From f0736212f1919898614bb911f4a14823b177777d Mon Sep 17 00:00:00 2001
From: Massimiliano Assante <massimiliano.assante@isti.cnr.it>
Date: Mon, 30 Nov 2015 16:55:04 +0000
Subject: [PATCH] Initial import.

git-svn-id: http://svn.research-infrastructures.eu/public/d4science/gcube/trunk/portal/ldap-export-servlet@120490 82a268e6-3cf1-43bd-a215-b396298e98cf
---
 .classpath                                    |  32 ++
 .project                                      |  42 ++
 .settings/.jsdtscope                          |  13 +
 .settings/org.eclipse.core.resources.prefs    |   4 +
 .settings/org.eclipse.jdt.core.prefs          |   8 +
 .settings/org.eclipse.m2e.core.prefs          |   4 +
 .settings/org.eclipse.wst.common.component    |  10 +
 ....eclipse.wst.common.project.facet.core.xml |   7 +
 ...rg.eclipse.wst.jsdt.ui.superType.container |   1 +
 .../org.eclipse.wst.jsdt.ui.superType.name    |   1 +
 .settings/org.eclipse.wst.validation.prefs    |   2 +
 pom.xml                                       | 180 +++++++++
 .../portal/ldapexport/LDAPExportService.java  | 128 +++++++
 .../org/gcube/portal/ldapexport/LDAPSync.java | 360 ++++++++++++++++++
 src/main/webapp/WEB-INF/web.xml               |  20 +
 src/main/webapp/index.jsp                     |   7 +
 target/ldap-export-servlet.war                | Bin 0 -> 13730 bytes
 .../portal/ldapexport/LDAPExportService.class | Bin 0 -> 8057 bytes
 .../gcube/portal/ldapexport/LDAPSync.class    | Bin 0 -> 13492 bytes
 target/ldap-export-servlet/WEB-INF/web.xml    |  20 +
 target/ldap-export-servlet/index.jsp          |   7 +
 target/maven-archiver/pom.properties          |   5 +
 22 files changed, 851 insertions(+)
 create mode 100644 .classpath
 create mode 100644 .project
 create mode 100644 .settings/.jsdtscope
 create mode 100644 .settings/org.eclipse.core.resources.prefs
 create mode 100644 .settings/org.eclipse.jdt.core.prefs
 create mode 100644 .settings/org.eclipse.m2e.core.prefs
 create mode 100644 .settings/org.eclipse.wst.common.component
 create mode 100644 .settings/org.eclipse.wst.common.project.facet.core.xml
 create mode 100644 .settings/org.eclipse.wst.jsdt.ui.superType.container
 create mode 100644 .settings/org.eclipse.wst.jsdt.ui.superType.name
 create mode 100644 .settings/org.eclipse.wst.validation.prefs
 create mode 100644 pom.xml
 create mode 100644 src/main/java/org/gcube/portal/ldapexport/LDAPExportService.java
 create mode 100644 src/main/java/org/gcube/portal/ldapexport/LDAPSync.java
 create mode 100644 src/main/webapp/WEB-INF/web.xml
 create mode 100644 src/main/webapp/index.jsp
 create mode 100644 target/ldap-export-servlet.war
 create mode 100644 target/ldap-export-servlet/WEB-INF/classes/org/gcube/portal/ldapexport/LDAPExportService.class
 create mode 100644 target/ldap-export-servlet/WEB-INF/classes/org/gcube/portal/ldapexport/LDAPSync.class
 create mode 100644 target/ldap-export-servlet/WEB-INF/web.xml
 create mode 100644 target/ldap-export-servlet/index.jsp
 create mode 100644 target/maven-archiver/pom.properties

diff --git a/.classpath b/.classpath
new file mode 100644
index 0000000..91f2707
--- /dev/null
+++ b/.classpath
@@ -0,0 +1,32 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<classpath>
+	<classpathentry kind="src" output="target/classes" path="src/main/java">
+		<attributes>
+			<attribute name="optional" value="true"/>
+			<attribute name="maven.pomderived" value="true"/>
+		</attributes>
+	</classpathentry>
+	<classpathentry excluding="**" kind="src" output="target/classes" path="src/main/resources">
+		<attributes>
+			<attribute name="maven.pomderived" value="true"/>
+		</attributes>
+	</classpathentry>
+	<classpathentry kind="src" output="target/test-classes" path="src/test/java">
+		<attributes>
+			<attribute name="optional" value="true"/>
+			<attribute name="maven.pomderived" value="true"/>
+		</attributes>
+	</classpathentry>
+	<classpathentry kind="con" path="org.eclipse.m2e.MAVEN2_CLASSPATH_CONTAINER">
+		<attributes>
+			<attribute name="maven.pomderived" value="true"/>
+			<attribute name="org.eclipse.jst.component.dependency" value="/WEB-INF/lib"/>
+		</attributes>
+	</classpathentry>
+	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.7">
+		<attributes>
+			<attribute name="maven.pomderived" value="true"/>
+		</attributes>
+	</classpathentry>
+	<classpathentry kind="output" path="target/classes"/>
+</classpath>
diff --git a/.project b/.project
new file mode 100644
index 0000000..ef7e969
--- /dev/null
+++ b/.project
@@ -0,0 +1,42 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<projectDescription>
