DEoptimR
 DT
 DescTools
-FishLife
 GA
 HDInterval
 Hmisc
@@ -34,10 +33,7 @@ StanHeaders
 TAF
 TH.data
 TMB
-TMBhelper
-ThorsonUtilities
 TropFishR
-VSURF
 XML
 abind
 animation
@@ -48,7 +44,7 @@ assertthat
 backports
 base64enc
 bayesplot
-baysemix
+bayesmix
 bit
 bit64
 bitops
@@ -106,8 +102,6 @@ fdth
 fields
 fishmethods
 flexmix
-flr/FLash
-flr/FLash2
 fontawesome
 foreach
 fpc
@@ -156,7 +150,6 @@ jquerylib
 jsonlite
 kernlab
 knitr
-kobe
 labeling
 later
 lattice
@@ -165,7 +158,6 @@ lifecycle
 lme4
 locfit
 loo
-lowess
 lubridate
 lwgeom
 magick
@@ -176,7 +168,6 @@ maps
 maptools
 markdown
 matrixStats
-maxent
 mc2d
 mclust
 mefa4
@@ -266,7 +257,6 @@ shinythemes
 smatr
 sn
 snow
-snpar
 sodium
 sourcetools
 sp
@@ -306,7 +296,6 @@ viridisLite
 vroom
 waldo
 whisker
-wicket
 withr
 writexl
 xfun
@@ -321,7 +310,3 @@ pdftools
 nloptr
 properties
 neuralnet
-e1071
-select
-compute
-interpolate
diff --git a/jupyter-image-r-cran-pkgs.txt b/jupyter-image-r-cran-pkgs.txt
new file mode 100644
index 0000000..061442f
--- /dev/null
+++ b/jupyter-image-r-cran-pkgs.txt
@@ -0,0 +1,33 @@
+FLAssess:http://flr-project.org/R
+FLBRP:http://flr-project.org/R
+FLCore:http://flr-project.org/R
+FLEDA:http://flr-project.org/R
+FLFishery:http://flr-project.org/R
+FLFleet:http://flr-project.org/R
+FLSAM:http://flr-project.org/R
+FLXSA:http://flr-project.org/R
+FLa4a:http://flr-project.org/R
+FLash:http://flr-project.org/R
+FLash2:http://flr-project.org/R
+FLife:http://flr-project.org/R
+SQLiteFL:http://flr-project.org/R
+aspic:http://flr-project.org/R
+biodyn:http://flr-project.org/R
+diags:http://flr-project.org/R  
+ggplotFL:http://flr-project.org/R
+lh:http://flr-project.org/R
+d4storagehub4R
+e1071
+select
+compute
+interpolate
+FishLife
+TMBhelper
+ThorsonUtilities
+VSURF
+kobe
+lowess
+maxent
+snpar
+wicket
+
diff --git a/r_cran_pkgs.txt b/r_cran_pkgs.txt
index 941d9c3..84b9887 100644
--- a/r_cran_pkgs.txt
+++ b/r_cran_pkgs.txt
@@ -8,6 +8,7 @@ FLSAM:http://flr-project.org/R
 FLXSA:http://flr-project.org/R
 FLa4a:http://flr-project.org/R
 FLash:http://flr-project.org/R
+FLash2:http://flr-project.org/R
 FLife:http://flr-project.org/R
 SQLiteFL:http://flr-project.org/R
 aspic:http://flr-project.org/R
@@ -21,10 +22,7 @@ ows4R
 d4storagehub4R
 LBSPR
 purrr
-properties
-neuralnet
 e1071
 select
 compute
 interpolate
-