From aedb52a34dae0879573b76f6db7facbe4ab90a21 Mon Sep 17 00:00:00 2001 From: lucio Date: Fri, 10 Jun 2022 17:09:42 +0200 Subject: [PATCH] porting to smartgears 4 --- .classpath | 13 +- .gitignore | 1 + .settings/org.eclipse.core.resources.prefs | 4 + .settings/org.eclipse.jdt.core.prefs | 8 + CHANGELOG.md | 8 + LICENSE.md | 312 ++++++++++++++++++ README.md | 72 ++++ pom.xml | 102 ++---- .../resources/discovery/icclient/Helper.java | 11 +- .../discovery/icclient/ICClient.java | 9 +- src/test/java/org/acme/APIClient.java | 237 ------------- 11 files changed, 451 insertions(+), 326 deletions(-) create mode 100644 .gitignore create mode 100644 .settings/org.eclipse.core.resources.prefs create mode 100644 .settings/org.eclipse.jdt.core.prefs create mode 100644 CHANGELOG.md create mode 100644 LICENSE.md create mode 100644 README.md delete mode 100644 src/test/java/org/acme/APIClient.java diff --git a/.classpath b/.classpath index 953de0b..b8c44f6 100644 --- a/.classpath +++ b/.classpath @@ -6,20 +6,11 @@ - - - - - - - - - - + @@ -27,7 +18,7 @@ - + diff --git a/.gitignore b/.gitignore new file mode 100644 index 0000000..b83d222 --- /dev/null +++ b/.gitignore @@ -0,0 +1 @@ +/target/ diff --git a/.settings/org.eclipse.core.resources.prefs b/.settings/org.eclipse.core.resources.prefs new file mode 100644 index 0000000..f9fe345 --- /dev/null +++ b/.settings/org.eclipse.core.resources.prefs @@ -0,0 +1,4 @@ +eclipse.preferences.version=1 +encoding//src/main/java=UTF-8 +encoding//src/test/java=UTF-8 +encoding/=UTF-8 diff --git a/.settings/org.eclipse.jdt.core.prefs b/.settings/org.eclipse.jdt.core.prefs new file mode 100644 index 0000000..2f5cc74 --- /dev/null +++ b/.settings/org.eclipse.jdt.core.prefs @@ -0,0 +1,8 @@ +eclipse.preferences.version=1 +org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.8 +org.eclipse.jdt.core.compiler.compliance=1.8 +org.eclipse.jdt.core.compiler.problem.enablePreviewFeatures=disabled +org.eclipse.jdt.core.compiler.problem.forbiddenReference=warning +org.eclipse.jdt.core.compiler.problem.reportPreviewFeatures=ignore +org.eclipse.jdt.core.compiler.release=disabled +org.eclipse.jdt.core.compiler.source=1.8 diff --git a/CHANGELOG.md b/CHANGELOG.md new file mode 100644 index 0000000..6cc6557 --- /dev/null +++ b/CHANGELOG.md @@ -0,0 +1,8 @@ +This project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). + +# Changelog for Gcube security + +## [v2.0.0-SNAPSHOT] - 2022-05-23 + +- Porting to Secret Manager + diff --git a/LICENSE.md b/LICENSE.md new file mode 100644 index 0000000..3af0507 --- /dev/null +++ b/LICENSE.md @@ -0,0 +1,312 @@ +# European Union Public Licence V. 1.1 + + +EUPL © the European Community 2007 + + +This European Union Public Licence (the “EUPL”) applies to the Work or Software +(as defined below) which is provided under the terms of this Licence. 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Jurisdiction + +Any litigation resulting from the interpretation of this License, arising +between the European Commission, as a Licensor, and any Licensee, will be +subject to the jurisdiction of the Court of Justice of the European Communities, +as laid down in article 238 of the Treaty establishing the European Community. + +Any litigation arising between Parties, other than the European Commission, and +resulting from the interpretation of this License, will be subject to the +exclusive jurisdiction of the competent court where the Licensor resides or +conducts its primary business. + + + +## 15. Applicable Law + +This Licence shall be governed by the law of the European Union country where +the Licensor resides