gCubeSystem
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information-system-model
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Reorganizing model

This commit is contained in:
Luca Frosini 2019-10-24 11:26:49 +02:00
parent fa2e3d5983
commit a9a1ab83ce
44 changed files with 439 additions and 300 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

19
src/main/java/org/gcube/informationsystem/base/impl/ERImpl.java
View File

@ -3,8 +3,11 @@
*/
package org.gcube.informationsystem.base.impl;
import java.io.StringWriter;
import org.gcube.informationsystem.base.reference.ER;
import org.gcube.informationsystem.base.reference.properties.Header;
import org.gcube.informationsystem.utils.ISMapper;
import com.fasterxml.jackson.annotation.JsonTypeName;
@ -34,4 +37,20 @@ public abstract class ERImpl extends ISManageableImpl implements ER {
public void setHeader(Header header){
this.header = header;
}
@Override
public String toString(){
StringWriter stringWriter = new StringWriter();
try {
ISMapper.marshal(this, stringWriter);
return stringWriter.toString();
}catch(Exception e){
try {
ISMapper.marshal(this.header, stringWriter);
return stringWriter.toString();
} catch(Exception e1){
return super.toString();
}
}
}
}

14
src/main/java/org/gcube/informationsystem/base/impl/ISManageableImpl.java
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@ -3,7 +3,10 @@
*/
package org.gcube.informationsystem.base.impl;
import java.io.StringWriter;
import org.gcube.informationsystem.base.reference.ISManageable;
import org.gcube.informationsystem.utils.ISMapper;
/**
* @author Luca Frosini (ISTI - CNR)
@ -19,4 +22,15 @@ public class ISManageableImpl implements ISManageable {
public ISManageableImpl(){
}
@Override
public String toString(){
StringWriter stringWriter = new StringWriter();
try {
ISMapper.marshal(this, stringWriter);
return stringWriter.toString();
}catch(Exception e){
return super.toString();
}
}
}

24
src/main/java/org/gcube/informationsystem/base/impl/properties/BasePropertyImpl.java Normal file
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@ -0,0 +1,24 @@
package org.gcube.informationsystem.base.impl.properties;
import org.gcube.informationsystem.base.impl.ISManageableImpl;
import org.gcube.informationsystem.base.reference.properties.BaseProperty;
import org.gcube.informationsystem.model.reference.properties.Property;
import com.fasterxml.jackson.annotation.JsonTypeName;
/**
* @author Luca Frosini (ISTI - CNR)
*/
@JsonTypeName(value=BaseProperty.NAME)
public class BasePropertyImpl extends ISManageableImpl implements Property {
/**
* Generated Serial Version UID
*/
private static final long serialVersionUID = 1396998430221747445L;
public BasePropertyImpl() {
super();
}
}

4
src/main/java/org/gcube/informationsystem/model/impl/properties/HeaderImpl.java → src/main/java/org/gcube/informationsystem/base/impl/properties/HeaderImpl.java
View File

@ -1,7 +1,7 @@
/**
*
*/
package org.gcube.informationsystem.model.impl.properties;
package org.gcube.informationsystem.base.impl.properties;
import java.util.Date;
import java.util.UUID;
@ -14,7 +14,7 @@ import com.fasterxml.jackson.annotation.JsonTypeName;
* @author Luca Frosini (ISTI - CNR)
*/
@JsonTypeName(value=Header.NAME)
public class HeaderImpl extends PropertyImpl implements Header {
public final class HeaderImpl extends BasePropertyImpl implements Header {
/**
* Generated Serial Version UID

31
src/main/java/org/gcube/informationsystem/base/impl/relations/BaseRelationImpl.java
View File

@ -1,14 +1,15 @@
package org.gcube.informationsystem.base.impl.relations;
import org.gcube.informationsystem.base.impl.ERImpl;
import org.gcube.informationsystem.base.reference.entities.BaseEntity;
import org.gcube.informationsystem.base.reference.relations.BaseRelation;
public abstract class BaseRelationImpl<Out extends BaseEntity, In extends BaseEntity> extends RImpl<Out,In> implements BaseRelation<Out, In> {
public abstract class BaseRelationImpl<Out extends BaseEntity, In extends BaseEntity> extends ERImpl implements BaseRelation<Out, In> {
/**
* Generated Serial Version UID
*/
private static final long serialVersionUID = 5789078326714392972L;
private static final long serialVersionUID = 28704968813390512L;
protected Out source;
protected In target;
@ -18,7 +19,29 @@ public abstract class BaseRelationImpl<Out extends BaseEntity, In extends BaseEn
}
protected BaseRelationImpl(Out source, In target) {
super(source, target);
this();
this.source = source;
this.target = target;
}
@Override
public Out getSource() {
return source;
}
@Override
public void setSource(Out source) {
this.source = source;
}
@Override
public In getTarget() {
return target;
}
@Override
public void setTarget(In target) {
this.target = target;
}
}

65
src/main/java/org/gcube/informationsystem/base/impl/relations/RImpl.java
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@ -1,65 +0,0 @@
package org.gcube.informationsystem.base.impl.relations;
import java.io.StringWriter;
import org.gcube.informationsystem.base.impl.ERImpl;
import org.gcube.informationsystem.base.reference.entities.E;
import org.gcube.informationsystem.base.reference.relations.R;
import org.gcube.informationsystem.utils.ISMapper;
public abstract class RImpl<Out extends E, In extends E> extends ERImpl implements R<Out, In> {
/**
* Generated Serial Version UID
*/
private static final long serialVersionUID = 28704968813390512L;
protected Out source;
protected In target;
protected RImpl() {
super();
}
protected RImpl(Out source, In target) {
this();
this.source = source;
this.target = target;
}
@Override
public Out getSource() {
return source;
}
@Override
public void setSource(Out source) {
this.source = source;
}
@Override
public In getTarget() {
return target;
}
@Override
public void setTarget(In target) {
this.target = target;
}
@Override
public String toString() {
StringWriter stringWriter = new StringWriter();
try {
ISMapper.marshal(this, stringWriter);
return stringWriter.toString();
} catch (Exception e) {
try {
ISMapper.marshal(this.header, stringWriter);
return stringWriter.toString();
} catch (Exception e1) {
return super.toString();
}
}
}
}

