Uses of Class
org.gcube.dataanalysis.ecoengine.configuration.AlgorithmConfiguration

Packages that use AlgorithmConfiguration
org.gcube.dataanalysis.ecoengine.clustering   
org.gcube.dataanalysis.ecoengine.configuration   
org.gcube.dataanalysis.ecoengine.interfaces   
org.gcube.dataanalysis.ecoengine.modeling   
org.gcube.dataanalysis.ecoengine.models   
org.gcube.dataanalysis.ecoengine.models.cores.pca   
org.gcube.dataanalysis.ecoengine.models.testing   
org.gcube.dataanalysis.ecoengine.processing   
org.gcube.dataanalysis.ecoengine.processing.factories   
org.gcube.dataanalysis.ecoengine.spatialdistributions   
org.gcube.dataanalysis.ecoengine.test   
org.gcube.dataanalysis.ecoengine.test.checks   
org.gcube.dataanalysis.ecoengine.test.experiments.latimeria   
org.gcube.dataanalysis.ecoengine.test.regression   
org.gcube.dataanalysis.ecoengine.test.tablescomparisons   
org.gcube.dataanalysis.ecoengine.transducers   
org.gcube.dataanalysis.ecoengine.user   
org.gcube.dataanalysis.ecoengine.utils   
 

Uses of AlgorithmConfiguration in org.gcube.dataanalysis.ecoengine.clustering
 

Fields in org.gcube.dataanalysis.ecoengine.clustering declared as AlgorithmConfiguration
protected  AlgorithmConfiguration DBScan.config
           
 

Methods in org.gcube.dataanalysis.ecoengine.clustering with parameters of type AlgorithmConfiguration
 void XMeansWrapper.setConfiguration(AlgorithmConfiguration config)
           
 void KMeans.setConfiguration(AlgorithmConfiguration config)
           
 void DBScan.setConfiguration(AlgorithmConfiguration config)
           
 

Uses of AlgorithmConfiguration in org.gcube.dataanalysis.ecoengine.configuration
 

Methods in org.gcube.dataanalysis.ecoengine.configuration with parameters of type AlgorithmConfiguration
static org.hibernate.SessionFactory AlgorithmConfiguration.getConnectionFromConfig(AlgorithmConfiguration Input)
           
 

Uses of AlgorithmConfiguration in org.gcube.dataanalysis.ecoengine.interfaces
 

Fields in org.gcube.dataanalysis.ecoengine.interfaces declared as AlgorithmConfiguration
protected  AlgorithmConfiguration DataAnalysis.config
           
 

Methods in org.gcube.dataanalysis.ecoengine.interfaces with parameters of type AlgorithmConfiguration
 void SpatialProbabilityDistributionGeneric.init(AlgorithmConfiguration config)
           
 void Model.init(AlgorithmConfiguration Input, Model previousModel)
           
 void SpatialProbabilityDistributionTable.init(AlgorithmConfiguration config, org.hibernate.SessionFactory dbHibConnection)
           
abstract  void SpatialProbabilityDistributionNode.initSingleNode(AlgorithmConfiguration config)
           
abstract  void ActorNode.initSingleNode(AlgorithmConfiguration config)
           
 void Model.postprocess(AlgorithmConfiguration Input, Model previousModel)
           
 void DataAnalysis.setConfiguration(AlgorithmConfiguration config)
           
 void ComputationalAgent.setConfiguration(AlgorithmConfiguration config)
           
abstract  void SpatialProbabilityDistributionNode.setup(AlgorithmConfiguration config)
           
abstract  void ActorNode.setup(AlgorithmConfiguration config)
           
 void Model.train(AlgorithmConfiguration Input, Model previousModel)
           
 

Uses of AlgorithmConfiguration in org.gcube.dataanalysis.ecoengine.modeling
 

Fields in org.gcube.dataanalysis.ecoengine.modeling declared as AlgorithmConfiguration
protected  AlgorithmConfiguration SimpleModeler.Input
           
 

Methods in org.gcube.dataanalysis.ecoengine.modeling with parameters of type AlgorithmConfiguration
 void SimpleModeler.setConfiguration(AlgorithmConfiguration config)
           
 