or has his registered office. + +This licence shall be governed by the Belgian law if: + +- a litigation arises between the European Commission, as a Licensor, and any +- Licensee; the Licensor, other than the European Commission, has no residence +- or registered office inside a European Union country. + + + +## Appendix + + + +“Compatible Licences” according to article 5 EUPL are: + + +- GNU General Public License (GNU GPL) v. 2 + +- Open Software License (OSL) v. 2.1, v. 3.0 + +- Common Public License v. 1.0 + +- Eclipse Public License v. 1.0 + +- Cecill v. 2.0 + diff --git a/README.md b/README.md new file mode 100644 index 0000000..9d52e44 --- /dev/null +++ b/README.md @@ -0,0 +1,72 @@ +# IC CLient + +A core gCube library which empower resource discovery + +## Built With + +* [OpenJDK](https://openjdk.java.net/) - The JDK used +* [Maven](https://maven.apache.org/) - Dependency Management + +## Documentation + + +## Change log + +See [Releases](https://code-repo.d4science.org/gCubeSystem/ic-client/releases). + +## Authors + +* **Luca Frosini** ([ORCID](https://orcid.org/0000-0003-3183-2291)) - [ISTI-CNR Infrascience Group](http://nemis.isti.cnr.it/groups/infrascience) +* **Lucio Lelii** - [ISTI-CNR Infrascience Group](http://nemis.isti.cnr.it/groups/infrascience) + + +## How to Cite this Software + +Tell people how to cite this software. +* Cite an associated paper? +* Use a specific BibTeX entry for the software? + + + @Manual{, + title = {Common Smartgears}, + author = {{Frosini, Luca}, {Lelii, Lucio}}, + organization = {{ISTI - CNR}, {FAO}}, + address = {{Pisa, Italy}, {Roma, Italy}}, + year = 2022, + url = {http://www.gcube-system.org/} + } + +## License + +This project is licensed under the EUPL V.1.1 License - see the [LICENSE.md](LICENSE.md) file for details. + + +## About the gCube Framework +This software is part of the [gCubeFramework](https://www.gcube-system.org/ "gCubeFramework"): an +open-source software toolkit used for building and operating Hybrid Data +Infrastructures enabling the dynamic deployment of Virtual Research Environments +by favouring the realisation of reuse oriented policies. + +The projects leading to this software have received funding from a series of European Union programmes including: + +- the Sixth Framework Programme for Research and Technological Development + - DILIGENT (grant no. 004260). +- the Seventh Framework Programme for research, technological development and demonstration + - D4Science (grant no. 212488); + - D4Science-II (grant no.239019); + - ENVRI (grant no. 283465); + - iMarine(grant no. 283644); + - EUBrazilOpenBio (grant no. 288754). +- the H2020 research and innovation programme + - SoBigData (grant no. 654024); + - PARTHENOS (grant no. 654119); + - EGIEngage (grant no. 654142); + - ENVRIplus (grant no. 654182); + - BlueBRIDGE (grant no. 675680); + - PerformFish (grant no. 727610); + - AGINFRAplus (grant no. 731001); + - DESIRA (grant no. 818194); + - ARIADNEplus (grant no. 823914); + - RISIS2 (grant no. 824091); + + diff --git a/pom.xml b/pom.xml index ef500f5..ecd79e5 100644 --- a/pom.xml +++ b/pom.xml @@ -1,4 +1,5 @@ - 4.0.0 @@ -9,51 +10,66 @@ org.gcube.resources.discovery ic-client - 1.0.4 + 2.0.0-SNAPSHOT Information Collector Client Client API for the Information Collector service - - scm:git:https://code-repo.d4science.org/gCubeSystem/${project.artifactId}.git - scm:git:https://code-repo.d4science.org/gCubeSystem/${project.artifactId}.git - https://code-repo.d4science.org/gCubeSystem/${project.artifactId} - + + scm:git:https://code-repo.d4science.org/gCubeSystem/${project.artifactId}.git + scm:git:https://code-repo.d4science.org/gCubeSystem/${project.artifactId}.git + https://code-repo.d4science.org/gCubeSystem/${project.artifactId} + distro + + + + org.gcube.distribution + gcube-bom + 3.0.0-SNAPSHOT + pom + import + + + - - org.gcube.core - common-scope - [1.0.0-SNAPSHOT,2.0.0-SNAPSHOT) - - org.gcube.resources.discovery discovery-client - [1.0.0-SNAPSHOT,2.0.0-SNAPSHOT) org.gcube.resources common-gcore-resources - [1.0.0-SNAPSHOT,2.0.0-SNAPSHOT) org.gcube.core common-gcore-stubs - [1.0.0-SNAPSHOT,2.0.0-SNAPSHOT) + + + org.gcube.core + common-scope + + + org.gcube.common + common-security org.slf4j slf4j-api - 1.6.4 + + + + org.gcube.core + common-scope-maps + compile @@ -72,56 +88,4 @@ - - - - - org.apache.maven.plugins - maven-resources-plugin - 2.5 - - - copy-profile - install - - copy-resources - - - target - - - ${distroDirectory} - true - - profile.xml - - - - - - - - - - org.apache.maven.plugins - maven-assembly-plugin - - - ${distroDirectory}/descriptor.xml - - - - - servicearchive - install - - single - - - - - - - - \ No newline at end of file diff --git a/src/main/java/org/gcube/resources/discovery/icclient/Helper.java b/src/main/java/org/gcube/resources/discovery/icclient/Helper.java index e575849..2ba9474 100644 --- a/src/main/java/org/gcube/resources/discovery/icclient/Helper.java +++ b/src/main/java/org/gcube/resources/discovery/icclient/Helper.java @@ -1,7 +1,5 @@ package org.gcube.resources.discovery.icclient; -import static org.gcube.common.scope.impl.ScopeBean.Type.*; - import java.util.ArrayList; import java.util.HashMap; import java.util.List; @@ -9,8 +7,9 @@ import java.util.Map.Entry; import java.util.regex.Matcher; import java.util.regex.Pattern; -import org.gcube.common.scope.api.ScopeProvider; -import org.gcube.common.scope.impl.ScopeBean; +import org.gcube.common.security.ContextBean; +import org.gcube.common.security.ContextBean.Type; +import org.gcube.common.security.providers.SecretManagerProvider; import org.gcube.resources.discovery.icclient.stubs.MalformedQueryException; import org.slf4j.Logger; import org.slf4j.LoggerFactory; @@ -24,9 +23,9 @@ public class Helper { public static String queryAddAuthenticationControl(String expression) throws MalformedQueryException { - String scope = ScopeProvider.instance.get(); + String scope = SecretManagerProvider.instance.get().getContext(); - if (scope==null || !new ScopeBean(scope).is(VRE)) + if (scope==null || !new ContextBean(scope).is(Type.VRE)) return expression; int wherePathIndex=0; diff --git a/src/main/java/org/gcube/resources/discovery/icclient/ICClient.java b/src/main/java/org/gcube/resources/discovery/icclient/ICClient.java index 57680fd..d153b3e 100644 --- a/src/main/java/org/gcube/resources/discovery/icclient/ICClient.java +++ b/src/main/java/org/gcube/resources/discovery/icclient/ICClient.java @@ -1,11 +1,13 @@ package org.gcube.resources.discovery.icclient; -import static org.gcube.common.clients.stubs.jaxws.StubFactory.*; -import static org.gcube.resources.discovery.icclient.stubs.CollectorConstants.*; +import static org.gcube.common.clients.stubs.jaxws.StubFactory.stubFor; +import static org.gcube.resources.discovery.icclient.stubs.CollectorConstants.collector; +import static org.gcube.resources.discovery.icclient.stubs.CollectorConstants.localname; import java.net.URI; import java.util.ArrayList; import java.util.List; +import java.util.Objects; import java.util.regex.Matcher; import java.util.regex.Pattern; @@ -13,6 +15,7 @@ import javax.xml.ws.soap.SOAPFaultException; import org.gcube.common.clients.stubs.jaxws.JAXWSUtils; import