2
src/main/java/org/gcube/informationsystem/base/reference/AccessType.java
View File

@ -5,7 +5,6 @@ package org.gcube.informationsystem.base.reference;
import java.util.Arrays;
import org.gcube.informationsystem.base.reference.properties.Property;
import org.gcube.informationsystem.context.impl.entities.ContextImpl;
import org.gcube.informationsystem.context.impl.relations.IsParentOfImpl;
import org.gcube.informationsystem.context.reference.entities.Context;
@ -25,6 +24,7 @@ import org.gcube.informationsystem.model.impl.relations.RelationImpl;
import org.gcube.informationsystem.model.reference.entities.Entity;
import org.gcube.informationsystem.model.reference.entities.Facet;
import org.gcube.informationsystem.model.reference.entities.Resource;
import org.gcube.informationsystem.model.reference.properties.Property;
import org.gcube.informationsystem.model.reference.relations.ConsistsOf;
import org.gcube.informationsystem.model.reference.relations.IsRelatedTo;
import org.gcube.informationsystem.model.reference.relations.Relation;

3
src/main/java/org/gcube/informationsystem/base/reference/entities/BaseEntity.java
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@ -1,5 +1,6 @@
package org.gcube.informationsystem.base.reference.entities;
import org.gcube.informationsystem.base.reference.ER;
import org.gcube.informationsystem.types.annotations.Abstract;
import com.fasterxml.jackson.annotation.JsonIgnoreProperties;
@ -7,7 +8,7 @@ import com.fasterxml.jackson.annotation.JsonIgnoreProperties;
@Abstract
@JsonIgnoreProperties(ignoreUnknown=true)
//@JsonDeserialize(as=BaseEntityImpl.class) Do not uncomment to manage subclasses
public interface BaseEntity extends E {
public interface BaseEntity extends ER {
public static final String NAME = "BaseEntity"; //Entity.class.getSimpleName();

15
src/main/java/org/gcube/informationsystem/base/reference/entities/E.java
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@ -1,15 +0,0 @@
package org.gcube.informationsystem.base.reference.entities;
import org.gcube.informationsystem.base.reference.ER;
import org.gcube.informationsystem.types.annotations.Abstract;
import com.fasterxml.jackson.annotation.JsonIgnoreProperties;
@Abstract
@JsonIgnoreProperties(ignoreUnknown=true)
//@JsonDeserialize(as=EImpl.class) Do not uncomment to manage subclasses
public interface E extends ER {
public static final String NAME = "E"; // Entity.class.getSimpleName();
}

20
src/main/java/org/gcube/informationsystem/base/reference/properties/BaseProperty.java Normal file
View File

@ -0,0 +1,20 @@
package org.gcube.informationsystem.base.reference.properties;
import org.gcube.informationsystem.base.reference.ISManageable;
import com.fasterxml.jackson.annotation.JsonIgnoreProperties;
/**
* @author Luca Frosini (ISTI - CNR)
* Root Class for Property types. It creates a base common type, which is useful
* for management purpose.
*/
// @JsonTypeInfo(use = JsonTypeInfo.Id.NAME, include = JsonTypeInfo.As.PROPERTY, property = ISManageable.CLASS_PROPERTY)
@JsonIgnoreProperties(ignoreUnknown=true)
public interface BaseProperty extends ISManageable {
public static final String NAME = "BaseProperty"; //BaseProperty.class.getSimpleName();
public static final String DESCRIPTION = "This is the very base class for Property";
public static final String VERSION = "1.0.0";
}

4
src/main/java/org/gcube/informationsystem/base/reference/properties/Header.java
View File

@ -6,8 +6,8 @@ package org.gcube.informationsystem.base.reference.properties;
import java.util.Date;
import java.util.UUID;
import org.gcube.informationsystem.base.impl.properties.HeaderImpl;
import org.gcube.informationsystem.base.reference.ISConstants;
import org.gcube.informationsystem.model.impl.properties.HeaderImpl;
import org.gcube.informationsystem.types.annotations.ISProperty;
import com.fasterxml.jackson.annotation.JsonFormat;
@ -18,7 +18,7 @@ import com.fasterxml.jackson.databind.annotation.JsonDeserialize;
* https://wiki.gcube-system.org/gcube/Facet_Based_Resource_Model#Header
*/
@JsonDeserialize(as=HeaderImpl.class)
public interface Header extends Property {
public interface Header extends BaseProperty {
public static final String NAME = "Header"; // Header.class.getSimpleName();

28
src/main/java/org/gcube/informationsystem/base/reference/relations/BaseRelation.java
View File

@ -1,12 +1,38 @@
package org.gcube.informationsystem.base.reference.relations;
import org.gcube.informationsystem.base.reference.ER;
import org.gcube.informationsystem.base.reference.entities.BaseEntity;
import org.gcube.informationsystem.base.reference.properties.Header;
import org.gcube.informationsystem.types.annotations.Abstract;
import org.gcube.informationsystem.types.annotations.ISProperty;
import com.fasterxml.jackson.annotation.JsonGetter;
import com.fasterxml.jackson.annotation.JsonIgnore;
@Abstract
//@JsonDeserialize(as=BaseRelationImpl.class) Do not uncomment to manage subclasses
public interface BaseRelation<Out extends BaseEntity, In extends BaseEntity> extends R<Out,In> {
public interface BaseRelation<Out extends BaseEntity, In extends BaseEntity> extends ER {
public static final String NAME = "BaseRelation"; // BaseRelation.class.getSimpleName();
public static final String SOURCE_PROPERTY = "source";
public static final String TARGET_PROPERTY = "target";
/* Overriding getHeader method to create Header property in type */
@ISProperty(name = HEADER_PROPERTY, mandatory = true, nullable = false)
@Override
public Header getHeader();
@JsonGetter(value=SOURCE_PROPERTY)
public Out getSource();
@JsonIgnore
public void setSource(Out source);
@JsonGetter(value=TARGET_PROPERTY)
public In getTarget();
@JsonIgnore
public void setTarget(In target);
}

38
src/main/java/org/gcube/informationsystem/base/reference/relations/R.java
View File