Uses of AlgorithmConfiguration in org.gcube.dataanalysis.ecoengine.models
 

Methods in org.gcube.dataanalysis.ecoengine.models with parameters of type AlgorithmConfiguration
 void ModelHSPEN.init(AlgorithmConfiguration setup, Model previousModel)
           
 void ModelAquamapsNNNS.init(AlgorithmConfiguration Input, Model previousModel)
           
 void ModelAquamapsNN.init(AlgorithmConfiguration Input, Model previousModel)
           
 void FeedForwardNN.init(AlgorithmConfiguration config, Model previousModel)
           
 void ModelHSPEN.postprocess(AlgorithmConfiguration Input, Model previousModel)
           
 void ModelAquamapsNNNS.postprocess(AlgorithmConfiguration Input, Model previousModel)
           
 void ModelAquamapsNN.postprocess(AlgorithmConfiguration Input, Model previousModel)
           
 void ModelHSPEN.train(AlgorithmConfiguration Input, Model previousModel)
           
 void ModelAquamapsNNNS.train(AlgorithmConfiguration Input, Model previousModel)
           
 void ModelAquamapsNN.train(AlgorithmConfiguration Input, Model previousModel)
           
 void FeedForwardNN.train(AlgorithmConfiguration Input, Model previousModel)
           
 

Uses of AlgorithmConfiguration in org.gcube.dataanalysis.ecoengine.models.cores.pca
 

Methods in org.gcube.dataanalysis.ecoengine.models.cores.pca with parameters of type AlgorithmConfiguration
 void PrincipalComponentAnalysis.init(AlgorithmConfiguration config)
           
 

Uses of AlgorithmConfiguration in org.gcube.dataanalysis.ecoengine.models.testing
 

Methods in org.gcube.dataanalysis.ecoengine.models.testing with parameters of type AlgorithmConfiguration
 void FeedForwardNNFile.init(AlgorithmConfiguration config, Model previousModel)
           
 void FeedForwardNNFile.train(AlgorithmConfiguration Input, Model previousModel)
           
 

Uses of AlgorithmConfiguration in org.gcube.dataanalysis.ecoengine.processing
 

Fields in org.gcube.dataanalysis.ecoengine.processing declared as AlgorithmConfiguration
protected  AlgorithmConfiguration LocalSimpleSplitGenerator.config
           
 

Methods in org.gcube.dataanalysis.ecoengine.processing with parameters of type AlgorithmConfiguration
 void RainyCloudGenerator.setConfiguration(AlgorithmConfiguration config)
           
 void LocalSplitGenerator.setConfiguration(AlgorithmConfiguration config)
           
 void LocalSimpleSplitGenerator.setConfiguration(AlgorithmConfiguration config)
           
 

Constructors in org.gcube.dataanalysis.ecoengine.processing with parameters of type AlgorithmConfiguration
LocalSplitGenerator(AlgorithmConfiguration config)
           
RainyCloudGenerator(AlgorithmConfiguration config)
           
 

Uses of AlgorithmConfiguration in org.gcube.dataanalysis.ecoengine.processing.factories
 

Methods in org.gcube.dataanalysis.ecoengine.processing.factories with parameters of type AlgorithmConfiguration
static Clusterer ClusterersFactory.getClusterer(AlgorithmConfiguration config)
           
static List<ComputationalAgent> ClusterersFactory.getClusterers(AlgorithmConfiguration config)
           
static Evaluator EvaluatorsFactory.getEvaluator(AlgorithmConfiguration config)
           
static List<ComputationalAgent> EvaluatorsFactory.getEvaluators(AlgorithmConfiguration config)
           
static Generator GeneratorsFactory.getGenerator(AlgorithmConfiguration config)
           
static List<ComputationalAgent> GeneratorsFactory.getGenerators(AlgorithmConfiguration config)
           
static Modeler ModelersFactory.getModeler(AlgorithmConfiguration config)
           
static List<ComputationalAgent> ModelersFactory.getModelers(AlgorithmConfiguration config)
           
static ComputationalAgent ProcessorsFactory.getProcessor(AlgorithmConfiguration config, String file)
           
static ComputationalAgent ProcessorsFactory.getProcessor(AlgorithmConfiguration config, String file, String explicitAlgorithm)
           
static Transducerer TransducerersFactory.getTransducerer(AlgorithmConfiguration config)
           
static List<ComputationalAgent> TransducerersFactory.getTransducerers(AlgorithmConfiguration config)
           
 

Uses of AlgorithmConfiguration in org.gcube.dataanalysis.ecoengine.spatialdistributions
 

Fields in org.gcube.dataanalysis.ecoengine.spatialdistributions declared as AlgorithmConfiguration
protected  AlgorithmConfiguration BayesianDistribution.config
           
 

