minor fixes

git-svn-id: https://svn.d4science.research-infrastructures.eu/gcube/trunk/data-catalogue/grsf-publisher-ws@150982 82a268e6-3cf1-43bd-a215-b396298e98cf

src/main/java/org/gcube/data_catalogue/grsf_publish_ws/json/input/Base.java

@@ -37,7 +37,7 @@ public class Base {
 	// filled automatically by the service
 	@JsonProperty("author")
 	private String author;
-	
+
 	// filled automatically by the service
 	@JsonProperty("author_contact")
 	private String authorContact;
@@ -175,7 +175,7 @@ public class Base {
 	public void setUuid(String uuid) {
 		this.uuid = uuid;
 	}
-	
+
 	/**
 	 * Use for generics object (unrecognized from Jackson) to be put into the map
 	 * @param key

src/main/java/org/gcube/data_catalogue/grsf_publish_ws/json/input/Common.java

@@ -95,12 +95,6 @@ public class Common extends Base{
 	@CustomField(key="Species")
 	private List<String> species;
 
-	@JsonProperty("fao_state")
-	@CustomField(key="Fao State")
-	@TimeSeries
-	@Valid
-	private List<TimeSeriesBean<String, Void>> faoState;
-
 	public Common() {
 		super();
 	}
@@ -145,7 +139,6 @@ public class Common extends Base{
 		this.catches = catches;
 		this.landings = landings;
 		this.species = species;
-		this.faoState = faoState;
 	}
 
 	public String getGrsfType() {
@@ -159,7 +152,7 @@ public class Common extends Base{
 
 
 	public String getSourceType() {
-		return sourceType;
+		return sourceType;	
 	}
 
 
@@ -268,14 +261,6 @@ public class Common extends Base{
 		this.referenceYear = referenceYear;
 	}
 
-	public List<TimeSeriesBean<String, Void>> getFaoState() {
-		return faoState;
-	}
-
-	public void setFaoState(List<TimeSeriesBean<String, Void>> faoState) {
-		this.faoState = faoState;
-	}
-
 	@Override
 	public String toString() {
 		return "Common [dataOwner=" + dataOwner + ", databaseSources="
@@ -286,7 +271,7 @@ public class Common extends Base{
 				+ reportingYear + ", referenceYear=" + referenceYear
 				+ ", grsfType=" + grsfType + ", sourceType=" + sourceType
 				+ ", catches=" + catches + ", landings=" + landings
-				+ ", species=" + species + ", faoState=" + faoState + "]";
+				+ ", species=" + species + "]";
 	}
 
 }

src/main/java/org/gcube/data_catalogue/grsf_publish_ws/json/input/FisheryRecord.java

@@ -31,14 +31,9 @@ public class FisheryRecord extends Common{
 	@CustomField(key="Fishery id")
 	private String fisheryId;
 
-	@JsonProperty("species")
-	@Tag
-	@CustomField(key="Species")
-	private List<String> species;
-
 	@JsonProperty("fishing_area")
 	@CustomField(key="Fishing area")
-	@Tag
+	//@Tag
 	private List<String> fishingArea;
 
 	@JsonProperty("exploited_stocks")
@@ -47,7 +42,7 @@ public class FisheryRecord extends Common{
 
 	@JsonProperty("management_entity")
 	@CustomField(key="Management entity")
-	@Tag
+	//@Tag
 	private List<String> managementEntity;
 
 	@JsonProperty("jurisdiction_area")
@@ -67,14 +62,14 @@ public class FisheryRecord extends Common{
 	private List<String> flagState;
 
 	@JsonProperty("fishing_gear")
-	@Tag
+	//@Tag
 	@CustomField(key="Fishing gear")
 	private List<String> fishingGear;
 
 	@JsonProperty("environment")
 	@CustomField(key="Environment")
 	private String environment;
-	
+
 	@JsonProperty("fishery_uri")
 	@CustomField(key="Fishery Uri")
 	private String fisheryUri;
@@ -92,7 +87,6 @@ public class FisheryRecord extends Common{
 	/**
 	 * @param fisheryName
 	 * @param fisheryId
-	 * @param species
 	 * @param fishingArea
 	 * @param exploitingStocks
 	 * @param managementEntity
@@ -105,16 +99,14 @@ public class FisheryRecord extends Common{
 	 * @param type
 	 */
 	public FisheryRecord(String fisheryName, String fisheryId,
-			List<String> species, List<String> fishingArea,
-			List<String> exploitingStocks, List<String> managementEntity,
-			List<String> jurisdictionArea,
+			List<String> fishingArea, List<String> exploitingStocks,
+			List<String> managementEntity, List<String> jurisdictionArea,
 			List<Production_System_Type> productionSystemType,
 			List<String> flagState, List<String> fishingGear,
 			String environment, String fisheryUri, Fishery_Type type) {
 		super();
 		this.fisheryName = fisheryName;
 		this.fisheryId = fisheryId;
-		this.species = species;
 		this.fishingArea = fishingArea;
 		this.exploitingStocks = exploitingStocks;
 		this.managementEntity = managementEntity;
@@ -183,14 +175,6 @@ public class FisheryRecord extends Common{
 		this.type = type;
 	}
 