@ -1,38 +0,0 @@
package org.gcube.informationsystem.base.reference.relations;
import org.gcube.informationsystem.base.reference.ER;
import org.gcube.informationsystem.base.reference.entities.E;
import org.gcube.informationsystem.base.reference.properties.Header;
import org.gcube.informationsystem.types.annotations.Abstract;
import org.gcube.informationsystem.types.annotations.ISProperty;
import com.fasterxml.jackson.annotation.JsonGetter;
import com.fasterxml.jackson.annotation.JsonIgnore;
@Abstract
//@JsonDeserialize(as=RImpl.class) Do not uncomment to manage subclasses
public interface R<Out extends E, In extends E> extends ER {
public static final String NAME = "R"; // R.class.getSimpleName();
public static final String SOURCE_PROPERTY = "source";
public static final String TARGET_PROPERTY = "target";
/* Overriding getHeader method to create Header property in type */
@ISProperty(name = HEADER_PROPERTY, mandatory = true, nullable = false)
@Override
public Header getHeader();
@JsonGetter(value=SOURCE_PROPERTY)
public Out getSource();
@JsonIgnore
public void setSource(Out source);
@JsonGetter(value=TARGET_PROPERTY)
public In getTarget();
@JsonIgnore
public void setTarget(In target);
}

2
src/main/java/org/gcube/informationsystem/context/impl/entities/ContextImpl.java
View File

@ -8,10 +8,10 @@ import java.util.List;
import java.util.UUID;
import org.gcube.informationsystem.base.impl.entities.BaseEntityImpl;
import org.gcube.informationsystem.base.impl.properties.HeaderImpl;
import org.gcube.informationsystem.context.impl.relations.IsParentOfImpl;
import org.gcube.informationsystem.context.reference.entities.Context;
import org.gcube.informationsystem.context.reference.relations.IsParentOf;
import org.gcube.informationsystem.model.impl.properties.HeaderImpl;
import com.fasterxml.jackson.annotation.JsonSetter;
import com.fasterxml.jackson.annotation.JsonTypeName;

2
src/main/java/org/gcube/informationsystem/model/impl/entities/DummyFacet.java
View File

@ -5,7 +5,7 @@ package org.gcube.informationsystem.model.impl.entities;
import java.util.UUID;
import org.gcube.informationsystem.model.impl.properties.HeaderImpl;
import org.gcube.informationsystem.base.impl.properties.HeaderImpl;
import org.gcube.informationsystem.model.reference.entities.Facet;
/**

2
src/main/java/org/gcube/informationsystem/model/impl/entities/DummyResource.java
View File

@ -5,7 +5,7 @@ package org.gcube.informationsystem.model.impl.entities;
import java.util.UUID;
import org.gcube.informationsystem.model.impl.properties.HeaderImpl;
import org.gcube.informationsystem.base.impl.properties.HeaderImpl;
import org.gcube.informationsystem.model.reference.entities.Resource;
/**

19
src/main/java/org/gcube/informationsystem/model/impl/entities/EntityImpl.java
View File

@ -3,11 +3,8 @@
*/
package org.gcube.informationsystem.model.impl.entities;
import java.io.StringWriter;
import org.gcube.informationsystem.base.impl.entities.BaseEntityImpl;
import org.gcube.informationsystem.model.reference.entities.Entity;
import org.gcube.informationsystem.utils.ISMapper;
import com.fasterxml.jackson.annotation.JsonTypeName;
@ -27,20 +24,4 @@ public abstract class EntityImpl extends BaseEntityImpl implements Entity {
this.header = null;
}
@Override
public String toString(){
StringWriter stringWriter = new StringWriter();
try {
ISMapper.marshal(this, stringWriter);
return stringWriter.toString();
}catch(Exception e){
try {
ISMapper.marshal(this.header, stringWriter);
return stringWriter.toString();
} catch(Exception e1){
return super.toString();
}
}
}
}

2
src/main/java/org/gcube/informationsystem/model/impl/entities/FacetImpl.java
View File

@ -9,8 +9,8 @@ import java.util.Map;
import java.util.Set;
import org.gcube.informationsystem.base.reference.ISManageable;
import org.gcube.informationsystem.base.reference.properties.Property;
import org.gcube.informationsystem.model.reference.entities.Facet;
import org.gcube.informationsystem.model.reference.properties.Property;
import org.gcube.informationsystem.utils.ISMapper;
import com.fasterxml.jackson.annotation.JsonIgnore;

2
src/main/java/org/gcube/informationsystem/model/impl/properties/DummyProperty.java
View File

@ -3,7 +3,7 @@
*/
package org.gcube.informationsystem.model.impl.properties;
import org.gcube.informationsystem.base.reference.properties.Property;
import org.gcube.informationsystem.model.reference.properties.Property;
/**
* @author Luca Frosini (ISTI - CNR)

2
src/main/java/org/gcube/informationsystem/model/impl/properties/PropertyImpl.java
View File

@ -4,7 +4,7 @@
package org.gcube.informationsystem.model.impl.properties;
import org.gcube.informationsystem.base.impl.ISManageableImpl;
import org.gcube.informationsystem.base.reference.properties.Property;
import org.gcube.informationsystem.model.reference.properties.Property;
import com.fasterxml.jackson.annotation.JsonTypeName;

2
src/main/java/org/gcube/informationsystem/model/impl/relations/RelationImpl.java
View File

@ -10,9 +10,9 @@ import java.util.Set;
import org.gcube.informationsystem.base.impl.relations.BaseRelationImpl;
import org.gcube.informationsystem.base.reference.ISManageable;
import org.gcube.informationsystem.base.reference.properties.Property;
import org.gcube.informationsystem.model.reference.entities.Entity;
import org.gcube.informationsystem.model.reference.properties.PropagationConstraint;
import org.gcube.informationsystem.model.reference.properties.Property;
import org.gcube.informationsystem.model.reference.relations.Relation;
import org.gcube.informationsystem.utils.ISMapper;

1
src/main/java/org/gcube/informationsystem/model/reference/properties/Encrypted.java
View File

@ -1,6 +1,5 @@
package org.gcube.informationsystem.model.reference.properties;
import org.gcube.informationsystem.base.reference.properties.Property;
import org.gcube.informationsystem.model.impl.properties.EncryptedImpl;
import org.gcube.informationsystem.types.annotations.ISProperty;

1
src/main/java/org/gcube/informationsystem/model/reference/properties/PropagationConstraint.java
View File