+	<name>ldap-export-servlet</name>
+	<comment></comment>
+	<projects>
+	</projects>
+	<buildSpec>
+		<buildCommand>
+			<name>org.eclipse.wst.jsdt.core.javascriptValidator</name>
+			<arguments>
+			</arguments>
+		</buildCommand>
+		<buildCommand>
+			<name>org.eclipse.jdt.core.javabuilder</name>
+			<arguments>
+			</arguments>
+		</buildCommand>
+		<buildCommand>
+			<name>org.eclipse.wst.common.project.facet.core.builder</name>
+			<arguments>
+			</arguments>
+		</buildCommand>
+		<buildCommand>
+			<name>org.eclipse.wst.validation.validationbuilder</name>
+			<arguments>
+			</arguments>
+		</buildCommand>
+		<buildCommand>
+			<name>org.eclipse.m2e.core.maven2Builder</name>
+			<arguments>
+			</arguments>
+		</buildCommand>
+	</buildSpec>
+	<natures>
+		<nature>org.eclipse.jem.workbench.JavaEMFNature</nature>
+		<nature>org.eclipse.wst.common.modulecore.ModuleCoreNature</nature>
+		<nature>org.eclipse.jdt.core.javanature</nature>
+		<nature>org.eclipse.m2e.core.maven2Nature</nature>
+		<nature>org.eclipse.wst.common.project.facet.core.nature</nature>
+		<nature>org.eclipse.wst.jsdt.core.jsNature</nature>
+	</natures>
+</projectDescription>
diff --git a/.settings/.jsdtscope b/.settings/.jsdtscope
new file mode 100644
index 0000000..b72a6a4
--- /dev/null
+++ b/.settings/.jsdtscope
@@ -0,0 +1,13 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<classpath>
+	<classpathentry kind="src" path="src/main/webapp"/>
+	<classpathentry kind="src" path="target/m2e-wtp/web-resources"/>
+	<classpathentry kind="con" path="org.eclipse.wst.jsdt.launching.JRE_CONTAINER"/>
+	<classpathentry kind="con" path="org.eclipse.wst.jsdt.launching.WebProject">
+		<attributes>
+			<attribute name="hide" value="true"/>
+		</attributes>
+	</classpathentry>
+	<classpathentry kind="con" path="org.eclipse.wst.jsdt.launching.baseBrowserLibrary"/>
+	<classpathentry kind="output" path=""/>
+</classpath>
diff --git a/.settings/org.eclipse.core.resources.prefs b/.settings/org.eclipse.core.resources.prefs
new file mode 100644
index 0000000..abdea9a
--- /dev/null
+++ b/.settings/org.eclipse.core.resources.prefs
@@ -0,0 +1,4 @@
+eclipse.preferences.version=1
+encoding//src/main/java=UTF-8
+encoding//src/main/resources=UTF-8
+encoding/<project>=UTF-8
diff --git a/.settings/org.eclipse.jdt.core.prefs b/.settings/org.eclipse.jdt.core.prefs
new file mode 100644
index 0000000..443e085
--- /dev/null
+++ b/.settings/org.eclipse.jdt.core.prefs
@@ -0,0 +1,8 @@
+eclipse.preferences.version=1
+org.eclipse.jdt.core.compiler.codegen.inlineJsrBytecode=enabled
+org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.7
+org.eclipse.jdt.core.compiler.compliance=1.7
+org.eclipse.jdt.core.compiler.problem.assertIdentifier=error
+org.eclipse.jdt.core.compiler.problem.enumIdentifier=error
+org.eclipse.jdt.core.compiler.problem.forbiddenReference=warning
+org.eclipse.jdt.core.compiler.source=1.7
diff --git a/.settings/org.eclipse.m2e.core.prefs b/.settings/org.eclipse.m2e.core.prefs
new file mode 100644
index 0000000..f897a7f
--- /dev/null
+++ b/.settings/org.eclipse.m2e.core.prefs
@@ -0,0 +1,4 @@
+activeProfiles=
+eclipse.preferences.version=1
+resolveWorkspaceProjects=true
+version=1
diff --git a/.settings/org.eclipse.wst.common.component b/.settings/org.eclipse.wst.common.component
new file mode 100644
index 0000000..b4fac8a
--- /dev/null
+++ b/.settings/org.eclipse.wst.common.component
@@ -0,0 +1,10 @@
+<?xml version="1.0" encoding="UTF-8"?><project-modules id="moduleCoreId" project-version="1.5.0">
+    <wb-module deploy-name="ldap-export-servlet">
+        <wb-resource deploy-path="/" source-path="/target/m2e-wtp/web-resources"/>
+        <wb-resource deploy-path="/" source-path="/src/main/webapp" tag="defaultRootSource"/>
+        <wb-resource deploy-path="/WEB-INF/classes" source-path="/src/main/java"/>
+        <wb-resource deploy-path="/WEB-INF/classes" source-path="/src/main/resources"/>
+        <property name="context-root" value="ldap-export-servlet"/>
+        <property name="java-output-path" value="/ldap-export-servlet/target/classes"/>
+    </wb-module>
+</project-modules>
diff --git a/.settings/org.eclipse.wst.common.project.facet.core.xml b/.settings/org.eclipse.wst.common.project.facet.core.xml
new file mode 100644
index 0000000..4045d87
--- /dev/null
+++ b/.settings/org.eclipse.wst.common.project.facet.core.xml
@@ -0,0 +1,7 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<faceted-project>
+  <fixed facet="wst.jsdt.web"/>
+  <installed facet="jst.web" version="2.3"/>
