570 lines
19 KiB
Java
570 lines
19 KiB
Java
package org.gcube.datacatalogue.grsf_manage_widget.server.manage;
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import static org.gcube.resources.discovery.icclient.ICFactory.client;
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import java.io.StringReader;
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import java.util.ArrayList;
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import java.util.Arrays;
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import java.util.HashMap;
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import java.util.List;
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import java.util.Map;
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import java.util.regex.Matcher;
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import java.util.regex.Pattern;
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import javax.servlet.http.HttpServletRequest;
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import javax.servlet.http.HttpSession;
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import javax.xml.parsers.DocumentBuilder;
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import javax.xml.parsers.DocumentBuilderFactory;
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import org.apache.http.impl.client.CloseableHttpClient;
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import org.apache.http.impl.client.HttpClientBuilder;
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import org.gcube.common.authorization.library.provider.SecurityTokenProvider;
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import org.gcube.common.portal.PortalContext;
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import org.gcube.common.resources.gcore.utils.XPathHelper;
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import org.gcube.common.scope.api.ScopeProvider;
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import org.gcube.datacatalogue.common.Constants;
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import org.gcube.datacatalogue.common.enums.Product_Type;
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import org.gcube.datacatalogue.common.enums.Status;
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import org.gcube.datacatalogue.grsf_manage_widget.shared.ConnectedBean;
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import org.gcube.datacatalogue.grsf_manage_widget.shared.ManageProductBean;
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import org.gcube.datacatalogue.grsf_manage_widget.shared.RevertableOperationInfo;
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import org.gcube.datacatalogue.grsf_manage_widget.shared.SimilarGRSFRecord;
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import org.gcube.datacatalogue.utillibrary.server.ApplicationProfileScopePerUrlReader;
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import org.gcube.datacatalogue.utillibrary.server.DataCatalogue;
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import org.gcube.datacatalogue.utillibrary.server.DataCatalogueRunningCluster;
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import org.gcube.datacatalogue.utillibrary.shared.jackan.model.CkanDataset;
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import org.gcube.datacatalogue.utillibrary.shared.jackan.model.CkanPair;
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import org.gcube.resources.discovery.client.api.DiscoveryClient;
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import org.gcube.resources.discovery.client.queries.api.Query;
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import org.gcube.resources.discovery.client.queries.impl.QueryBox;
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import org.gcube.vomanagement.usermanagement.model.GCubeUser;
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import org.json.simple.JSONObject;
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import org.json.simple.parser.JSONParser;
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import org.json.simple.parser.ParseException;
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import org.slf4j.Logger;
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import org.slf4j.LoggerFactory;
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import org.w3c.dom.Node;
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import org.w3c.dom.NodeList;
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import org.xml.sax.InputSource;
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import com.liferay.portal.service.UserLocalServiceUtil;
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/**
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* Utility methods for GRSF Management panel widget.
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*
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* @author Costantino Perciante at ISTI-CNR (costantino.perciante@isti.cnr.it)
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*/
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public class Utils {
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private static final Logger logger = LoggerFactory.getLogger(Utils.class);
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private static final String REGEX_UUID = "[0-9a-f]{8}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{12}";
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/**
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* Return a map for converting a key to a namespace:key format by reading a
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* generic resource.