@ -3,7 +3,6 @@
*/
package org.gcube.informationsystem.model.reference.properties;
import org.gcube.informationsystem.base.reference.properties.Property;
import org.gcube.informationsystem.model.impl.properties.PropagationConstraintImpl;
import org.gcube.informationsystem.types.annotations.ISProperty;

7
src/main/java/org/gcube/informationsystem/base/reference/properties/Property.java → src/main/java/org/gcube/informationsystem/model/reference/properties/Property.java
View File

@ -1,9 +1,9 @@
/**
*
*/
package org.gcube.informationsystem.base.reference.properties;
package org.gcube.informationsystem.model.reference.properties;
import org.gcube.informationsystem.base.reference.ISManageable;
import org.gcube.informationsystem.base.reference.properties.BaseProperty;
import com.fasterxml.jackson.annotation.JsonIgnoreProperties;
@ -12,10 +12,9 @@ import com.fasterxml.jackson.annotation.JsonIgnoreProperties;
* Root Class for Property types. It creates a base common type, which is useful
* for management purpose.
*/
// @JsonTypeInfo(use = JsonTypeInfo.Id.NAME, include = JsonTypeInfo.As.PROPERTY, property = ISManageable.CLASS_PROPERTY)
@JsonIgnoreProperties(ignoreUnknown=true)
public interface Property extends ISManageable {
public interface Property extends BaseProperty {
public static final String NAME = "Property"; //Property.class.getSimpleName();
public static final String DESCRIPTION = "This is the base class for Property";

64
src/main/java/org/gcube/informationsystem/types/Type.java
View File

@ -30,8 +30,7 @@ import java.util.Map;
import java.util.Set;
import java.util.UUID;
import org.gcube.informationsystem.base.reference.properties.Property;
import org.gcube.informationsystem.model.reference.properties.Property;
/**
* @author Lucio Lelii (ISTI - CNR)
@ -45,22 +44,22 @@ import org.gcube.informationsystem.base.reference.properties.Property;
* and adapted for gCube purpose.
*/
public class Type {
public enum OType {
BOOLEAN("Boolean", 0),
INTEGER("Integer", 1),
SHORT("Short", 2),
LONG("Long", 3),
FLOAT("Float", 4),
DOUBLE("Double", 5),
DATETIME("Datetime", 6),
STRING("String", 7),
BYNARY("Bynary", 8),
@ -70,35 +69,35 @@ public class Type {
PROPERTYLIST("Property List", 10),
PROPERTYSET("Property Set", 11),
PROPERTYMAP("Property Map", 12),
BYTE("Byte", 17),
BINARY("Binary", 8);
private String stringValue;
private int intValue;
OType(String stringValue, int intValue){
OType(String stringValue, int intValue) {
this.stringValue = stringValue;
this.intValue = intValue;
}
public String getStringValue() {
return stringValue;
}
public int getIntValue() {
return intValue;
}
}
protected static final Map<Class<?>, OType> TYPES_BY_CLASS = new HashMap<Class<?>, OType>();
static{
protected static final Map<Class<?>,OType> TYPES_BY_CLASS = new HashMap<Class<?>,OType>();
static {
// This is made by hand because not all types should be add.
TYPES_BY_CLASS.put(Boolean.TYPE, OType.BOOLEAN);
TYPES_BY_CLASS.put(Boolean.class, OType.BOOLEAN);
@ -140,14 +139,13 @@ public class Type {
TYPES_BY_CLASS.put(byte[].class, OType.BYNARY);
TYPES_BY_CLASS.put(Byte[].class, OType.BYNARY);
TYPES_BY_CLASS.put(Enum.class, OType.STRING);
TYPES_BY_CLASS.put(URI.class, OType.STRING);
TYPES_BY_CLASS.put(URL.class, OType.STRING);
TYPES_BY_CLASS.put(UUID.class, OType.STRING);
}
/**
* Return the correspondent type by checking the "assignability" of the
* class received as parameter.
@ -156,19 +154,17 @@ public class Type {
* @return OType instance if found, otherwise null
*/
public static OType getTypeByClass(final Class<?> iClass) {
if (iClass == null) {
if(iClass == null) {
return null;
}
OType type = TYPES_BY_CLASS.get(iClass);
if(type==null && Enum.class.isAssignableFrom(iClass)){
type = TYPES_BY_CLASS.get(Enum.class);
}
return type;
}
if(type == null && Enum.class.isAssignableFrom(iClass)) {
type = TYPES_BY_CLASS.get(Enum.class);
}
return type;
}
}

21
src/main/java/org/gcube/informationsystem/types/TypeBinder.java
View File

@ -5,7 +5,6 @@ import java.util.ArrayList;
import java.util.List;
import org.gcube.informationsystem.base.reference.ISManageable;
import org.gcube.informationsystem.types.impl.entities.TypeDefinitionImpl;
import org.gcube.informationsystem.types.reference.TypeDefinition;
import com.fasterxml.jackson.databind.JavaType;
@ -18,36 +17,38 @@ public class TypeBinder {
private final static String NAME = "NAME";
public static String serializeTypeDefinition(TypeDefinition typeDefinition) throws Exception{
public static <ISM extends ISManageable> String serializeTypeDefinition(TypeDefinition<ISM> typeDefinition) throws Exception{
ObjectMapper mapper = new ObjectMapper();
String json = mapper.writeValueAsString(typeDefinition);
return json;
}
public static String serializeType(Class<? extends ISManageable> type) throws Exception{
TypeDefinition typeDefinition = createTypeDefinition(type);
public static <ISM extends ISManageable> String serializeType(Class<ISM> type) throws Exception{
TypeDefinition<ISM> typeDefinition = createTypeDefinition(type);
return serializeTypeDefinition(typeDefinition);
}
public static TypeDefinition deserializeTypeDefinition(String json) throws Exception{
public static <ISM extends ISManageable> TypeDefinition<ISM> deserializeTypeDefinition(String json) throws Exception{
ObjectMapper mapper = new ObjectMapper();
return mapper.readValue(json, TypeDefinition.class);
@SuppressWarnings("unchecked")
TypeDefinition<ISM> readValue = mapper.readValue(json, TypeDefinition.class);
return readValue;
}
public static String serializeTypeDefinitions(List<TypeDefinition> typeDefinitions) throws Exception{
public static <ISM extends ISManageable> String serializeTypeDefinitions(List<TypeDefinition<ISM>> typeDefinitions) throws Exception{
ObjectMapper mapper = new ObjectMapper();
String json = mapper.writeValueAsString(typeDefinitions);
return json;
}
public static List<TypeDefinition> deserializeTypeDefinitions(String json) throws Exception{
public static <ISM extends ISManageable> List<TypeDefinition<ISM>> deserializeTypeDefinitions(String json) throws Exception{
ObjectMapper mapper = new ObjectMapper();
JavaType type = mapper.getTypeFactory().constructCollectionType(ArrayList.class, TypeDefinition.class) ;
return mapper.readValue(json, type);
}
public static TypeDefinition createTypeDefinition(Class<? extends ISManageable> clz) {
TypeDefinition typeDefinition = new TypeDefinitionImpl(clz);
public static <ISM extends ISManageable> TypeDefinition<ISM> createTypeDefinition(Class<ISM> clz) {
TypeDefinition<ISM> typeDefinition = TypeDefinitionImpl.getInstance(clz);
return typeDefinition;
}