+  <installed facet="wst.jsdt.web" version="1.0"/>
+  <installed facet="java" version="1.7"/>
+</faceted-project>
diff --git a/.settings/org.eclipse.wst.jsdt.ui.superType.container b/.settings/org.eclipse.wst.jsdt.ui.superType.container
new file mode 100644
index 0000000..3bd5d0a
--- /dev/null
+++ b/.settings/org.eclipse.wst.jsdt.ui.superType.container
@@ -0,0 +1 @@
+org.eclipse.wst.jsdt.launching.baseBrowserLibrary
\ No newline at end of file
diff --git a/.settings/org.eclipse.wst.jsdt.ui.superType.name b/.settings/org.eclipse.wst.jsdt.ui.superType.name
new file mode 100644
index 0000000..05bd71b
--- /dev/null
+++ b/.settings/org.eclipse.wst.jsdt.ui.superType.name
@@ -0,0 +1 @@
+Window
\ No newline at end of file
diff --git a/.settings/org.eclipse.wst.validation.prefs b/.settings/org.eclipse.wst.validation.prefs
new file mode 100644
index 0000000..04cad8c
--- /dev/null
+++ b/.settings/org.eclipse.wst.validation.prefs
@@ -0,0 +1,2 @@
+disabled=06target
+eclipse.preferences.version=1
diff --git a/pom.xml b/pom.xml
new file mode 100644
index 0000000..4673839
--- /dev/null
+++ b/pom.xml
@@ -0,0 +1,180 @@
+<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
+	xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
+	<parent>
+		<artifactId>maven-parent</artifactId>
+		<groupId>org.gcube.tools</groupId>
+		<version>1.0.0</version>
+		<relativePath />
+	</parent>
+
+	<modelVersion>4.0.0</modelVersion>
+	<groupId>org.gcube.portal</groupId>
+	<artifactId>ldap-export-servlet</artifactId>
+	<packaging>war</packaging>
+	<version>1.0.0-SNAPSHOT</version>
+	<name>ldap-export-servlet Maven Webapp</name>
+	<url>http://maven.apache.org</url>
+	<description>This component read periodically exports users and their groups in LDAP</description>
+	<properties>
+		<java-version>1.7</java-version>
+		<liferay-version>6.0.6</liferay-version>
+		<distroDirectory>${project.basedir}/distro</distroDirectory>
+		<webappDirectory>${project.build.directory}/${project.build.finalName}</webappDirectory>
+		<distroDirectory>distro</distroDirectory>
+
+		<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
+		<project.reporting.outputEncoding>UTF-8</project.reporting.outputEncoding>
+
+	</properties>
+
+	<scm>
+		<url>http://svn.d4science.research-infrastructures.eu/gcube/trunk/portal/${project.artifactId}</url>
+	</scm>
+	<dependencyManagement>
+		<dependencies>
+			<dependency>
+				<groupId>org.gcube.distribution</groupId>
+				<artifactId>maven-portal-bom</artifactId>
+				<version>LATEST</version>
+				<type>pom</type>
+				<scope>import</scope>
+			</dependency>
+		</dependencies>
+	</dependencyManagement>
+	<dependencies>
+		<dependency>
+			<groupId>org.gcube.common.portal</groupId>
+			<artifactId>portal-manager</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>org.gcube.portal</groupId>
+			<artifactId>custom-portal-handler</artifactId>
+			<scope>provided</scope>
+		</dependency>
+		<dependency>
+			<groupId>org.gcube.resources.discovery</groupId>
+			<artifactId>ic-client</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>org.gcube.core</groupId>
+			<artifactId>common-encryption</artifactId>
+			<scope>provided</scope>
+		</dependency>
+		<dependency>
+			<groupId>com.sun.mail</groupId>
+			<artifactId>javax.mail</artifactId>
+			<scope>provided</scope>
+		</dependency>
+		<dependency>
+			<groupId>com.liferay.portal</groupId>
+			<artifactId>portal-service</artifactId>
+			<scope>provided</scope>
+		</dependency>
+		<dependency>
+			<groupId>javax.portlet</groupId>
+			<artifactId>portlet-api</artifactId>
+			<scope>provided</scope>
+		</dependency>
+		<dependency>
+			<groupId>javax.servlet</groupId>
+			<artifactId>servlet-api</artifactId>
+			<version>2.3</version>
+			<scope>provided</scope>
+		</dependency>
+		<dependency>
+			<groupId>javax.servlet.jsp</groupId>
+			<artifactId>jsp-api</artifactId>
+			<version>2.0</version>
+			<scope>provided</scope>
+		</dependency>
+		<dependency>
+			<groupId>org.slf4j</groupId>
+			<artifactId>slf4j-api</artifactId>
+			<scope>provided</scope>
+		</dependency>
+		<dependency>
+			<groupId>junit</groupId>
+			<artifactId>junit</artifactId>
+			<version>3.8.1</version>
+			<scope>test</scope>
+		</dependency>
+	</dependencies>
+	<build>
+		<finalName>ldap-export-servlet</finalName>
+		<plugins>
+			<plugin>
+				<groupId>org.apache.maven.plugins</groupId>
+				<artifactId>maven-war-plugin</artifactId>
+				<version>2.1.1</version>
+				<executions>
+					<execution>
+						<phase>compile</phase>
+						<goals>
+							<goal>exploded</goal>
+						</goals>