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*
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* @param httpSession
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* @return a map
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*/
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@SuppressWarnings("unchecked")
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public static Map<String, String> getFieldToFieldNameSpaceMapping(HttpSession httpSession, String resourceName) {
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// check if this information is available in session
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String sessionKey = ScopeProvider.instance.get() + resourceName;
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if (httpSession.getAttribute(sessionKey) != null)
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return (Map<String, String>) httpSession.getAttribute(sessionKey);
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Map<String, String> namespacesMap = new HashMap<String, String>(); // e.g. fishery_identity:Short Title -> Short
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// Title
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try {
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Query q = new QueryBox("for $profile in collection('/db/Profiles/GenericResource')//Resource "
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+ "where $profile/Profile/SecondaryType/string() eq '" + "ApplicationProfile"
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+ "' and $profile/Profile/Name/string() " + " eq '" + resourceName + "'" + "return $profile");
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DiscoveryClient<String> client = client();
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List<String> appProfile = client.submit(q);
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if (appProfile == null || appProfile.size() == 0)
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throw new Exception("Your applicationProfile is not registered in the infrastructure");
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else {
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String elem = appProfile.get(0);
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DocumentBuilder docBuilder = DocumentBuilderFactory.newInstance().newDocumentBuilder();
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Node node = docBuilder.parse(new InputSource(new StringReader(elem))).getDocumentElement();
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XPathHelper helper = new XPathHelper(node);
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NodeList nodeListKeys = helper.evaluateForNodes("//originalKey");
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NodeList nodeListModifiedKeys = helper.evaluateForNodes("//modifiedKey");
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int sizeKeys = nodeListKeys != null ? nodeListKeys.getLength() : 0;
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int sizeKeysModifed = nodeListModifiedKeys != null ? nodeListModifiedKeys.getLength() : 0;
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if (sizeKeys != sizeKeysModifed)
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throw new Exception("Malformed XML");
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logger.debug("Size is " + sizeKeys);
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for (int i = 0; i < sizeKeys; i++) {
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namespacesMap.put(nodeListModifiedKeys.item(i).getTextContent(),
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nodeListKeys.item(i).getTextContent());
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}
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}
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logger.debug("Map is " + namespacesMap);
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// put them into session for speeding up the operations
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httpSession.setAttribute(sessionKey, namespacesMap);
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return namespacesMap;
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} catch (Exception e) {
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logger.error("Error while trying to fetch applicationProfile profile from the infrastructure", e);
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return null;
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}
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}
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/**
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* Replace the extras' keys if needed, e.g. fishery_identity:Short Title ->
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* Short Title
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*
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* @param extrasAsPairs
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* @param namespaces
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* @return a map with replaced key value pairs
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*/
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public static Map<String, List<String>> replaceFieldsKey(List<CkanPair> extrasAsPairs,
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Map<String, String> namespaces) {
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Map<String, List<String>> toReturn = new HashMap<String, List<String>>();
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for (CkanPair ckanPair : extrasAsPairs) {
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String pairKey = ckanPair.getKey();
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String pairValue = ckanPair.getValue();
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String replacedKey = namespaces.containsKey(pairKey) ? namespaces.get(pairKey) : pairKey;
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List<String> values = null;
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if (toReturn.containsKey(replacedKey))
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values = toReturn.get(replacedKey);
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else
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values = new ArrayList<String>(1);
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values.add(pairValue);
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toReturn.put(replacedKey, values);
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}
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return toReturn;
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}
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/**
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* Get the extras of this dataset as hashmap
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*
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* @param extrasAsPairs
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* @return
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*/
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public static Map<String, List<String>> getExtrasAsHashMap(List<CkanPair> extrasAsPairs) {
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Map<String, List<String>> toReturn = new HashMap<String, List<String>>();
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for (CkanPair ckanPair : extrasAsPairs) {
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String pairKey = ckanPair.getKey();
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String pairValue = ckanPair.getValue();
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List<String> values = null;
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if (toReturn.containsKey(pairKey))
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values = toReturn.get(pairKey);
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else
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values = new ArrayList<String>(1);
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values.add(pairValue);
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toReturn.put(pairKey, values);
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}
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return toReturn;
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}
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/**
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* Send an update for this bean
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*
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* @param baseUrl
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* @param bean
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* @param username
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* @param catalogue
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* @return true on success, false otherwise
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*/
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public static void updateRecord(String serviceUrl, final ManageProductBean bean, final DataCatalogue catalogue,
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final String username, final String fullName, final HttpServletRequest httpServletRequest,
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final long groupId, final String context, final String token) throws Exception {
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if (serviceUrl == null)
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throw new IllegalArgumentException("GRSF Updater service url cannot be null");