108
src/main/java/org/gcube/informationsystem/types/impl/entities/TypeDefinitionImpl.java → src/main/java/org/gcube/informationsystem/types/TypeDefinitionImpl.java
View File

@ -1,22 +1,22 @@
package org.gcube.informationsystem.types.impl.entities;
package org.gcube.informationsystem.types;
import java.lang.reflect.Method;
import java.lang.reflect.TypeVariable;
import java.util.HashSet;
import java.util.Set;
import org.gcube.informationsystem.base.impl.ERImpl;
import org.gcube.informationsystem.base.reference.ISManageable;
import org.gcube.informationsystem.base.reference.properties.Property;
import org.gcube.informationsystem.model.reference.entities.Entity;
import org.gcube.informationsystem.model.reference.entities.Facet;
import org.gcube.informationsystem.base.reference.entities.BaseEntity;
import org.gcube.informationsystem.base.reference.properties.BaseProperty;
import org.gcube.informationsystem.base.reference.relations.BaseRelation;
import org.gcube.informationsystem.model.reference.entities.Resource;
import org.gcube.informationsystem.model.reference.relations.ConsistsOf;
import org.gcube.informationsystem.model.reference.relations.IsRelatedTo;
import org.gcube.informationsystem.model.reference.relations.Relation;
import org.gcube.informationsystem.types.TypeBinder;
import org.gcube.informationsystem.types.annotations.Abstract;
import org.gcube.informationsystem.types.annotations.ISProperty;
import org.gcube.informationsystem.types.impl.entities.EntityTypeDefinitionImpl;
import org.gcube.informationsystem.types.impl.properties.PropertyDefinitionImpl;
import org.gcube.informationsystem.types.impl.properties.PropertyTypeDefinitionImpl;
import org.gcube.informationsystem.types.impl.relations.RelationTypeDefinitionImpl;
import org.gcube.informationsystem.types.reference.TypeDefinition;
import org.gcube.informationsystem.types.reference.properties.PropertyDefinition;
import org.slf4j.Logger;
@ -24,18 +24,19 @@ import org.slf4j.LoggerFactory;
import com.fasterxml.jackson.annotation.JsonAutoDetect;
import com.fasterxml.jackson.annotation.JsonIgnoreProperties;
import com.fasterxml.jackson.annotation.JsonInclude;
import com.fasterxml.jackson.annotation.JsonProperty;
@JsonAutoDetect(fieldVisibility=JsonAutoDetect.Visibility.ANY)
@JsonIgnoreProperties(ignoreUnknown=true)
public class TypeDefinitionImpl implements TypeDefinition {
public abstract class TypeDefinitionImpl<ISM extends ISManageable> extends ERImpl implements TypeDefinition<ISM> {
/**
* Generated Serial Version UID
*/
private static final long serialVersionUID = 2698204820689338513L;
private static Logger logger = LoggerFactory.getLogger(TypeDefinitionImpl.class);
private static final String EDGE_CLASS_NAME = "E";
private static final String VERTEX_CLASS_NAME = "V";
private final static String DESCRIPTION = "DESCRIPTION";
protected String name;
@ -45,12 +46,7 @@ public class TypeDefinitionImpl implements TypeDefinition {
protected Set<String> superClasses;
protected Set<PropertyDefinition> properties;
@JsonInclude(JsonInclude.Include.NON_NULL)
protected String sourceType;
@JsonInclude(JsonInclude.Include.NON_NULL)
protected String targetType;
private static Set<String> retrieveSuperClasses(Class<? extends ISManageable> type, Class<? extends ISManageable> baseClass, String topSuperClass){
protected static <ISM extends ISManageable> Set<String> retrieveSuperClasses(Class<? extends ISM> type, Class<ISM> baseClass, String topSuperClass){
Set<String> interfaceList = new HashSet<>();
if(type==baseClass){
@ -92,14 +88,27 @@ public class TypeDefinitionImpl implements TypeDefinition {
return properties;
}
private static Class<?> getGenericClass(java.lang.reflect.Type type){
protected static Class<?> getGenericClass(java.lang.reflect.Type type){
TypeVariable<?> typeVariable = (TypeVariable<?>) type;
java.lang.reflect.Type[] bounds = typeVariable.getBounds();
java.lang.reflect.Type t = bounds[0];
return (Class<?>) t;
}
public TypeDefinitionImpl(Class<? extends ISManageable> clz) {
@SuppressWarnings({"rawtypes", "unchecked"})
public static <ISM extends ISManageable> TypeDefinition<ISM> getInstance(Class<ISM> clz) {
if(BaseEntity.class.isAssignableFrom(clz)) {
return new EntityTypeDefinitionImpl(clz);
} else if(BaseRelation.class.isAssignableFrom(clz)){
return new RelationTypeDefinitionImpl(clz);
} else if(BaseProperty.class.isAssignableFrom(clz)){
return new PropertyTypeDefinitionImpl(clz);
} else {
throw new RuntimeException("Serialization required");
}
}
protected TypeDefinitionImpl(Class<ISM> clz) {
this.name = TypeBinder.getType(clz);
this.description = TypeBinder.getStaticStringFieldByName(clz, DESCRIPTION, "");
this.abstractType = false;
@ -108,40 +117,6 @@ public class TypeDefinitionImpl implements TypeDefinition {
this.abstractType = true;
}
if(Entity.class.isAssignableFrom(clz)) {
if(Resource.class.isAssignableFrom(clz)){
this.superClasses = retrieveSuperClasses(clz, Resource.class, Entity.NAME);
}else{
if(Facet.class.isAssignableFrom(clz)){
this.superClasses = retrieveSuperClasses(clz, Facet.class, Entity.NAME);
} else {
this.superClasses = retrieveSuperClasses(clz, Entity.class, VERTEX_CLASS_NAME);
}
}
} else if(Relation.class.isAssignableFrom(clz)){
if(IsRelatedTo.class.isAssignableFrom(clz)){
this.superClasses = retrieveSuperClasses(clz, IsRelatedTo.class, Relation.NAME);
} else if(ConsistsOf.class.isAssignableFrom(clz)) {
this.superClasses = retrieveSuperClasses(clz, ConsistsOf.class, Relation.NAME);
} else {
this.superClasses = retrieveSuperClasses(clz, Relation.class, EDGE_CLASS_NAME);
}
java.lang.reflect.Type[] typeParameters = clz.getTypeParameters();
@SuppressWarnings("unchecked")
Class<? extends ISManageable> sourceClass = (Class<? extends ISManageable>) getGenericClass(typeParameters[0]);
@SuppressWarnings("unchecked")
Class<? extends ISManageable> targetClass = (Class<? extends ISManageable>) getGenericClass(typeParameters[1]);
this.sourceType = TypeBinder.getType(sourceClass);
this.targetType = TypeBinder.getType(targetClass);
} else if(Property.class.isAssignableFrom(clz)){
this.superClasses = retrieveSuperClasses(clz, Property.class, clz == Property.class ? null : Property.NAME);
} else {
throw new RuntimeException("Serialization required");
}
if(!Resource.class.isAssignableFrom(clz)){
this.properties = retrieveListOfProperties(clz);
}
@ -150,43 +125,28 @@ public class TypeDefinitionImpl implements TypeDefinition {
}
@Override
public String toString() {
return "TypeDefinition ["
+ "name=" + name
+ (sourceType==null ? "" : "(" + sourceType + "->" + targetType + ")")
+ ", description=" + description
+ ", abstract=" + abstractType
+ ", superClasses=" + superClasses
+ ", properties=" + properties
+ "]";
}
public String getName() {
return name;
}
@Override
public String getDescription() {
return description;
}
@Override
public boolean isAbstract() {
return abstractType;
}
@Override
public Set<String> getSuperClasses() {
return superClasses;
}
@Override
public Set<PropertyDefinition> getProperties() {
return properties;
}
public String getSourceType() {
return sourceType;
}
public String getTargetType() {
return targetType;
}
}

