gCubeSystem
/
ecological-engine
15
0
Fork 0
Code Issues Pull Requests Releases Wiki Activity

git-svn-id: https://svn.d4science.research-infrastructures.eu/gcube/trunk/data-analysis/EcologicalEngine@52234 82a268e6-3cf1-43bd-a215-b396298e98cf

This commit is contained in:
Gianpaolo Coro 2012-03-29 10:17:48 +00:00
parent 413871c96b
commit 8e7a03a02d
5 changed files with 144 additions and 2 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

59
src/org/gcube/dataanalysis/ecoengine/evaluation/bioclimate/ExperimentForArticle.java Normal file
View File

@ -0,0 +1,59 @@
package org.gcube.dataanalysis.ecoengine.evaluation.bioclimate;
import org.gcube.dataanalysis.ecoengine.user.GeneratorT;
import org.gcube.dataanalysis.ecoengine.user.ModelerT;
public class ExperimentForArticle {
public static void main(String[] args) throws Exception {
String configPath = "./cfg/";
final String[] csquareTables = {
"hcaf_d_2016_linear_01332632269756",
"hcaf_d_2020_linear_11332632270082",
"hcaf_d_2024_linear_21332632270343",
"hcaf_d_2028_linear_31332632270608",
"hcaf_d_2032_linear_41332632270847",
"hcaf_d_2036_linear_51332632271080",
"hcaf_d_2040_linear_61332632271334",
"hcaf_d_2044_linear_71332632271560",
"hcaf_d_2050"
};
final String [] envelopeOutputTable = {"hspen_2016","hspen_2020","hspen_2024","hspen_2028","hspen_2032","hspen_2036","hspen_2040","hspen_2044","hspen_2050"};
final String [] finalDistributionTable = { "hspec_2016", "hspec_2020", "hspec_2024", "hspec_2028", "hspec_2032", "hspec_2036", "hspec_2040", "hspec_2044", "hspec_2050"};
/*
String [] csquareTable = {"hcaf_d","hcaf_d_2050"};
String [] envelopeOutputTable = {"hspen_micro_0","hspen_micro_2050"};
String [] finalDistributionTable = {"hspec_0","hspec_2050"};
*/
String preprocessedTable = "maxminlat_hspen";
String envelopeTable = "hspen";
String occurrenceCells = "occurrenceCells";
String commonkeycolumn = "csquarecode";
String probabilitycolumn = "probability";
int numberOfResources = 4;
String speciesCode = "Fis-10199";
String userName = "gianpaolo.coro";
String modelName = "HSPEN";
String generatorName = "AQUAMAPS_SUITABLE";
String qualityOperationName = "QUALITY_ANALYSIS";
String discrepancyOperationName = "DISCREPANCY_ANALYSIS";
String finalDistributionKeyColumn = "csquarecode";
for (int i =0;i<csquareTables.length;i++){
// Train
System.out.println("Generating-> "+ envelopeOutputTable[i]);
ModelerT.train(ModelerT.getTrainingConfigHSPEN(modelName, envelopeOutputTable[i], occurrenceCells,envelopeTable,csquareTables[i],configPath));
// Generate
// GeneratorT.generate(GeneratorT.getGenerationConfig(numberOfResources, generatorName, envelopeOutputTable[i], preprocessedTable, speciesCode, userName, csquareTables[i], finalDistributionTable[i], configPath));
}
System.out.println("COMPUTATION FINISHED!");
}
}

82
src/org/gcube/dataanalysis/ecoengine/evaluation/bioclimate/ExperimentHSPECForArticle.java Normal file
View File