+					</execution>
+				</executions>
+				<configuration>
+					<webappDirectory>${webappDirectory}</webappDirectory>
+				</configuration>
+			</plugin>
+			<plugin>
+				<groupId>org.apache.maven.plugins</groupId>
+				<artifactId>maven-compiler-plugin</artifactId>
+				<version>2.3.2</version>
+				<configuration>
+					<source>1.7</source>
+					<target>1.7</target>
+				</configuration>
+			</plugin>
+			<!-- SA Plugin -->
+			<plugin>
+				<groupId>org.apache.maven.plugins</groupId>
+				<artifactId>maven-assembly-plugin</artifactId>
+				<version>2.2</version>
+				<configuration>
+					<descriptors>
+						<descriptor>${distroDirectory}/descriptor.xml</descriptor>
+					</descriptors>
+				</configuration>
+				<executions>
+					<execution>
+						<id>servicearchive</id>
+						<phase>install</phase>
+						<goals>
+							<goal>single</goal>
+						</goals>
+					</execution>
+				</executions>
+			</plugin>
+			<plugin>
+				<groupId>org.apache.maven.plugins</groupId>
+				<artifactId>maven-resources-plugin</artifactId>
+				<version>2.5</version>
+				<executions>
+					<execution>
+						<id>copy-profile</id>
+						<phase>install</phase>
+						<goals>
+							<goal>copy-resources</goal>
+						</goals>
+						<configuration>
+							<outputDirectory>target</outputDirectory>
+							<resources>
+								<resource>
+									<directory>${distroDirectory}</directory>
+									<filtering>true</filtering>
+									<includes>
+										<include>profile.xml</include>
+									</includes>
+								</resource>
+							</resources>
+						</configuration>
+					</execution>
+				</executions>
+			</plugin>
+		</plugins>
+	</build>
+</project>
+  
+
diff --git a/src/main/java/org/gcube/portal/ldapexport/LDAPExportService.java b/src/main/java/org/gcube/portal/ldapexport/LDAPExportService.java
new file mode 100644
index 0000000..0a8f351
--- /dev/null
+++ b/src/main/java/org/gcube/portal/ldapexport/LDAPExportService.java
@@ -0,0 +1,128 @@
+package org.gcube.portal.ldapexport;
+
+import static org.gcube.resources.discovery.icclient.ICFactory.clientFor;
+import static org.gcube.resources.discovery.icclient.ICFactory.queryFor;
+
+import java.io.IOException;
+import java.util.List;
+import java.util.concurrent.Executors;
+import java.util.concurrent.ScheduledExecutorService;
+import java.util.concurrent.TimeUnit;
+
+import javax.servlet.ServletException;
+import javax.servlet.http.HttpServlet;
+import javax.servlet.http.HttpServletRequest;
+import javax.servlet.http.HttpServletResponse;
+
+import org.gcube.common.encryption.StringEncrypter;
+import org.gcube.common.portal.PortalContext;
+import org.gcube.common.resources.gcore.ServiceEndpoint;
+import org.gcube.common.resources.gcore.ServiceEndpoint.AccessPoint;
+import org.gcube.common.resources.gcore.ServiceEndpoint.Property;
+import org.gcube.common.resources.gcore.utils.Group;
+import org.gcube.common.scope.api.ScopeProvider;
+import org.gcube.resources.discovery.client.api.DiscoveryClient;
+import org.gcube.resources.discovery.client.queries.api.SimpleQuery;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
+
+
+@SuppressWarnings("serial")
+public class LDAPExportService extends HttpServlet {
+
+	private static final Logger _log = LoggerFactory.getLogger(LDAPExportService.class);
+
+	private  static final String LDAP_SERVER_NAME = "LDAPServer";
+	private  static final String LDAP_SERVER_FILTER_NAME = "filter";
+	private  static final String LDAP_SERVER_PRINCPAL_NAME = "ldapPrincipal";
+
+	private static final int LDAP_MINUTES_DELAY = 10;
+	
+	private String portalName; 
+	private String ldapUrl;
+	private String filter; 
+	private String principal;
+	private String ldapPassword;
+	
+	public void init() {
+		portalName = PortalContext.getPortalInstanceName();
+		
+		PortalContext context = PortalContext.getConfiguration();	
+		String scope = "/" + context.getInfrastructureName();
+		ScopeProvider.instance.set(scope);
+	
+		SimpleQuery query = queryFor(ServiceEndpoint.class);
+		query.addCondition("$resource/Profile/Category/text() eq 'Portal'");
+		query.addCondition("$resource/Profile/Name/text() eq '" + portalName + "'");
+
+		DiscoveryClient<ServiceEndpoint> client = clientFor(ServiceEndpoint.class);
+
+		List<ServiceEndpoint> list = client.submit(query);
+		if (list == null || list.isEmpty()) {
+			_log.error("Could not find any Service endpoint registred in the infrastructure for this portal: " + portalName);
+		}
+		else  if (list.size() > 1) {
+			_log.warn("Found more than one Service endpoint registred in the infrastructure for this portal: " + portalName);