37
src/main/java/org/gcube/informationsystem/types/impl/entities/EntityTypeDefinitionImpl.java Normal file
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@ -0,0 +1,37 @@
package org.gcube.informationsystem.types.impl.entities;
import org.gcube.informationsystem.base.reference.entities.BaseEntity;
import org.gcube.informationsystem.model.reference.entities.Entity;
import org.gcube.informationsystem.model.reference.entities.Facet;
import org.gcube.informationsystem.model.reference.entities.Resource;
import org.gcube.informationsystem.types.TypeDefinitionImpl;
import org.gcube.informationsystem.types.reference.entities.EntityDefinition;
public class EntityTypeDefinitionImpl<E extends BaseEntity> extends TypeDefinitionImpl<E> implements EntityDefinition<E> {
/**
*
*/
private static final long serialVersionUID = 2614315845213942880L;
private static final String VERTEX_CLASS_NAME = "V";
public EntityTypeDefinitionImpl(Class<E> clz) {
super(clz);
if(Resource.class.isAssignableFrom(clz)){
@SuppressWarnings({"unchecked"})
Class<? extends Resource> c = (Class<? extends Resource>) clz;
this.superClasses = retrieveSuperClasses(c, Resource.class, Entity.NAME);
} else if(Facet.class.isAssignableFrom(clz)){
@SuppressWarnings({"unchecked"})
Class<? extends Facet> c = (Class<? extends Facet>) clz;
this.superClasses = retrieveSuperClasses(c, Facet.class, Entity.NAME);
} else {
this.superClasses = retrieveSuperClasses(clz, BaseEntity.class, VERTEX_CLASS_NAME);
}
}
}

13
src/main/java/org/gcube/informationsystem/types/impl/properties/PropertyDefinitionImpl.java
View File

@ -7,12 +7,12 @@ import java.net.URL;
import java.util.UUID;
import org.gcube.informationsystem.base.reference.ISManageable;
import org.gcube.informationsystem.base.reference.properties.Property;
import org.gcube.informationsystem.model.reference.properties.Property;
import org.gcube.informationsystem.types.Type;
import org.gcube.informationsystem.types.Type.OType;
import org.gcube.informationsystem.types.TypeBinder;
import org.gcube.informationsystem.types.TypeDefinitionImpl;
import org.gcube.informationsystem.types.annotations.ISProperty;
import org.gcube.informationsystem.types.impl.entities.TypeDefinitionImpl;
import org.gcube.informationsystem.types.reference.properties.PropertyDefinition;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
@ -23,7 +23,12 @@ import com.fasterxml.jackson.annotation.JsonIgnoreProperties;
@JsonAutoDetect(fieldVisibility=JsonAutoDetect.Visibility.ANY)
@JsonIgnoreProperties(ignoreUnknown=true)
public class PropertyDefinitionImpl implements PropertyDefinition {
public final class PropertyDefinitionImpl implements PropertyDefinition {
/**
* Generated Serial Version UID
*/
private static final long serialVersionUID = -5925314595659292025L;
private static Logger logger = LoggerFactory.getLogger(TypeDefinitionImpl.class);
@ -60,6 +65,8 @@ public class PropertyDefinitionImpl implements PropertyDefinition {
return name;
}
public PropertyDefinitionImpl(ISProperty propertyAnnotation, Method method) {
String name = propertyAnnotation.name().isEmpty()?getPropertyNameFromMethodName(method):propertyAnnotation.name();
this.name = name;