Methods in org.gcube.dataanalysis.ecoengine.spatialdistributions with parameters of type AlgorithmConfiguration
 void TestAlgorithm.init(AlgorithmConfiguration config)
           
 void DummyAlgorithm.init(AlgorithmConfiguration config)
           
 void BayesianDistribution.init(AlgorithmConfiguration config)
           
 void AquamapsSuitable2050.init(AlgorithmConfiguration config, org.hibernate.SessionFactory dbHibConnection)
           
 void AquamapsSuitable.init(AlgorithmConfiguration config, org.hibernate.SessionFactory dbHibConnection)
           
 void AquamapsNNSuitable.init(AlgorithmConfiguration config, org.hibernate.SessionFactory dbHibConnection)
           
 void AquamapsNNNS.init(AlgorithmConfiguration config, org.hibernate.SessionFactory dbHibConnection)
           
 void AquamapsNN.init(AlgorithmConfiguration config, org.hibernate.SessionFactory dbHibConnection)
           
 void AquamapsNative2050.init(AlgorithmConfiguration config, org.hibernate.SessionFactory dbHibConnection)
           
 

Uses of AlgorithmConfiguration in org.gcube.dataanalysis.ecoengine.test
 

Constructors in org.gcube.dataanalysis.ecoengine.test with parameters of type AlgorithmConfiguration
TablesComparison(AlgorithmConfiguration config)
           
TablesComparisonLatimeria(AlgorithmConfiguration config)
           
 

Uses of AlgorithmConfiguration in org.gcube.dataanalysis.ecoengine.test.checks
 

Constructors in org.gcube.dataanalysis.ecoengine.test.checks with parameters of type AlgorithmConfiguration
TestEvaluation.ThreadCalculator(ComputationalAgent dg, AlgorithmConfiguration config)
           
TestsHSPENTraining.ThreadCalculator(ComputationalAgent dg, AlgorithmConfiguration config)
           
 

Uses of AlgorithmConfiguration in org.gcube.dataanalysis.ecoengine.test.experiments.latimeria
 

Methods in org.gcube.dataanalysis.ecoengine.test.experiments.latimeria that return AlgorithmConfiguration
static AlgorithmConfiguration TablesComparisonForLatimeria.configDiscrepancyAnalysis(String table1, String table2)
           
static AlgorithmConfiguration TablesComparisonForLatimeria.getConfig()
           
 

Uses of AlgorithmConfiguration in org.gcube.dataanalysis.ecoengine.test.regression
 

Methods in org.gcube.dataanalysis.ecoengine.test.regression that return AlgorithmConfiguration
static AlgorithmConfiguration Regressor.getConfig()
           
 

Uses of AlgorithmConfiguration in org.gcube.dataanalysis.ecoengine.test.tablescomparisons
 

Constructors in org.gcube.dataanalysis.ecoengine.test.tablescomparisons with parameters of type AlgorithmConfiguration
TablesComparison(AlgorithmConfiguration config)
           
 

Uses of AlgorithmConfiguration in org.gcube.dataanalysis.ecoengine.transducers
 

Fields in org.gcube.dataanalysis.ecoengine.transducers declared as AlgorithmConfiguration
protected  AlgorithmConfiguration QueryExecutor.config
           
protected  AlgorithmConfiguration OccurrencePointsMerger.config
           
protected  AlgorithmConfiguration InterpolationTransducer.config
           
protected  AlgorithmConfiguration BioClimateHSPECTransducer.config
           
 

Methods in org.gcube.dataanalysis.ecoengine.transducers with parameters of type AlgorithmConfiguration
 void TestTrans.setConfiguration(AlgorithmConfiguration config)
           
 void QueryExecutor.setConfiguration(AlgorithmConfiguration config)
           
 void OccurrencePointsMerger.setConfiguration(AlgorithmConfiguration config)
           
 void InterpolationTransducer.setConfiguration(AlgorithmConfiguration config)
           
 void BioClimateHSPECTransducer.setConfiguration(AlgorithmConfiguration config)
           
 

