Dockerfile

@@ -15,7 +15,6 @@ RUN apt-get update --yes && \
     curl \
     jags \
     libxml2 \
-    libxt6 \
     git \
     gdal-bin \
     libgdal-dev \
@@ -29,7 +28,6 @@ RUN apt-get update --yes && \
     libharfbuzz-dev \
     libfribidi-dev \
     sshpass \
-    patch \
     p7zip-full \
     sox \
     imagemagick \
@@ -41,13 +39,12 @@ RUN apt-get update --yes && \
     fuse \
     zip \
     jq \
-    openjdk-8-jdk-headless \
-    openjdk-11-jdk-headless
+    openjdk-8-jdk-headless
 
 # Install the R packages we need, using the binary distribution
 # at https://packagemanager.rstudio.com/client/#/repos/1/overview
 ADD https://code-repo.d4science.org/gCubeSystem/r-packages-list/raw/branch/master/install2r-packages.txt /tmp
-RUN for f in `cat /tmp/install2r-packages.txt` ; do install2.r --error --skipinstalled --ncpus -1 $f || exit 1 ; done
+RUN for f in `cat /tmp/install2r-packages.txt` ; do install2.r --error --skipinstalled --ncpus -1 $f ; done
 
 # Non CRAN repositories
 ADD https://code-repo.d4science.org/gCubeSystem/r-packages-list/raw/branch/master/r_non_cran_pkgs.txt /tmp
@@ -55,7 +52,7 @@ RUN for l in `cat /tmp/r_non_cran_pkgs.txt` ; do \
     pkg=`echo $l | cut -d : -f 1` ; \
     mirror=`echo $l | cut -d : -f 2-` ; \
     Rscript --slave --no-site-file --no-init-file --no-save --no-restore-history \
-    -e "install.packages(pkgs='$pkg', repos=c('$mirror/'));" || exit 1 ; done
+    -e "install.packages(pkgs='$pkg', repos=c('$mirror/'));" ; done
 
 # Install some CRAN packages from source
 ADD https://code-repo.d4science.org/gCubeSystem/r-packages-list/raw/branch/master/jupyter-image-r-cran-pkgs.txt /tmp
@@ -63,7 +60,7 @@ RUN for cr in `cat /tmp/jupyter-image-r-cran-pkgs.txt` ; do \
     pkg=`echo $cr` ; \
     mirror='https://cloud.r-project.org' ; \
     Rscript --slave --no-site-file --no-init-file --no-save --no-restore-history \
-    -e "install.packages(pkgs='$pkg', repos=c('$mirror/'));" || exit 1 ; done
+    -e "install.packages(pkgs='$pkg', repos=c('$mirror/'));" ; done
 
 # From github
 ADD https://code-repo.d4science.org/gCubeSystem/r-packages-list/raw/branch/master/r_github_pkgs.txt /tmp