+		}
+		else {
+			for (ServiceEndpoint res : list) {
+				Group<AccessPoint> apGroup =  res.profile().accessPoints();
+				AccessPoint[] accessPoints = (AccessPoint[]) apGroup.toArray(new AccessPoint[apGroup.size()]);
+				for (int i = 0; i < accessPoints.length; i++) {
+					if (accessPoints[i].name().compareTo(LDAP_SERVER_NAME) == 0) {
+						_log.info("Found credentials for " + LDAP_SERVER_NAME);
+						AccessPoint found = accessPoints[i];
+						ldapUrl = found.address();
+						String encrPassword = found.password();						
+						try {
+							ldapPassword = StringEncrypter.getEncrypter().decrypt( encrPassword);
+						} catch (Exception e) {
+							_log.error("Something went wrong while decrypting password for " + LDAP_SERVER_NAME);
+							e.printStackTrace();
+						}
+						Group<Property> propGroup =  found.properties();
+						Property[] props = (Property[]) propGroup.toArray(new Property[propGroup.size()]);
+						for (int j = 0; j < props.length; j++) {
+							if (props[j].name().compareTo(LDAP_SERVER_FILTER_NAME) == 0) {
+								_log.info("\tFound properties of " + LDAP_SERVER_FILTER_NAME);
+								String encrValue = props[j].value();			
+								System.out.println("Filter encrypted = " + encrValue);
+								try {
+									filter = StringEncrypter.getEncrypter().decrypt(encrValue);
+								} catch (Exception e) {
+									_log.error("Something went wrong while decrypting value for " + LDAP_SERVER_FILTER_NAME);
+									e.printStackTrace();
+								}
+							}
+							else if (props[j].name().compareTo(LDAP_SERVER_PRINCPAL_NAME) == 0) {
+								_log.info("\tFound properties of " + LDAP_SERVER_PRINCPAL_NAME);
+								String encrValue = props[j].value();						
+								try {
+									principal = StringEncrypter.getEncrypter().decrypt(encrValue);
+								} catch (Exception e) {
+									_log.error("Something went wrong while decrypting value for " + LDAP_SERVER_PRINCPAL_NAME);
+									e.printStackTrace();
+								}
+							}
+						}
+						
+					}
+				}
+				
+			}
+		}
+	}
+
+	protected void doGet(HttpServletRequest request, HttpServletResponse response) throws ServletException, IOException {
+		
+		ScheduledExecutorService ldapScheduler = Executors.newScheduledThreadPool(1);
+		ldapScheduler.scheduleAtFixedRate(new LDAPSync(ldapUrl, filter, principal, ldapPassword), 0, LDAP_MINUTES_DELAY, TimeUnit.MINUTES);
+		
+		String toReturn =  "<DIV>LDAPSync SCRIPT Started ... </DIV>";
+	
+		response.setContentType("text/html");		
+		response.getWriter().write(toReturn); 
+	}
+
+	protected void doPost(HttpServletRequest request, HttpServletResponse response) throws ServletException, IOException {}
+}
\ No newline at end of file
diff --git a/src/main/java/org/gcube/portal/ldapexport/LDAPSync.java b/src/main/java/org/gcube/portal/ldapexport/LDAPSync.java
new file mode 100644
index 0000000..55d9d47
--- /dev/null
+++ b/src/main/java/org/gcube/portal/ldapexport/LDAPSync.java
@@ -0,0 +1,360 @@
+package org.gcube.portal.ldapexport;
+
+import java.util.ArrayList;
+import java.util.List;
+import java.util.Properties;
+import java.util.Random;
+
+import javax.naming.Context;
+import javax.naming.NamingEnumeration;
+import javax.naming.NamingException;
+import javax.naming.directory.Attribute;
+import javax.naming.directory.Attributes;
+import javax.naming.directory.BasicAttribute;
+import javax.naming.directory.BasicAttributes;
+import javax.naming.directory.DirContext;
+import javax.naming.directory.InitialDirContext;
+import javax.naming.directory.SearchControls;
+import javax.naming.directory.SearchResult;
+
+import org.gcube.common.portal.PortalContext;
+import org.gcube.portal.custom.communitymanager.OrganizationsUtil;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
+
+import com.liferay.portal.kernel.cache.CacheRegistryUtil;
+import com.liferay.portal.kernel.exception.PortalException;
+import com.liferay.portal.kernel.exception.SystemException;
+import com.liferay.portal.model.Organization;
+import com.liferay.portal.model.User;
+import com.liferay.portal.service.OrganizationLocalServiceUtil;
+import com.liferay.portal.service.UserLocalServiceUtil;
+
+public class LDAPSync implements Runnable {
+	private static final Logger _log = LoggerFactory.getLogger(LDAPSync.class);
+
+	private static final String LDAP_ORG_FILTER = "(objectClass=organizationalUnit)";
+	private static final String LDAP_GROUP_FILTER = "(objectClass=posixGroup)";
+
+	private String ldapUrl;
+	private String filter; 
+	private String principal;