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if (bean == null)
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throw new IllegalArgumentException("Item bean to manage cannot be null");
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try (CloseableHttpClient httpClient = HttpClientBuilder.create().build();) {
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// ADDED BY FRANCESCO
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if (Utils.isIntoPortal()) {
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// send update to the knowledge base
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GRSFUpdaterServiceClient.updateKB(httpClient, serviceUrl, bean, catalogue, username, fullName);
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// if there are merges, update the status of the other involved records
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if (bean.isMergesInvolved())
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updateStatusInvolvedRecords(bean, username, catalogue);
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}
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// require social networking url
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final String baseUrlSocial = SocialCommunications.getBaseUrlSocialService(httpServletRequest);
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// and the user current browser url
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final String currentBrowserUrl = Utils.getCurrentClientUrl(httpServletRequest).split("\\?")[0]; // ignore
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// other
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// parameters
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// manage interactions through a separated thread but set there security token
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// and context (and then reset them)
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Thread t = new Thread(new Runnable() {
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@Override
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public void run() {
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ScopeProvider.instance.set(context);
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SecurityTokenProvider.instance.set(token);
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try {
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// send email to Editors and Reviewers
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SocialCommunications.sendEmailAdministrators(baseUrlSocial, bean, catalogue, username, fullName,
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groupId, currentBrowserUrl, bean.isMergesInvolved());
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// create a post about the operation
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SocialCommunications.writeProductPost(baseUrlSocial, bean, username, fullName, false,
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currentBrowserUrl);
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} catch (Exception e) {
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logger.error("Something failed while alerting editors/reviewers", e);
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} finally {
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ScopeProvider.instance.reset();
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SecurityTokenProvider.instance.reset();
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}
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}
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});
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t.start();
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} catch (Exception e) {
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logger.error("Unable to update this Item ", e);
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throw e;
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}
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}
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/**
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* Revert operation and alert admins/vre users
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*
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* @author Costantino Perciante at ISTI-CNR (costantino.perciante@isti.cnr.it)
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* @param httpClient
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* @param baseUrl
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* @param fullName
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* @param uuid
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*/
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public static void revertOperation(CloseableHttpClient httpClient, String baseUrl,
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HttpServletRequest httpServletRequest, final RevertableOperationInfo rInfo, final String token,
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final String context, final long groupId) throws Exception {
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GRSFUpdaterServiceClient.revertOperation(httpClient, baseUrl, rInfo.getFullNameCurrentAdmin(), rInfo.getUuid());
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// require social networking url
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final String baseUrlSocial = SocialCommunications.getBaseUrlSocialService(httpServletRequest);
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// and the user current browser url
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final String currentBrowserUrl = Utils.getCurrentClientUrl(httpServletRequest).split("\\?")[0]; // ignore other
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// parameters
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// manage interactions through a separated thread but set there security token
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// and context (and then reset them)
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Thread t = new Thread(new Runnable() {
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@Override
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public void run() {
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ScopeProvider.instance.set(context);
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SecurityTokenProvider.instance.set(token);
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try {
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// write post about this
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SocialCommunications.writePostOnRevert(baseUrlSocial, rInfo, false, currentBrowserUrl);
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// alert who's involved
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SocialCommunications.sendEmailAdministratorsOnOperationReverted(baseUrlSocial, rInfo, groupId);
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} catch (Exception e) {
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logger.error("Something failed while alerting editors/reviewers", e);
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} finally {
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ScopeProvider.instance.reset();
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SecurityTokenProvider.instance.reset();
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}
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}
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});
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t.start();
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}
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/**
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* Update the status of the involved records to "to be merged".
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*
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* @param bean the bean
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* @param username the username
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* @param catalogue the catalogue
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* @throws Exception the exception
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*/
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private static void updateStatusInvolvedRecords(ManageProductBean bean, String username, DataCatalogue catalogue)
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throws Exception {
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// String context = ScopeProvider.instance.get();
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// String sysApi = fetchSysAPI(context);
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for (SimilarGRSFRecord s : bean.getSimilarGrsfRecords()) {
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if (s.isSuggestedMerge()) {
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String productId = s.getKnowledgeBaseId();
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Map<String, List<String>> updateStatus = new HashMap<String, List<String>>(1);
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updateStatus.put(Constants.STATUS_OF_THE_GRSF_RECORD_CUSTOM_KEY,
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Arrays.asList(Status.To_be_Merged.getOrigName()));
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// Fixing bug #23561, passing username (instead of sysAPI)
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catalogue.patchProductCustomFields(productId, username, updateStatus, true);