org.gcube.common.scope.api.ServiceMap; +import org.gcube.common.security.providers.SecretManagerProvider; import org.gcube.resources.discovery.client.api.DiscoveryClient; import org.gcube.resources.discovery.client.api.DiscoveryException; import org.gcube.resources.discovery.client.queries.api.Query; @@ -34,7 +37,7 @@ public class ICClient implements DiscoveryClient { public List submit(Query query) throws DiscoveryException { - + Objects.requireNonNull(SecretManagerProvider.instance.get()); try { CollectorStub stub = getStub(); String results = callService(query, stub); diff --git a/src/test/java/org/acme/APIClient.java b/src/test/java/org/acme/APIClient.java deleted file mode 100644 index 957e159..0000000 --- a/src/test/java/org/acme/APIClient.java +++ /dev/null @@ -1,237 +0,0 @@ -package org.acme; - -import static java.lang.String.*; -import static org.gcube.resources.discovery.icclient.ICFactory.*; - -import java.net.URI; -import java.util.List; - -import javax.xml.bind.annotation.XmlElement; -import javax.xml.bind.annotation.XmlElementRef; -import javax.xml.bind.annotation.XmlRootElement; - -import org.gcube.common.resources.gcore.GCoreEndpoint; -import org.gcube.common.resources.gcore.GenericResource; -import org.gcube.common.resources.gcore.ServiceEndpoint; -import org.gcube.common.resources.gcore.ServiceEndpoint.AccessPoint; -import org.gcube.common.resources.gcore.ServiceInstance; -import org.gcube.common.scope.api.ScopeProvider; -import org.gcube.resources.discovery.client.api.DiscoveryClient; -import org.gcube.resources.discovery.client.queries.api.Query; -import org.gcube.resources.discovery.client.queries.api.SimpleQuery; -import org.gcube.resources.discovery.client.queries.impl.XQuery; -import org.gcube.resources.discovery.icclient.ICFactory; -import org.junit.BeforeClass; -import org.junit.Test; - -public class APIClient { - - @BeforeClass - public static void setup() { - - ScopeProvider.instance.set("/gcube/devNext"); - } - - - @Test - public void allServiceEndpoints() { - - - //pick a predefined query - Query query = queryFor(ServiceEndpoint.class); - - //pick a client that knows how to parse those resources - DiscoveryClient client = clientFor(ServiceEndpoint.class); - - //execute query in current scope - List resources = client.submit(query); - - System.out.println(resources); - - } - - @Test - public void testThredds() throws Exception{ - ScopeProvider.instance.set("/gcube/devNext/NextNext"); - SimpleQuery query = queryFor(GCoreEndpoint.class); - query.addCondition("$resource/Profile/ServiceClass/string() eq 'DataAccess' "); - query.setResult("$resource/Profile/ServiceName/text()"); - DiscoveryClient client = client(); - List resources = client.submit(query); - if (resources==null || resources.size()==0){ - throw new Exception("No resource named StatisticalManagerAlgorithm available in scope "); - } - - System.out.println("found resources "+resources.size()); - - } - - @Test - public void someServiceEndpoints() { - - - XQuery query = queryFor(ServiceEndpoint.class); - query.addCondition("$resource/Profile/Category/text() eq 'Database'"); - query.setResult("$resource/Profile/AccessPoint/Interface/Endpoint/text()"); - - DiscoveryClient client = client(); - - List resources = client.submit(query); - - System.out.println(resources); - - } - - @Test - public void someServiceEndpointAddresses() { - - - XQuery query = queryFor(ServiceEndpoint.class); - query.addCondition("$resource/Profile/Category/text() eq 'Database'"); - query.setResult("$resource/Profile/AccessPoint/Interface/Endpoint/text()"); - - DiscoveryClient client = client(); - - List