-	public List<String> getSpecies() {
-		return species;
-	}
-
-	public void setSpecies(List<String> species) {
-		this.species = species;
-	}
-
 	public List<String> getExploitingStocks() {
 		return exploitingStocks;
 	}
@@ -235,8 +219,8 @@ public class FisheryRecord extends Common{
 	@Override
 	public String toString() {
 		return "FisheryRecord [fisheryName=" + fisheryName + ", fisheryId="
-				+ fisheryId + ", species=" + species + ", fishingArea="
-				+ fishingArea + ", exploitingStocks=" + exploitingStocks
+				+ fisheryId + ", fishingArea=" + fishingArea
+				+ ", exploitingStocks=" + exploitingStocks
 				+ ", managementEntity=" + managementEntity
 				+ ", jurisdictionArea=" + jurisdictionArea
 				+ ", productionSystemType=" + productionSystemType

src/main/java/org/gcube/data_catalogue/grsf_publish_ws/json/input/StockRecord.java

@@ -120,6 +120,12 @@ public class StockRecord extends Common{
 	@Group
 	private Stock_Type type;
 
+	@JsonProperty("fao_state")
+	@CustomField(key="Fao State")
+	@TimeSeries
+	@Valid
+	private List<TimeSeriesBean<String, Void>> faoState;
+
 	public StockRecord() {
 		super();
 	}
@@ -144,6 +150,7 @@ public class StockRecord extends Common{
 	 * @param stockUri
 	 * @param waterArea
 	 * @param type
+	 * @param faoState
 	 */
 	public StockRecord(
 			String stockName,
@@ -161,7 +168,8 @@ public class StockRecord extends Common{
 			List<TimeSeriesBean<String, String>> fishingPressure,
 			List<TimeSeriesBean<String, Void>> narrativeState,
 			String scientificAdvice, String assessor, String stockUri,
-			List<String> waterArea, Stock_Type type) {
+			List<String> waterArea, Stock_Type type,
+			List<TimeSeriesBean<String, Void>> faoState) {
 		super();
 		this.stockName = stockName;
 		this.stockId = stockId;
@@ -182,8 +190,11 @@ public class StockRecord extends Common{
 		this.stockUri = stockUri;
 		this.waterArea = waterArea;
 		this.type = type;
+		this.faoState = faoState;
 	}
 
+
+
 	public void setAssessmentMethods(List<String> assessmentMethods) {
 		this.assessmentMethods = assessmentMethods;
 	}
@@ -338,6 +349,18 @@ public class StockRecord extends Common{
 		this.exploitationRate = exploitationRate;
 	}
 
+	public List<TimeSeriesBean<String, Void>> getFaoState() {
+		return faoState;
+	}
+
+	public void setFaoState(List<TimeSeriesBean<String, Void>> faoState) {
+		this.faoState = faoState;
+	}
+
+	public List<String> getAssessmentMethods() {
+		return assessmentMethods;
+	}
+
 	@Override
 	public String toString() {
 		return "StockRecord [stockName=" + stockName + ", stockId=" + stockId
@@ -353,7 +376,8 @@ public class StockRecord extends Common{
 				+ ", fishingPressure=" + fishingPressure + ", narrativeState="
 				+ narrativeState + ", scientificAdvice=" + scientificAdvice
 				+ ", assessor=" + assessor + ", stockUri=" + stockUri
-				+ ", waterArea=" + waterArea + ", type=" + type + "]";
+				+ ", waterArea=" + waterArea + ", type=" + type + ", faoState="
+				+ faoState + "]";
 	}
 
 }

src/main/java/org/gcube/data_catalogue/grsf_publish_ws/services/GrsfPublisherFisheryService.java

@@ -291,6 +291,7 @@ public class GrsfPublisherFisheryService {
 
 								// write a post if the product has been published in grsf context
 								if(context.equals((String)contextServlet.getInitParameter(HelperMethods.PUBLIC_CONTEX_KEY))){
+									// TODO uncomment later
 									/*new WritePostCatalogueManagerThread(
 											context, 
 											token, 

src/main/java/org/gcube/data_catalogue/grsf_publish_ws/services/GrsfPublisherStockService.java

@@ -288,6 +288,7 @@ public class GrsfPublisherStockService {
 
 								// write a post if the product has been published in grsf context
 								if(context.equals((String)contextServlet.getInitParameter(HelperMethods.PUBLIC_CONTEX_KEY))){
+									// TODO uncomment later
 									/*new WritePostCatalogueManagerThread(
 											context, 
 											token,