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}
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}
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}
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/**
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* Get the scope in which ckan information needs to be discovered from the url
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*
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* @param httpServletRequest
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* @return
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*/
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public static String getScopeFromClientUrl(HttpServletRequest httpServletRequest) {
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if (httpServletRequest == null)
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throw new IllegalArgumentException("HttpServletRequest is null!");
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String scopeToReturn = null;
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try {
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String clientUrl = getCurrentClientUrl(httpServletRequest).split("\\?")[0];
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logger.debug("Client url is " + clientUrl);
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// check if this information is in session, otherwise set it and return
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HttpSession session = httpServletRequest.getSession();
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if ((scopeToReturn = (String) session.getAttribute(clientUrl)) != null) {
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logger.debug("Scope to return is " + scopeToReturn);
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} else {
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// ask to the ckan library and set it
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scopeToReturn = ApplicationProfileScopePerUrlReader.getScopePerUrl(clientUrl);
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logger.debug("Scope to return is " + scopeToReturn);
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session.setAttribute(clientUrl, scopeToReturn);
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}
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} catch (Exception e) {
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scopeToReturn = getCurrentContext(httpServletRequest, true);
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logger.warn(
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"Failed to determine the scope from the client url, returning the current one: " + scopeToReturn);
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}
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return scopeToReturn;
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}
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/**
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* Needed to get the url of the client
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*
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* @param httpServletRequest the httpServletRequest object
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* @return the instance of the user
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* @see the url at client side
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*/
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public static String getCurrentClientUrl(HttpServletRequest httpServletRequest) {
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if (httpServletRequest == null)
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throw new IllegalArgumentException("HttpServletRequest is null!");
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return httpServletRequest.getHeader(Constants.GCUBE_REQUEST_URL);
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}
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/**
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* Retrieve the current scope by using the portal manager
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*
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* @param b
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* @return a GcubeUser object
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*/
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public static String getCurrentContext(HttpServletRequest request, boolean setInThread) {
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if (request == null)
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throw new IllegalArgumentException("HttpServletRequest is null!");
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PortalContext pContext = PortalContext.getConfiguration();
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String context = pContext.getCurrentScope(request);
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logger.debug("Returning context " + context);
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if (context != null && setInThread)
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ScopeProvider.instance.set(context);
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return context;
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}
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/**
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* Retrieve the current user by using the portal manager
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*
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* @return a GcubeUser object
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*/
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public static GCubeUser getCurrentUser(HttpServletRequest request) {
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if (request == null)
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throw new IllegalArgumentException("HttpServletRequest is null!");
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PortalContext pContext = PortalContext.getConfiguration();
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GCubeUser user = pContext.getCurrentUser(request);
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logger.debug("Returning user " + user);
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return user;
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}
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/**
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* Exploits the fact that in GRSF the url of a record contains the name (which
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* is unique) of the record itself.
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*
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* @param url the url
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* @param clg the clg
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* @param username the username
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* @return the dataset from url
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* @throws Exception the exception
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*/
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public static CkanDataset getDatasetFromUrl(String url, DataCatalogue clg, String username) throws Exception {
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if (url == null || url.isEmpty())
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return null;
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// Parse url
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// Create a Pattern object
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Pattern r = Pattern.compile(REGEX_UUID);
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// Now create matcher object.
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Matcher m = r.matcher(url);
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if (m.find()) {
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String uuidFound = m.group();
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logger.debug("Found match for uuid " + uuidFound);
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return clg.getDataset(uuidFound, username);
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}
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throw new Exception("No record exists with such url " + url);
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}
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/**
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* Exploits the fact that in GRSF the url of a record contains the name (which
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* is unique) of the record itself
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*
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* @param url
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* @param clg
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* @return
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*/
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public static String getDatasetKnowledgeBaseIdFromUrl(String url) {
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if (url == null || url.isEmpty())
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return null;
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// Parse url
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// Create a Pattern object
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Pattern r = Pattern.compile(REGEX_UUID);
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// Now create matcher object.