19
src/main/java/org/gcube/informationsystem/types/impl/properties/PropertyTypeDefinitionImpl.java Normal file
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@ -0,0 +1,19 @@
package org.gcube.informationsystem.types.impl.properties;
import org.gcube.informationsystem.base.reference.properties.BaseProperty;
import org.gcube.informationsystem.types.TypeDefinitionImpl;
import org.gcube.informationsystem.types.reference.properties.PropertyTypeDefiniton;
public class PropertyTypeDefinitionImpl<P extends BaseProperty> extends TypeDefinitionImpl<P> implements PropertyTypeDefiniton<P> {
/**
*
*/
private static final long serialVersionUID = 7532701373450638829L;
public PropertyTypeDefinitionImpl(Class<P> clz) {
super(clz);
this.superClasses = retrieveSuperClasses(clz, BaseProperty.class, clz == BaseProperty.class ? null : BaseProperty.NAME);
}
}

88
src/main/java/org/gcube/informationsystem/types/impl/relations/RelationTypeDefinitionImpl.java Normal file
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@ -0,0 +1,88 @@
package org.gcube.informationsystem.types.impl.relations;
import org.gcube.informationsystem.base.reference.entities.BaseEntity;
import org.gcube.informationsystem.base.reference.relations.BaseRelation;
import org.gcube.informationsystem.model.reference.relations.ConsistsOf;
import org.gcube.informationsystem.model.reference.relations.IsRelatedTo;
import org.gcube.informationsystem.model.reference.relations.Relation;
import org.gcube.informationsystem.types.TypeBinder;
import org.gcube.informationsystem.types.TypeDefinitionImpl;
import org.gcube.informationsystem.types.reference.entities.EntityDefinition;
import org.gcube.informationsystem.types.reference.relations.RelationDefinition;
import com.fasterxml.jackson.annotation.JsonInclude;
public class RelationTypeDefinitionImpl<Out extends BaseEntity, In extends BaseEntity, Rel extends BaseRelation<Out,In>>
extends TypeDefinitionImpl<Rel> implements RelationDefinition<Out,In,Rel> {
/**
*
*/
private static final long serialVersionUID = 2221831081869571296L;
private static final String EDGE_CLASS_NAME = "E";
@JsonInclude(JsonInclude.Include.NON_NULL)
protected String sourceType;
@JsonInclude(JsonInclude.Include.NON_NULL)
protected String targetType;
public RelationTypeDefinitionImpl(Class<Rel> clz) {
super(clz);
if(IsRelatedTo.class.isAssignableFrom(clz)){
@SuppressWarnings({"unchecked", "rawtypes"})
Class<? extends IsRelatedTo> c = (Class<? extends IsRelatedTo>) clz;
this.superClasses = retrieveSuperClasses(c, IsRelatedTo.class, Relation.NAME);
} else if(ConsistsOf.class.isAssignableFrom(clz)) {
@SuppressWarnings({"unchecked", "rawtypes"})
Class<? extends ConsistsOf> c = (Class<? extends ConsistsOf>) clz;
this.superClasses = retrieveSuperClasses(c, ConsistsOf.class, Relation.NAME);
} else {
this.superClasses = retrieveSuperClasses(clz, BaseRelation.class, EDGE_CLASS_NAME);
}
java.lang.reflect.Type[] typeParameters = clz.getTypeParameters();
@SuppressWarnings("unchecked")
Class<Out> sourceClass = (Class<Out>) getGenericClass(typeParameters[0]);
@SuppressWarnings("unchecked")
Class<In> targetClass = (Class<In>) getGenericClass(typeParameters[1]);
this.sourceType = TypeBinder.getType(sourceClass);
this.targetType = TypeBinder.getType(targetClass);
}
public String getSourceType() {
return sourceType;
}
public String getTargetType() {
return targetType;
}
@Override
public EntityDefinition<Out> getSource() {
// TODO Auto-generated method stub
return null;
}
@Override
public void setSource(EntityDefinition<Out> source) {
// TODO Auto-generated method stub
}
@Override
public EntityDefinition<In> getTarget() {
// TODO Auto-generated method stub
return null;
}
@Override
public void setTarget(EntityDefinition<In> target) {
// TODO Auto-generated method stub
}
}

8
src/main/java/org/gcube/informationsystem/types/reference/TypeDefinition.java
View File

@ -2,9 +2,11 @@ package org.gcube.informationsystem.types.reference;
import java.util.Set;
import org.gcube.informationsystem.base.reference.ER;
import org.gcube.informationsystem.base.reference.ISManageable;
import org.gcube.informationsystem.types.reference.properties.PropertyDefinition;
public interface TypeDefinition {
public interface TypeDefinition<ISM extends ISManageable> extends ER {
public String getName();
@ -15,9 +17,5 @@ public interface TypeDefinition {
public Set<String> getSuperClasses();
public Set<PropertyDefinition> getProperties();
public String getSourceType();
public String getTargetType();
}

8
src/main/java/org/gcube/informationsystem/types/reference/entities/EntityDefinition.java Normal file
View File

@ -0,0 +1,8 @@
package org.gcube.informationsystem.types.reference.entities;
import org.gcube.informationsystem.base.reference.entities.BaseEntity;
import org.gcube.informationsystem.types.reference.TypeDefinition;
public interface EntityDefinition<E extends BaseEntity> extends TypeDefinition<E>, BaseEntity {
}

14
src/main/java/org/gcube/informationsystem/types/reference/properties/PropertyDefinition.java
View File

@ -1,5 +1,17 @@
package org.gcube.informationsystem.types.reference.properties;
public interface PropertyDefinition {
import org.gcube.informationsystem.base.reference.properties.BaseProperty;
import org.gcube.informationsystem.types.impl.properties.PropertyDefinitionImpl;
import com.fasterxml.jackson.databind.annotation.JsonDeserialize;
/**
* @author Luca Frosini (ISTI - CNR)
* https://wiki.gcube-system.org/gcube/Facet_Based_Resource_Model#Header
*/
@JsonDeserialize(as = PropertyDefinitionImpl.class)
public interface PropertyDefinition extends BaseProperty {
public static final String NAME = "PropertyDefinition"; // PropertyDefinition.class.getSimpleName();
}