addresses = client.submit(query); - - System.out.println(addresses); - - } - - @Test - public void someGCoreServiceEndpointAddresses() { - - - XQuery query = queryFor(GCoreEndpoint.class); - query.addCondition("$resource/Profile/ServiceClass/text() eq 'DataAccess'"); - query.addCondition("$resource/Profile/ServiceName/text() eq 'tree-manager-service'"); - query.addVariable("$entry","$resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint"); - query.addCondition("$entry/@EntryName/string() eq 'gcube/data/tm/binder'"); - query.setResult("$entry/text()"); - - DiscoveryClient client = client(); - - List addresses = client.submit(query); - - System.out.println(addresses); - - } - - @Test - public void someCustomServiceEndpointResults() { - - - XQuery query = queryFor(ServiceEndpoint.class); - query.addCondition("$resource/Profile/Category/text() eq 'Database'"); - query.setResult("" + - "{$resource/ID/text()}" + - "{$resource/Profile/AccessPoint}" + - ""); - - DiscoveryClient client = clientFor(PerfectResult.class); - - List results = client.submit(query); - - for (PerfectResult result : results) { - System.out.println(result.id+":"+result.ap); - } - - } - - @XmlRootElement(name="perfect") - private static class PerfectResult { - - @XmlElement(name="id") - String id; - - @XmlElementRef - AccessPoint ap; - } - - - @Test - public void someServiceEndpointsAccessData() { - - - XQuery query = queryFor(ServiceEndpoint.class); - query.addCondition("$resource/Profile/Category/text() eq 'Database'") - .setResult("$resource/Profile/AccessPoint"); - - DiscoveryClient client = clientFor(AccessPoint.class); - - List accesspoints = client.submit(query); - - for (AccessPoint point : accesspoints) { - System.out.println(point.name()+":"+point.address()); - } - - } - - @Test - public void someServiceInstances() { - - - - XQuery query = queryFor(ServiceInstance.class); - query.addCondition("$resource/Data/gcube:ServiceClass/text() eq 'DataAccess'"). - addCondition("$resource/Data/gcube:ServiceName/text() eq 'tree-manager-service'"); - - DiscoveryClient client = clientFor(ServiceInstance.class); - - List props = client.submit(query); - - System.out.println(props); - } - - @Test - public void someServiceInstanceReferences() { - - - XQuery query = queryFor(ServiceInstance.class); - query.addCondition("$resource/Data/gcube:ServiceClass/text() eq 'DataAccess'"). - addCondition("$resource/Data/gcube:ServiceName/text() eq 'tree-manager-service'") - .addCondition(format("$resource/Source/text()[ends-with(.,'%1s')]","gcube/data/tm/binder")); - - DiscoveryClient client = clientFor(ServiceInstance.class); - - List refs = client.submit(query); - - System.out.println(refs); - - } - - @Test - public void someServiceInstanceProperties() { - - - XQuery query = queryFor(ServiceInstance.class); - query.addNamespace("tm",URI.create("http://gcube-system.org/namespaces/data/tm")). - addCondition("$resource/Data/tm:Plugin/name/text() eq 'species-tree-plugin'"); - - DiscoveryClient client = clientFor(ServiceInstance.class); - - List props = client.submit(query); - - System.out.println(props); - - } - - @Test - public void someServiceEndpointsProperties() { - - - XQuery query = queryFor(ServiceEndpoint.class); - query.addVariable("$prop", "$resource/Profile/AccessPoint/Properties/Property"). - addCondition("$prop/Name/text() eq 'dbname'"). - addCondition("$prop/Value/text() eq 'timeseries'"). - setResult("$resource/Profile/AccessPoint/Interface/Endpoint/text()"); - - DiscoveryClient client = client(); - - List props = client.submit(query); - - System.out.println(props); - - } - -}