Updated for release 4.28

src/main/java/org/gcube/dataanalysis/ecoengine/utils/Sha1.java

@@ -45,18 +45,18 @@ public class Sha1 {
 
 			// Bug
 			//
-			RE regex = new RE("[a-z]");
+			// RE regex = new RE("[a-z]");
+			// for (int i = 0; i < len; i++) {
+			// String chars = "" + filestring.charAt(i);
+			// boolean optioned = regex.match(chars);
+
+			// Fix
+			Pattern p = Pattern.compile("[a-z]");
+
 			for (int i = 0; i < len; i++) {
 				String chars = "" + filestring.charAt(i);
-				boolean optioned = regex.match(chars);
-
-				// Fix
-				// Pattern p = Pattern.compile("[a-z]");
-				//
-				// for (int i = 0; i < len; i++) {
-				// String chars = "" + filestring.charAt(i);
-				// Matcher m = p.matcher(chars);
-				// boolean optioned = m.matches();
+				Matcher m = p.matcher(chars);
+				boolean optioned = m.matches();
 
 				if (optioned) {
 					counter++;

src/main/java/org/gcube/dataanalysis/ecoengine/utils/Transformations.java

@@ -219,25 +219,25 @@ public class Transformations {
 					
 					//Bug RE
 					//
-					RE regexp = new RE("[^\\\\]\"");
-					boolean matching = regexp.match(phrase);
+					//RE regexp = new RE("[^\\\\]\"");
+					//boolean matching = regexp.match(phrase);
 					
-					if (matching) {
-					  int i0 = regexp.getParenStart(0);
-					  quoted = phrase.substring(0, i0 + 1).trim();
-					  phrase = phrase.substring(i0 + 2).trim();
-					}
-					
-					//Fix
-					//Pattern p = Pattern.compile("[^\\\\]\"");
-					//Matcher m = p.matcher(phrase);
-					//boolean matching = m.matches(); 
-					//
 					//if (matching) {
-					//	int i0 = m.start();
-					//	quoted = phrase.substring(0, i0 + 1).trim();
-					//	phrase = phrase.substring(i0 + 2).trim();
+					//  int i0 = regexp.getParenStart(0);
+					// quoted = phrase.substring(0, i0 + 1).trim();
+					//  phrase = phrase.substring(i0 + 2).trim();
 					//}
+					
+					//Fix
+					Pattern p = Pattern.compile("[^\\\\]\"");
+					Matcher m = p.matcher(phrase);
+					boolean matching = m.matches(); 
+					
+					if (matching) {
+						int i0 = m.start();
+						quoted = phrase.substring(0, i0 + 1).trim();
+						phrase = phrase.substring(i0 + 2).trim();
+					}
 				}
 
 				if (phrase.startsWith(delimiter))