11
src/main/java/org/gcube/informationsystem/types/reference/properties/PropertyTypeDefiniton.java Normal file
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@ -0,0 +1,11 @@
package org.gcube.informationsystem.types.reference.properties;
import org.gcube.informationsystem.base.reference.properties.BaseProperty;
import org.gcube.informationsystem.types.reference.TypeDefinition;
public interface PropertyTypeDefiniton<P extends BaseProperty> extends TypeDefinition<P>, BaseProperty {
public static final String NAME = "PropertyTypeDefiniton"; // PropertyTypeDefiniton.class.getSimpleName();
}

15
src/main/java/org/gcube/informationsystem/types/reference/relations/RelationDefinition.java Normal file
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@ -0,0 +1,15 @@
package org.gcube.informationsystem.types.reference.relations;
import org.gcube.informationsystem.base.reference.entities.BaseEntity;
import org.gcube.informationsystem.base.reference.relations.BaseRelation;
import org.gcube.informationsystem.types.reference.TypeDefinition;
import org.gcube.informationsystem.types.reference.entities.EntityDefinition;
public interface RelationDefinition<Out extends BaseEntity, In extends BaseEntity, Rel extends BaseRelation<Out,In>>
extends TypeDefinition<Rel>, BaseRelation<EntityDefinition<Out>,EntityDefinition<In>> {
public String getSourceType();
public String getTargetType();
}

2
src/main/java/org/gcube/informationsystem/utils/AdditionalPropertiesSerializer.java
View File

@ -3,7 +3,7 @@ package org.gcube.informationsystem.utils;
import java.io.IOException;
import java.util.Map;
import org.gcube.informationsystem.base.reference.properties.Property;
import org.gcube.informationsystem.model.reference.properties.Property;
import com.fasterxml.jackson.core.JsonGenerator;
import com.fasterxml.jackson.databind.SerializerProvider;

2
src/main/java/org/gcube/informationsystem/utils/ObjectMappingERAction.java
View File

@ -3,8 +3,8 @@
*/
package org.gcube.informationsystem.utils;
import org.gcube.informationsystem.base.reference.properties.Property;
import org.gcube.informationsystem.model.reference.entities.Entity;
import org.gcube.informationsystem.model.reference.properties.Property;
import org.gcube.informationsystem.model.reference.relations.Relation;
import org.gcube.informationsystem.utils.discovery.SchemaAction;

2
src/main/java/org/gcube/informationsystem/utils/discovery/ISMDiscovery.java
View File

@ -10,8 +10,8 @@ import java.util.List;
import java.util.Objects;
import org.gcube.informationsystem.base.reference.ISManageable;
import org.gcube.informationsystem.base.reference.properties.Property;
import org.gcube.informationsystem.model.reference.entities.Entity;
import org.gcube.informationsystem.model.reference.properties.Property;
import org.gcube.informationsystem.model.reference.relations.Relation;
import org.gcube.informationsystem.types.annotations.ISProperty;
import org.slf4j.Logger;

2
src/main/java/org/gcube/informationsystem/utils/discovery/SchemaAction.java
View File

@ -3,8 +3,8 @@
*/
package org.gcube.informationsystem.utils.discovery;
import org.gcube.informationsystem.base.reference.properties.Property;
import org.gcube.informationsystem.model.reference.entities.Entity;
import org.gcube.informationsystem.model.reference.properties.Property;
import org.gcube.informationsystem.model.reference.relations.Relation;
/**

2
src/test/java/org/gcube/informationsystem/model/ContextTest.java → src/test/java/org/gcube/informationsystem/ContextTest.java
View File

@ -1,7 +1,7 @@
/**
*
*/
package org.gcube.informationsystem.model;
package org.gcube.informationsystem;
import java.io.IOException;
import java.io.InputStream;

4
src/test/java/org/gcube/informationsystem/model/impl/properties/HeaderTest.java → src/test/java/org/gcube/informationsystem/base/impl/properties/HeaderTest.java
View File

@ -1,11 +1,11 @@
package org.gcube.informationsystem.model.impl.properties;
package org.gcube.informationsystem.base.impl.properties;
import java.util.Calendar;
import java.util.Date;
import java.util.UUID;
import org.gcube.informationsystem.base.impl.properties.HeaderImpl;
import org.gcube.informationsystem.base.reference.properties.Header;
import org.gcube.informationsystem.model.impl.properties.HeaderImpl;
import org.gcube.informationsystem.utils.ISMapper;
import org.junit.Assert;
import org.junit.Test;

6
src/test/java/org/gcube/informationsystem/model/impl/properties/EncryptedTest.java → src/test/java/org/gcube/informationsystem/impl/properties/EncryptedTest.java
View File

@ -1,14 +1,14 @@
package org.gcube.informationsystem.model.impl.properties;
package org.gcube.informationsystem.impl.properties;
import java.security.Key;
import java.security.SecureRandom;
import javax.crypto.KeyGenerator;
import org.gcube.informationsystem.base.reference.properties.Property;
import org.gcube.informationsystem.model.ContextTest;
import org.gcube.informationsystem.ContextTest;
import org.gcube.informationsystem.model.impl.properties.EncryptedImpl;
import org.gcube.informationsystem.model.reference.properties.Encrypted;
import org.gcube.informationsystem.model.reference.properties.Property;
import org.gcube.informationsystem.types.TypeBinder;
import org.gcube.informationsystem.utils.ISMapper;
import org.junit.Assert;

4
src/test/java/org/gcube/informationsystem/types/EntitySchemaDefinition.java
View File

@ -4,8 +4,8 @@
package org.gcube.informationsystem.types;
import org.gcube.informationsystem.base.reference.ISManageable;
import org.gcube.informationsystem.base.reference.properties.BaseProperty;
import org.gcube.informationsystem.base.reference.properties.Header;
import org.gcube.informationsystem.base.reference.properties.Property;
import org.gcube.informationsystem.model.reference.entities.Resource;
import org.gcube.informationsystem.model.reference.relations.IsRelatedTo;
import org.junit.Test;
@ -23,7 +23,7 @@ public class EntitySchemaDefinition {
@Test
public void test() throws Exception {
Class<? extends Property> clz = Header.class;
Class<? extends BaseProperty> clz = Header.class;
String json = TypeBinder.serializeType(clz);
logger.trace(json);
}