+	private String pwd;
+
+
+	public LDAPSync(String ldapUrl, String filter, String principal, String pwd) {
+		this.ldapUrl = ldapUrl;
+		this.filter = filter;
+		this.principal = principal;
+		this.pwd = pwd;
+		_log.info("Starting LDAPSync over " + ldapUrl);
+	}
+
+	/**
+	 * 
+	 * @return the Liferay mapped as Root Organization
+	 */
+	private Organization getRootVO() {
+		String rootVoName = PortalContext.getConfiguration().getInfrastructureName();
+		_log.debug("Root organization name found: " + rootVoName);
+
+		//start of iteration of the actual groups
+		List<Organization> organizations;
+		try {
+			organizations = OrganizationLocalServiceUtil.getOrganizations(0, OrganizationLocalServiceUtil.getOrganizationsCount());
+			for (Organization organization : organizations) {
+				if (organization.getName().equals(rootVoName)) {
+					return organization;
+				}
+			}
+		} 
+		catch (SystemException e) {
+			_log.error("There were problems retrieving root organization", e);
+		}
+		_log.error("Could not find any root organization");
+		return null;
+	}
+
+
+
+
+	@Override
+	public void run() {
+		_log.debug("Reading Portal Users ...");
+		List<User> users = null; 
+		try {
+			users = getAllLiferayUsers();
+			_log.debug("\n***Read " + users.size() + " from LR DB\n");
+		} catch (Exception e1) {
+			e1.printStackTrace();
+		}
+		_log.debug("Reading Portal Organizations ...");
+		Organization rootVO = getRootVO();
+
+		_log.debug("Initializing LDAP exporter ...");
+
+		Properties env = new Properties();
+		env.put(Context.INITIAL_CONTEXT_FACTORY,"com.sun.jndi.ldap.LdapCtxFactory");
+		env.put(Context.PROVIDER_URL, ldapUrl);
+		env.put(Context.SECURITY_PRINCIPAL, principal);
+		env.put(Context.SECURITY_CREDENTIALS, pwd);
+
+		try {
+			DirContext ctx = new InitialDirContext(env);
+			_log.debug("Initiating LDAP Sync ...");
+			//update the whole list of users (uid="+username+",ou=People,o=Liferay,ou=Organizations,dc=d4science,dc=org")
+			exportSingleUsers(ctx, env, users);
+
+			//crate or update the whole list of organizations (objectClass=organizationalUnit, ou="+orgName+",dc=d4science,dc=org) and groups ( objectClass=top and POSIXGroup)
+			updateGroups(ctx, rootVO);
+
+		} catch (NamingException e) {
+			_log.error("Something went Wrong during LDAP Sync in Exporting to LDAP");
+			e.printStackTrace();
+		} catch (SystemException es) {
+			_log.error("Something went Wrong during LDAP Sync in retrieving Liferay Organization");
+			es.printStackTrace();
+		}
+	}
+
+	private void updateGroups(DirContext ctx, Organization root) throws NamingException, SystemException {
+		String subCtx = getOrgSubContext(root.getName());
+		if (!checkIfLDAPOrganizationalUnitExists(ctx, subCtx))
+			createOrganizationalUnit(ctx, subCtx);
+		for (Organization org : root.getSuborganizations()) {
+			String orgSubCtx = "ou="+org.getName()+","+subCtx;
+			if (!checkIfLDAPOrganizationalUnitExists(ctx, orgSubCtx))
+				createOrganizationalUnit(ctx, orgSubCtx);
+			for (Organization vre : org.getSuborganizations()) {
+				String vreSubCtx = "cn="+vre.getName()+","+orgSubCtx;
+				if (!checkIfLDAPGroupExists(ctx, vreSubCtx))
+					createGroupVRE(ctx, vreSubCtx, vre.getName());
+				//update the list of users in such VRE
+				updateUsersInGroup(ctx, vreSubCtx, vre);
+			}
+		}			
+	}
+	
+	private void updateUsersInGroup(DirContext ctx, String vreSubCtx, Organization vre) throws NamingException, SystemException {
+		List<User> users = UserLocalServiceUtil.getOrganizationUsers(vre.getOrganizationId());
+		for (User userObj : users) {
+			String user = userObj.getScreenName();
+			try {				
+				Attribute memberUid = new BasicAttribute("memberUid");
+				memberUid.add(user);
+				Attributes attributes = new BasicAttributes();
+				attributes.put(memberUid);					
+				ctx.modifyAttributes(vreSubCtx, DirContext.ADD_ATTRIBUTE, attributes);
+				_log.info("Adding user: " + user);
+			}
+			catch (javax.naming.directory.AttributeInUseException ex) {
+				_log.trace("Not adding already existing user: " + user);
+			}
+
+		}
+
+	}
+
+	private void exportSingleUsers(DirContext ctx, Properties env, List<User> users) throws NamingException {
+		for (User user : users) {
+			updateUserInLDAP(user.getScreenName(), user.getFirstName(), user.getLastName(), user.getFullName(), user.getEmailAddress(), "{SHA}"+user.getPassword(), ctx, filter);
+			//_log.debug("Updated " + user.getScreenName());
+		}			
+		_log.debug("LDAP Users Sync cycle done");
+		if (! users.isEmpty())
+			_log.info("LDAP Users Sync Completed OK!");
+		else
