package org.gcube.data.analysis.nlphub; import java.io.IOException; import java.io.PrintWriter; import java.util.Arrays; import javax.servlet.ServletException; import javax.servlet.annotation.WebServlet; import javax.servlet.http.HttpServlet; import javax.servlet.http.HttpServletRequest; import javax.servlet.http.HttpServletResponse; import org.gcube.data.analysis.nlphub.legacy.JsonManager; import org.gcube.data.analysis.nlphub.nlp.RunnerCommander; import org.gcube.data.analysis.nlphub.session.SessionUtils; import org.slf4j.Logger; import org.slf4j.LoggerFactory; /** * Servlet implementation class NLPHub */ @WebServlet(asyncSupported = true, name = "NLPServlet", urlPatterns = { "/nlphub-servlet" }) public class NLPHub extends HttpServlet { private static final long serialVersionUID = 1L; private static final Logger logger = LoggerFactory.getLogger(NLPHub.class); /** * @see HttpServlet#HttpServlet() */ public NLPHub() { super(); // TODO Auto-generated constructor stub } /** * @see HttpServlet#doGet(HttpServletRequest request, HttpServletResponse * response) */ protected void doGet(HttpServletRequest request, HttpServletResponse response) throws ServletException, IOException { doWork(request, response); } /** * @see HttpServlet#doPost(HttpServletRequest request, HttpServletResponse * response) */ protected void doPost(HttpServletRequest request, HttpServletResponse response) throws ServletException, IOException { doWork(request, response); } private void doWork(HttpServletRequest request, HttpServletResponse response) throws ServletException, IOException { logger.debug("NLPHub"); SessionUtils sessionUtils=new SessionUtils(); String token = sessionUtils.getToken(request); if (request.getParameter("getInfo") != null) { getAlgorithmInfo(request, response, token); } else { runAlgorithms(request, response, token); } logger.debug("NLPHub work done"); } private void getAlgorithmInfo(HttpServletRequest request, HttpServletResponse response, String token) throws ServletException { PrintWriter writer = null; try { logger.info("GetAlgorithmInfo"); String dataMiner = request.getParameter("dataminer"); String algId = request.getParameter("algId"); logger.debug("NLPHub getAlgorithmInfo: [DataMiner=" + dataMiner + ", algorithmID=" + algId + "]"); String algoLink = "https://services.d4science.org/group/rprototypinglab/data-miner?OperatorId="; algoLink=algoLink+algId; logger.debug("Algorithm link: "+algoLink); writer = response.getWriter(); response.setContentType("application/json;charset=UTF-8"); writer.println(new JsonManager().getSuccessJsonResponse(algoLink)); } catch (Exception e) { logger.error("NLPHub error in GET AlgorithmInfo: " + e.getLocalizedMessage(), e); throw new ServletException("Error retrieving algorithm info!",e); } finally{ if(writer!=null){ writer.close(); } } } private void runAlgorithms(HttpServletRequest request, HttpServletResponse response, String token) throws ServletException, IOException { try { String dataMiner = request.getParameter("dataminer"); // dataMiner=java.net.URLDecoder.decode(dataMiner,"UTF-8"); String[] algs = request.getParameter("algs").split(","); String plink = request.getParameter("plink"); String annotations = request.getParameter("annotations"); logger.debug("NLPHub getAlgorithmInfo: [DataMiner=" + dataMiner + ", plink=" + plink + ", annotations=" + annotations + ", algorithms=" + Arrays.toString(algs) + "]"); for (int i = 0; i < algs.length; i++) { algs[i] = algs[i].trim(); } String maxWaitingTime = getServletConfig().getInitParameter("MaxWaitingTime"); String sleepTime = getServletConfig().getInitParameter("SleepTime"); logger.debug("NLPHub: [maxWaitingTime=" + maxWaitingTime + ", sleepTime=" + sleepTime + "]"); long maxWaitingTimeL = Long.parseLong(maxWaitingTime); long sleepTimeL = Long.parseLong(sleepTime); RunnerCommander commander = new RunnerCommander(dataMiner, algs, plink, annotations, token, response); commander.setSleepTime(sleepTimeL); commander.setMaxWaitingTime(maxWaitingTimeL); commander.startProcess(); } catch (Exception e) { logger.error("NLPHub runAlgorithms: " + e.getLocalizedMessage(), e); } } }