Uses of AlgorithmConfiguration in org.gcube.dataanalysis.ecoengine.user
 

Methods in org.gcube.dataanalysis.ecoengine.user that return AlgorithmConfiguration
static AlgorithmConfiguration EvaluatorT.getDiscrepancyConfiguration(String operationName, String firstTable, String secondTable, String firstTableCsquareColumn, String secondTableCsquareColumn, String firstTableProbabilityColumn, String secondTableProbabilityColumn, String comparisonThreshold, String configPath)
           
static AlgorithmConfiguration EvaluatorT.getEvaluationConfiguration(String configPath, String operationName, String positiveCasesTable, String negativeCasesTable, String positiveCasesTableKeyColumn, String negativeCasesKeyColumn, String finalDistributionTable, String finalDistributionTableKeyColumn, String finalDistributionTableProbabilityColumn, String positiveThreshold, String negativeThreshold)
           
static AlgorithmConfiguration GeneratorT.getGenerationConfig(int numberOfResources, String algorithmName, String envelopeTable, String preprocessedTable, String speciesName, String userName, String csquareTable, String finalDistributionTable, String configPath)
           
static AlgorithmConfiguration ModelerT.getTrainingConfig(String modelName, String absenceTable, String presenceTable, String speciesCode, String userName, String layersNeurons, String configPath)
           
static AlgorithmConfiguration ModelerT.getTrainingConfigHSPEN(String modelName, String outputTable, String occurrenceCells, String hspenOrigin, String hcaf, String configPath)
           
 

Methods in org.gcube.dataanalysis.ecoengine.user with parameters of type AlgorithmConfiguration
static void EvaluatorT.evaluate(AlgorithmConfiguration config)
           
static void GeneratorT.generate(AlgorithmConfiguration config)
           
static void ModelerT.train(AlgorithmConfiguration config)
           
 

Constructors in org.gcube.dataanalysis.ecoengine.user with parameters of type AlgorithmConfiguration
EvaluatorT(ComputationalAgent dg, AlgorithmConfiguration config)
           
ModelerT(ComputationalAgent dg, AlgorithmConfiguration config)
           
 

Uses of AlgorithmConfiguration in org.gcube.dataanalysis.ecoengine.utils
 

Methods in org.gcube.dataanalysis.ecoengine.utils that return AlgorithmConfiguration
static AlgorithmConfiguration PresetConfigGenerator.configAbsenceTable(boolean random, String absenceTable, String hspecTable, int numberOfPoints, String speciesCode)
           
static AlgorithmConfiguration PresetConfigGenerator.configAquamapsNative(String aquamapsNativeTable, String envelopeTable)
           
static AlgorithmConfiguration PresetConfigGenerator.configAquamapsNNNative(String tableName, String username, String envelopeTable, String speciesID, String nnname)
           
static AlgorithmConfiguration PresetConfigGenerator.configAquamapsNNSuitable(String tableName, String username, String envelopeTable, String speciesID, String nnname)
           
static AlgorithmConfiguration PresetConfigGenerator.configAquamapsSuitable(String aquamapsSuitableTable, String envelopeTable)
           
static AlgorithmConfiguration PresetConfigGenerator.configDiscrepancyAnalysis(String table1, String table2)
           
static AlgorithmConfiguration PresetConfigGenerator.configHCAFfilter(String table, float x1, float y1, float x2, float y2)
           
static AlgorithmConfiguration PresetConfigGenerator.configHRSAnalysis(String projectiontable, String absenceTable, String presenceTable)
           
static AlgorithmConfiguration PresetConfigGenerator.configHSPENfilter(String table, String speciesList)
           
static AlgorithmConfiguration PresetConfigGenerator.configNativeNeuralNetworkTraining(String presenceTable, String absenceTable, String username, String speciesID, String neuronsAndLayers, String nnname)
           
static AlgorithmConfiguration PresetConfigGenerator.configPresenceTable(String presenceTable, int numberOfPoints, String speciesCode)
           
static AlgorithmConfiguration PresetConfigGenerator.configQualityAnalysis(String presenceTable, String absenceTable, String table)
           
static AlgorithmConfiguration PresetConfigGenerator.configSuitableNeuralNetworkTraining(String presenceTable, String absenceTable, String username, String speciesID, String neuronsAndLayers, String nnname)
           
static AlgorithmConfiguration Transformations.restoreConfig(String configFile)
           
 

Methods in org.gcube.dataanalysis.ecoengine.utils with parameters of type AlgorithmConfiguration
static void Transformations.dumpConfig(String pathToFile, AlgorithmConfiguration config)
           
 void TrainingSetsGenerator.generate(AlgorithmConfiguration config)
           
 void TrainingSetsGenerator.init(AlgorithmConfiguration config)
           
static org.hibernate.SessionFactory DatabaseUtils.initDBSession(AlgorithmConfiguration config)
           
 

Constructors in org.gcube.dataanalysis.ecoengine.utils with parameters of type AlgorithmConfiguration
HspecDiscrepanciesCalculator(AlgorithmConfiguration config)
           
TablesDiscrepanciesCalculator(AlgorithmConfiguration config)
           
 



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