Fixed doc generation

pom.xml

@@ -56,6 +56,13 @@
 			<groupId>org.slf4j</groupId>
 			<artifactId>slf4j-api</artifactId>
 		</dependency>
+		<!-- https://mvnrepository.com/artifact/org.nuiton.jrst/jrst -->
+		<dependency>
+		    <groupId>org.nuiton.jrst</groupId>
+		    <artifactId>jrst</artifactId>
+		    <version>2.4</version>
+		</dependency>
+		
 		<!-- Test Dependencies -->
 		<dependency>
 			<groupId>junit</groupId>

src/main/java/org/gcube/informationsystem/utils/documentation/generator/ClassesDiscoveryGenerator.java

@@ -1,7 +1,6 @@
 package org.gcube.informationsystem.utils.documentation.generator;
 
 import java.util.ArrayList;
-import java.util.Arrays;
 import java.util.List;
 import java.util.Objects;
 import java.util.ServiceLoader;
@@ -24,7 +23,7 @@ public class ClassesDiscoveryGenerator extends Generator {
 		
 	}
 	
-	protected List<Package> getPackages(){
+	public List<Package> getPackages(){
 		
 		List<Package> packages = new ArrayList<Package>();
 			
@@ -38,25 +37,32 @@ public class ClassesDiscoveryGenerator extends Generator {
 			Class<Element> clz = accessType.getTypeClass();
 			packages.add(clz.getPackage());
 		}
-			
+		
+		return packages;
+	}
+	
+	public List<Package> getExtensionsPackages(){
+		List<Package> packages = new ArrayList<Package>();
 		ServiceLoader<? extends RegistrationProvider> regsitrationProviders = ServiceLoader
 				.load(RegistrationProvider.class);
 		for(RegistrationProvider registrationProvider : regsitrationProviders) {
 			packages.addAll(registrationProvider.getPackagesToRegister());
 		}
-			
 		return packages;
 	}
 	
 	public void generate() throws Exception {
-		List<Package> pkgs = getPackages();
-		generate(pkgs.toArray(new Package[pkgs.size()]));
+		List<Package> packages = getPackages();
+		packages.addAll(getExtensionsPackages());
+		generate(packages);
 	}
 	
-	protected <E extends Element> void  discover(AccessType at, Package[] packages) throws Exception {
+	protected <E extends Element> void  discover(AccessType at, List<Package> packages) throws Exception {
 		ElementSpecilizationDiscovery<E> discovery = new ElementSpecilizationDiscovery<>(at.getTypeClass(), false);
 		if(Objects.nonNull(packages)) {
-			Arrays.stream(packages).forEach(p -> discovery.addPackage(p));
+			for(Package p : packages) {
+				discovery.addPackage(p);
+			}
 		}
 		discovery.discover();
 		
@@ -66,7 +72,7 @@ public class ClassesDiscoveryGenerator extends Generator {
 		}
 	}
 	
-	protected void generate(Package[] packages) throws Exception {
+	public void generate(List<Package> packages) throws Exception {
 		treeGenerator = new TreeGenerator();
 		AccessType[] types = new AccessType[] {
 				AccessType.PROPERTY, 

src/main/java/org/gcube/informationsystem/utils/documentation/model/DocumentationGenerator.java

@@ -30,6 +30,16 @@ public abstract class DocumentationGenerator {
 	public static final String NO_ADDITIONAL_ATTRIBUTE = "This type does not define any additional attributes.";
 	public static final String NO_SPECIFIC_KNOWN_USAGE = "No specific known usage for this type.";
 	
+	protected static int defaultOffsetLevel = 0;
+	
+	public static int getDefaultOffsetLevel() {
+		return defaultOffsetLevel;
+	}
+
+	public static void setDefaultOffsetLevel(int defaultOffsetLevel) {
+		DocumentationGenerator.defaultOffsetLevel = defaultOffsetLevel;
+	}
+
 	protected final Type type;
 	protected final AccessType requiredType;
 	protected String superClassToBeExcluded;
@@ -46,7 +56,7 @@ public abstract class DocumentationGenerator {
 		}
 		this.requiredNumberOfColumns = DEFAULT_NUMBER_OF_COLUMNS;
 		this.superClassToBeExcluded = null;
-		this.offsetLevel = 0;
+		this.offsetLevel = DocumentationGenerator.defaultOffsetLevel;
 	}
 	
 	public void setLevel(int level) {
@@ -338,7 +348,7 @@ public abstract class DocumentationGenerator {
 		Section section = new Section();
 		int sectionLevel = level+offsetLevel;
 		SectionType[] sectionTypes =  SectionType.values();
-		int maxSectionLevel = sectionTypes.length;
+		int maxSectionLevel = sectionTypes.length-1;
 		sectionLevel = sectionLevel>=maxSectionLevel ? maxSectionLevel : sectionLevel;  
 		SectionType sectionType = SectionType.values()[sectionLevel];
 		section.setSectionType(sectionType);

src/test/java/org/gcube/informationsystem/utils/documentation/GenerateTest.java

@@ -1,6 +1,7 @@
 package org.gcube.informationsystem.utils.documentation;
 
 import org.gcube.informationsystem.utils.documentation.generator.ClassesDiscoveryGenerator;
+import org.gcube.informationsystem.utils.documentation.model.DocumentationGenerator;
 import org.junit.Test;
 
 /**
@@ -10,7 +11,9 @@ public class GenerateTest {
 
 	@Test
 	public void testDocGeneration() throws Exception {
+		DocumentationGenerator.setDefaultOffsetLevel(2);
 		ClassesDiscoveryGenerator documentationGenerator = new ClassesDiscoveryGenerator();
 		documentationGenerator.generate();
 	}
+	
 }