+			_log.warn("LDAP Users Sync cycle skipped this time");
+	}
+	/**
+	 * 
+	 * @param ctx
+	 * @param subContext
+	 * @throws NamingException
+	 */
+	private void createOrganizationalUnit(DirContext ctx, String subContext) throws NamingException {
+		Attributes attributes = new BasicAttributes();
+		Attribute objectClass = new BasicAttribute("objectClass");
+		objectClass.add("organizationalUnit");
+		attributes.put(objectClass);
+
+		Attribute description = new BasicAttribute("description");
+		description.add("Liferay Organization");		
+		attributes.put(description);		
+		ctx.createSubcontext(subContext, attributes);
+		_log.info("Added " + subContext);
+	}
+	/**
+	 * 
+	 * @param ctx
+	 * @param subContext
+	 * @param vreName
+	 * @throws NamingException
+	 */
+	private void createGroupVRE(DirContext ctx, String subContext, String vreName) throws NamingException {		
+		Attributes attributes = new BasicAttributes();
+
+		Attribute objectClass = new BasicAttribute("objectClass");
+		objectClass.add("top");
+		objectClass.add("posixGroup");
+		//		objectClass.add("researchProject");
+		//		objectClass.add("groupOfMembers");		
+		attributes.put(objectClass);
+
+		Attribute cn = new BasicAttribute("cn");
+		cn.add(vreName);
+		attributes.put(cn);
+
+		Attribute gidNumber = new BasicAttribute("gidNumber");
+		gidNumber.add(getRandomPOSIXidentifier(ctx));
+		attributes.put(gidNumber);
+
+		ctx.createSubcontext(subContext, attributes);
+		_log.info("Added " + subContext);
+	}
+
+	private String getOrgSubContext(String orgName) {
+		return "ou="+orgName+",dc=d4science,dc=org";
+	}
+	/**
+	 * 
+	 * @param ctx
+	 * @param orgSubctx
+	 * @return true if exists
+	 */
+	private boolean checkIfLDAPOrganizationalUnitExists(DirContext ctx, String orgSubctx) {
+		SearchControls ctls = new SearchControls();
+		ctls.setSearchScope(SearchControls.SUBTREE_SCOPE);
+		NamingEnumeration<SearchResult> answer;
+		try {
+			answer = ctx.search(orgSubctx, LDAP_ORG_FILTER, ctls);
+		} catch (NamingException e) {
+			_log.debug("not found in LDAP (will add it): Organization: " + orgSubctx);
+			return false;
+		}
+		boolean toReturn = answer.hasMoreElements();
+		_log.debug("Organization: " + orgSubctx + " exists? " + toReturn);
+		return toReturn;
+	}
+	/**
+	 * 
+	 * @param ctx
+	 * @param groupSubctx
+	 * @return true if exists
+	 */
+	private boolean checkIfLDAPGroupExists(DirContext ctx, String groupSubctx) {
+		SearchControls ctls = new SearchControls();
+		ctls.setSearchScope(SearchControls.SUBTREE_SCOPE);
+		NamingEnumeration<SearchResult> answer;
+		try {
+			answer = ctx.search(groupSubctx, LDAP_GROUP_FILTER, ctls);
+		} catch (NamingException e) {
+			_log.debug("not found in LDAP (will add it): Group: " + groupSubctx);
+			return false;
+		}
+		boolean toReturn = answer.hasMoreElements();
+		_log.debug("Group: " + groupSubctx + " exists? " + toReturn);
+		return toReturn;
+	}
+	/**
+	 * 
+	 * @param username
+	 * @return the single user subContext
+	 */
+	private String getSubContext(String username) {
+		return "uid="+username+",ou=People,o=Liferay,ou=Organizations,dc=d4science,dc=org";
+	}
+	/**
+	 * 
+	 * @param username
+	 * @param ctx
+	 * @param filter
+	* @return true if exists
+	 */
+	private boolean checkIfLDAPUserExists(String username, DirContext ctx, String filter) {
+		SearchControls ctls = new SearchControls();
+		ctls.setSearchScope(SearchControls.SUBTREE_SCOPE);
+		NamingEnumeration<SearchResult> answer;
+		try {
+			answer = ctx.search(getSubContext(username), filter, ctls);
+		} catch (NamingException e) {
+			_log.info("user: " + username + " not found in LDAP, trying to export it");
+			return false;
+		}
+		return answer.hasMoreElements();
+	}
+	/**
+	 * 
+	 * @param username
+	 * @param name
+	 * @param lastName
+	 * @param email
+	 * @param passwd
+	 * @param ctx
+	 * @throws NamingException
+	 */
+	private void updateUserInLDAP(String username, String name, String lastName, String fullName, String email, String passwd, DirContext ctx, String filter) throws NamingException {
+		Attributes attributes=new BasicAttributes();
+		Attribute objectClass=new BasicAttribute("objectClass");
+		objectClass.add("inetOrgPerson");
+		attributes.put(objectClass);
+
+		//the main ldap server uses 'givenName' for the First name, 'cn' for "first name last name', 'sn' for the last name
+		Attribute givenName = new BasicAttribute("givenName");
+		Attribute cn = new BasicAttribute("cn");
+		Attribute sn = new BasicAttribute("sn");		
+		Attribute mail = new BasicAttribute("mail");