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Matcher m = r.matcher(url);
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if (m.find()) {
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String uuidFound = m.group();
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logger.debug("Found match for uuid " + uuidFound);
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return uuidFound;
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}
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return null;
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}
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/**
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* Get a {@link SimilarGRSFRecord} from a json string
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*
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* @param json
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* @return {@link SimilarGRSFRecord}
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* @throws ParseException
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*/
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public static SimilarGRSFRecord similarGRSFRecordFromJson(String json, DataCatalogue ctl, String username,
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HttpSession httpSession) throws ParseException {
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if (json == null)
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return null;
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JSONParser parser = new JSONParser();
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JSONObject object = (JSONObject) parser.parse(json);
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String uuid = getDatasetKnowledgeBaseIdFromUrl((String) object.get(Constants.SIMILAR_RECORDS_BEAN_FIELD_URL));
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CkanDataset dataset = ctl.getDataset(uuid, username);
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boolean isStock = dataset.getExtrasAsHashMap().get(Constants.DOMAIN_CUSTOM_KEY)
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.contains(Product_Type.STOCK.getOrigName());
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Map<String, String> fieldsNamespacesMap = Utils.getFieldToFieldNameSpaceMapping(httpSession,
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isStock ? Constants.GENERIC_RESOURCE_NAME_MAP_KEY_NAMESPACES_STOCK
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: Constants.GENERIC_RESOURCE_NAME_MAP_KEY_NAMESPACES_FISHERY);
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Map<String, List<String>> extrasWithoutNamespaces = Utils.replaceFieldsKey(dataset.getExtras(),
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fieldsNamespacesMap);
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return new SimilarGRSFRecord(uuid, (String) object.get(Constants.SIMILAR_RECORDS_BEAN_FIELD_DESCRIPTION),
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(String) object.get(Constants.SIMILAR_RECORDS_BEAN_FIELD_NAME), dataset.getTitle(),
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(String) object.get(Constants.SIMILAR_RECORDS_BEAN_FIELD_URL),
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extrasWithoutNamespaces.get(Constants.GRSF_SEMANTIC_IDENTIFIER_CUSTOM_KEY).get(0),
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extrasWithoutNamespaces.get(Constants.DOMAIN_CUSTOM_KEY).get(0));
|
|
|
|
}
|
|
|
|
/**
|
|
* Checks if is into portal.
|
|
*
|
|
* @return true, if is into portal
|
|
*/
|
|
public static boolean isIntoPortal() {
|
|
try {
|
|
UserLocalServiceUtil.getService();
|
|
return true;
|
|
} catch (Exception ex) {
|
|
logger.debug("Development Mode ON");
|
|
return false;
|
|
}
|
|
}
|
|
|
|
/**
|
|
* Get Connected bean from record.
|
|
*
|
|
* @param destUrl the dest url
|
|
* @param clg the clg
|
|
* @param username the username
|
|
* @param httpSession the http session
|
|
* @return the connected bean
|
|
* @throws ParseException the parse exception
|
|
*/
|
|
public static ConnectedBean connectedBeanRecordFromUrl(String destUrl, DataCatalogue clg, String username,
|
|
HttpSession httpSession) throws ParseException {
|
|
|
|
if (destUrl == null)
|
|
return null;
|
|
|
|
String connectedBeanUuid = getDatasetKnowledgeBaseIdFromUrl(destUrl);
|
|
CkanDataset destDataset = clg.getDataset(connectedBeanUuid, username);
|
|
boolean isStock = destDataset.getExtrasAsHashMap().get(Constants.DOMAIN_CUSTOM_KEY)
|
|
.contains(Product_Type.STOCK.getOrigName());
|
|
Map<String, String> fieldsNamespacesMap = Utils.getFieldToFieldNameSpaceMapping(httpSession,
|
|
isStock ? Constants.GENERIC_RESOURCE_NAME_MAP_KEY_NAMESPACES_STOCK
|
|
: Constants.GENERIC_RESOURCE_NAME_MAP_KEY_NAMESPACES_FISHERY);
|
|
Map<String, List<String>> extrasWithoutNamespaces = Utils.replaceFieldsKey(destDataset.getExtras(),
|
|
fieldsNamespacesMap);
|
|
String semanticId = extrasWithoutNamespaces.get(Constants.GRSF_SEMANTIC_IDENTIFIER_CUSTOM_KEY).get(0);
|
|
String destDomain = extrasWithoutNamespaces.get(Constants.DOMAIN_CUSTOM_KEY).get(0);
|
|
String shortName = extrasWithoutNamespaces.get(Constants.SHORT_NAME_CUSTOM_KEY).get(0);
|
|
String description = destDataset.getNotes();
|
|
|
|
return new ConnectedBean(connectedBeanUuid, description, shortName, destDataset.getTitle(), destUrl, semanticId,
|
|
destDomain);
|
|
|
|
}
|
|
|
|
/**
|
|
* Fetch the sysadmin key from the IS for this catalogue
|
|
*
|
|
* @return
|
|
* @throws Exception
|
|
*/
|
|
public static String fetchSysAPI(String context) throws Exception {
|
|
DataCatalogueRunningCluster catalogueRunningInstance = new DataCatalogueRunningCluster(context);
|
|
return catalogueRunningInstance.getSysAdminToken();
|
|
}
|
|
|
|
}
|