@ -0,0 +1,82 @@
package org.gcube.dataanalysis.ecoengine.evaluation.bioclimate;
import org.gcube.dataanalysis.ecoengine.user.GeneratorT;
import org.gcube.dataanalysis.ecoengine.user.ModelerT;
public class ExperimentHSPECForArticle {
public static void main(String[] args) throws Exception {
String configPath = "./cfg/";
final String[] csquareTables = {
"hcaf_d",
"hcaf_d_2016_linear_01332632269756",
"hcaf_d_2020_linear_11332632270082",
"hcaf_d_2024_linear_21332632270343",
"hcaf_d_2028_linear_31332632270608",
"hcaf_d_2032_linear_41332632270847",
"hcaf_d_2036_linear_51332632271080",
"hcaf_d_2040_linear_61332632271334",
"hcaf_d_2044_linear_71332632271560",
"hcaf_d_2050"
};
final String [] envelopeOutputTable = {
"hspen",
"hspen_2016",
"hspen_2020",
"hspen_2024",
"hspen_2028",
"hspen_2032",
"hspen_2036",
"hspen_2040",
"hspen_2044",
"hspen_2050"
};
final String [] finalDistributionTable = {
"hspec_2012",
"hspec_2016",
"hspec_2020",
"hspec_2024",
"hspec_2028",
"hspec_2032",
"hspec_2036",
"hspec_2040",
"hspec_2044",
"hspec_2050"
};
/*
String [] csquareTable = {"hcaf_d","hcaf_d_2050"};
String [] envelopeOutputTable = {"hspen_micro_0","hspen_micro_2050"};
String [] finalDistributionTable = {"hspec_0","hspec_2050"};
*/
String preprocessedTable = "maxminlat_hspen";
String envelopeTable = "hspen";
String occurrenceCells = "occurrenceCells";
String commonkeycolumn = "csquarecode";
String probabilitycolumn = "probability";
int numberOfResources = 4;
String speciesCode = "Fis-10199";
String userName = "gianpaolo.coro";
String modelName = "HSPEN";
String generatorName = "AQUAMAPS_SUITABLE";
String qualityOperationName = "QUALITY_ANALYSIS";
String discrepancyOperationName = "DISCREPANCY_ANALYSIS";
String finalDistributionKeyColumn = "csquarecode";
for (int i =0;i<csquareTables.length;i++){
// Train
System.out.println("Generating-> "+finalDistributionTable[i]);
// Generate
GeneratorT.generate(GeneratorT.getGenerationConfig(numberOfResources, generatorName, envelopeOutputTable[i], preprocessedTable, speciesCode, userName, csquareTables[i], finalDistributionTable[i], configPath));
}
System.out.println("COMPUTATION FINISHED!");
}
}

2
src/org/gcube/dataanalysis/ecoengine/evaluation/bioclimate/InterpolateTables.java
View File

@ -268,7 +268,7 @@ public class InterpolateTables {
String databasePassword = "d4science2"; String databasePassword = "d4science2";
InterpolateTables interp = new InterpolateTables(configPath, persistencePath, databaseUrl, databaseUser, databasePassword); InterpolateTables interp = new InterpolateTables(configPath, persistencePath, databaseUrl, databaseUser, databasePassword);
interp.interpolate("hcaf_d", "hcaf_d_2050", 10, INTERPOLATIONFUNCTIONS.PARABOLIC, 2012, 2050); interp.interpolate("hcaf_d", "hcaf_d_2050", 10, INTERPOLATIONFUNCTIONS.LINEAR, 2012, 2050);
} }

1
src/org/gcube/dataanalysis/ecoengine/models/cores/aquamaps/AquamapsEnvelopeAlgorithm.java
View File

@ -194,6 +194,7 @@ public class AquamapsEnvelopeAlgorithm {
String IceQuery = String.format(dynamicSelectValues,IceField,species); String IceQuery = String.format(dynamicSelectValues,IceField,species);
String LanddistQuery = String.format(dynamicSelectValues,LanddistField,species); String LanddistQuery = String.format(dynamicSelectValues,LanddistField,species);
System.out.println(TemperatureQuery);
List<Object> tempvalues = DatabaseFactory.executeSQLQuery(TemperatureQuery, vreConnection); List<Object> tempvalues = DatabaseFactory.executeSQLQuery(TemperatureQuery, vreConnection);
List<Object> salinityvalues = DatabaseFactory.executeSQLQuery(SalinityQuery, vreConnection); List<Object> salinityvalues = DatabaseFactory.executeSQLQuery(SalinityQuery, vreConnection);
List<Object> primprodvalues = DatabaseFactory.executeSQLQuery(PrimProdQuery, vreConnection); List<Object> primprodvalues = DatabaseFactory.executeSQLQuery(PrimProdQuery, vreConnection);

2
src/org/gcube/dataanalysis/ecoengine/user/ModelerT.java
View File

@ -54,7 +54,7 @@ public class ModelerT implements Runnable {
AlgorithmConfiguration config = new AlgorithmConfiguration(); AlgorithmConfiguration config = new AlgorithmConfiguration();
config.setConfigPath(configPath); config.setConfigPath(configPath);
config.setPersistencePath("./"); config.setPersistencePath("./");
config.setNumberOfResources(2); config.setNumberOfResources(4);
config.setModel("HSPEN"); config.setModel("HSPEN");
config.setParam("OuputEnvelopeTable", outputTable); config.setParam("OuputEnvelopeTable", outputTable);