+		Attribute userPassword = new BasicAttribute("userPassword");
+
+		givenName.add(name);
+		cn.add(fullName);
+		sn.add(lastName);		
+		mail.add(email);
+		userPassword.add(passwd);
+
+		attributes.put(givenName);
+		attributes.put(cn);
+		attributes.put(sn);		
+		attributes.put(mail);
+		attributes.put(userPassword);
+
+		if (checkIfLDAPUserExists(username, ctx, filter)) {
+			//_log.debug("User " +  username + " already exists, replacing attributes");
+			ctx.modifyAttributes(getSubContext(username), DirContext.REPLACE_ATTRIBUTE, attributes);
+		}
+		else {
+			ctx.createSubcontext(getSubContext(username),attributes);
+			_log.debug("New User Found with uid=" +  username + " created");
+		}
+	}
+	/**
+	 * 
+	 * @return the whole list of users 
+	 */
+	private List<User> getAllLiferayUsers() {
+		String infraName = PortalContext.getConfiguration().getInfrastructureName();		
+		_log.info("TRY Reading non chached users belonging to: /" + infraName);
+
+		List<User> toReturn = new ArrayList<User>();
+		Organization rootInfra;
+		try {
+			CacheRegistryUtil.clear(); //needed to avoid cache use by liferay API
+			rootInfra = OrganizationLocalServiceUtil.getOrganization(OrganizationsUtil.getCompany().getCompanyId(), infraName);
+			toReturn = UserLocalServiceUtil.getOrganizationUsers(rootInfra.getOrganizationId());
+		} catch (PortalException | SystemException e) {
+			_log.error("Error during LDAP Sync, could not retrieve users from LR DB: " + e.getMessage());
+		}
+		return toReturn;
+	}
+	/**
+	 * 
+	 * @return an integer between 1000 and 2147483647
+	 */
+	private String getRandomPOSIXidentifier(DirContext ctx) {
+		final int Low = 1000;
+		final int High = 2147483647;
+		Random r = new Random();
+		int toReturn = r.nextInt(High-Low) + Low;
+		return toReturn+"";
+	}
+}
diff --git a/src/main/webapp/WEB-INF/web.xml b/src/main/webapp/WEB-INF/web.xml
new file mode 100644
index 0000000..07ae064
--- /dev/null
+++ b/src/main/webapp/WEB-INF/web.xml
@@ -0,0 +1,20 @@
+<!DOCTYPE web-app PUBLIC
+ "-//Sun Microsystems, Inc.//DTD Web Application 2.3//EN"
+ "http://java.sun.com/dtd/web-app_2_3.dtd" >
+
+<web-app>
+	<display-name>LDAP Export servlet</display-name>
+
+	<servlet>
+		<servlet-name>start-ldap-export</servlet-name>
+		<servlet-class>org.gcube.portal.ldapexport.LDAPExportService</servlet-class>
+	</servlet>
+	
+	<servlet-mapping>
+		<servlet-name>start-ldap-export</servlet-name>
+		<url-pattern>/start-ldap-export</url-pattern>
+	</servlet-mapping>
+
+
+
+</web-app>
diff --git a/src/main/webapp/index.jsp b/src/main/webapp/index.jsp
new file mode 100644
index 0000000..7f6f0e4
--- /dev/null
+++ b/src/main/webapp/index.jsp
@@ -0,0 +1,7 @@
+<html>
+<body>
+<h2>Hello From D4Science LDAP Export service!</h2>
+
+<a href="./start-ldap-export">RUN D4Science LDAP Export service (repeat: every 10 minutes [Default])</a>
+</body>
+</html>
diff --git a/target/ldap-export-servlet.war b/target/ldap-export-servlet.war
new file mode 100644
index 0000000000000000000000000000000000000000..b4d8b691fc14ec3b675ea0cf680c94ba16fef4af
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diff --git a/target/ldap-export-servlet/WEB-INF/web.xml b/target/ldap-export-servlet/WEB-INF/web.xml
new file mode 100644
index 0000000..07ae064
--- /dev/null
+++ b/target/ldap-export-servlet/WEB-INF/web.xml
@@ -0,0 +1,20 @@
+<!DOCTYPE web-app PUBLIC
+ "-//Sun Microsystems, Inc.//DTD Web Application 2.3//EN"
+ "http://java.sun.com/dtd/web-app_2_3.dtd" >
+
+<web-app>
+	<display-name>LDAP Export servlet</display-name>
+
+	<servlet>
+		<servlet-name>start-ldap-export</servlet-name>
+		<servlet-class>org.gcube.portal.ldapexport.LDAPExportService</servlet-class>
+	</servlet>
+	
+	<servlet-mapping>
+		<servlet-name>start-ldap-export</servlet-name>
+		<url-pattern>/start-ldap-export</url-pattern>
+	</servlet-mapping>
+
+
+
+</web-app>
diff --git a/target/ldap-export-servlet/index.jsp b/target/ldap-export-servlet/index.jsp
new file mode 100644
index 0000000..7f6f0e4
--- /dev/null
+++ b/target/ldap-export-servlet/index.jsp
@@ -0,0 +1,7 @@
+<html>
+<body>
+<h2>Hello From D4Science LDAP Export service!</h2>
+
+<a href="./start-ldap-export">RUN D4Science LDAP Export service (repeat: every 10 minutes [Default])</a>
+</body>
+</html>
diff --git a/target/maven-archiver/pom.properties b/target/maven-archiver/pom.properties
new file mode 100644
index 0000000..0d297b8
--- /dev/null
+++ b/target/maven-archiver/pom.properties
@@ -0,0 +1,5 @@
+#Generated by Maven
+#Mon Nov 30 17:15:06 CET 2015
+version=0.0.1-SNAPSHOT
+groupId=org.gcube.portal
+artifactId=ldap-export-servlet