git-svn-id: https://svn.d4science.research-infrastructures.eu/gcube/trunk/data-analysis/EcologicalEngineWPSExtension@91861 82a268e6-3cf1-43bd-a215-b396298e98cf
This commit is contained in:
parent
bf4216a2c4
commit
883517d4d9
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@ -3,7 +3,7 @@ package org.gcube.dataanalysis.geo.wps.client;
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import java.math.BigInteger;
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import java.net.URL;
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import java.util.ArrayList;
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import java.util.Hashtable;
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import java.util.LinkedHashMap;
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import java.util.List;
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import net.opengis.wps.x100.CapabilitiesDocument;
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@ -16,6 +16,9 @@ import net.opengis.wps.x100.InputType;
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import net.opengis.wps.x100.OutputDescriptionType;
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import net.opengis.wps.x100.ProcessBriefType;
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import net.opengis.wps.x100.ProcessDescriptionType;
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import net.opengis.wps.x100.ResponseDocumentType;
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import net.opengis.wps.x100.StatusType;
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import net.opengis.wps.x100.impl.ExecuteResponseDocumentImpl;
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import org.apache.xmlbeans.XmlString;
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import org.gcube.contentmanagement.lexicalmatcher.utils.AnalysisLogger;
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@ -31,6 +34,7 @@ public class WPSClient {
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private String wpsServiceURL;
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private InputDescriptionType[] currentInputs;
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private OutputDescriptionType[] currentOutputs;
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public float wpsstatus = 0;
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public OutputDescriptionType[] getCurrentOutputs() {
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return currentOutputs;
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@ -41,14 +45,14 @@ public class WPSClient {
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}
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private List<StatisticalType> currentInputStatisticalTypes;
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private Hashtable<String, StatisticalType> currentOutputStatisticalTypes;
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private LinkedHashMap<String, StatisticalType> currentOutputStatisticalTypes;
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private ProcessDescriptionType currentProcessDescription;
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public Hashtable<String, StatisticalType> getCurrentOutputStatisticalTypes() {
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public LinkedHashMap<String, StatisticalType> getCurrentOutputStatisticalTypes() {
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return currentOutputStatisticalTypes;
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}
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public void setCurrentOutputStatisticalTypes(Hashtable<String, StatisticalType> currentOutputStatisticalTypes) {
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public void setCurrentOutputStatisticalTypes(LinkedHashMap<String, StatisticalType> currentOutputStatisticalTypes) {
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this.currentOutputStatisticalTypes = currentOutputStatisticalTypes;
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}
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@ -141,7 +145,7 @@ public class WPSClient {
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AnalysisLogger.getLogger().debug("WPSClient->Fetching Outputs");
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OutputDescriptionType[] outputList = processDescription.getProcessOutputs().getOutputArray();
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currentOutputStatisticalTypes = new Hashtable<String, StatisticalType>();
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currentOutputStatisticalTypes = new LinkedHashMap<String, StatisticalType>();
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currentOutputs = outputList;
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for (OutputDescriptionType output : outputList) {
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AnalysisLogger.getLogger().debug("WPSClient->Output id:" + output.getIdentifier().getStringValue());
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@ -222,18 +226,77 @@ public class WPSClient {
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ExecuteDocument execute = executeBuilder.getExecute();
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execute.getExecute().setService("WPS");
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// System.out.println("RESPONSE FORM:"+execute.getExecute().getResponseForm());
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WPSClientSession wpsClient = WPSClientSession.getInstance();
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try {
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wpsClient.connect(wpsServiceURL);
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AnalysisLogger.getLogger().debug("Sending:\n" + execute);
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if (execute.getExecute().getResponseForm() != null) {
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ResponseDocumentType documentType = execute.getExecute().getResponseForm().getResponseDocument();
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documentType.setStoreExecuteResponse(true);
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documentType.setStatus(true);
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documentType.setLineage(false);
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execute.getExecute().getResponseForm().setResponseDocument(documentType);
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}
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boolean end = false;
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Object responseObject = wpsClient.execute(wpsServiceURL, execute);
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AnalysisLogger.getLogger().debug("Response:\n" + responseObject);
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if (responseObject instanceof ExecuteResponseDocument) {
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ExecuteResponseDocument response = (ExecuteResponseDocument) responseObject;
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return response.getExecuteResponse().getProcessOutputs();
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} else
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String statusLocation = null;
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if (responseObject != null)
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statusLocation = ((ExecuteResponseDocumentImpl) responseObject).getExecuteResponse().getStatusLocation();
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else
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throw new Exception("" + responseObject);
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while (!end) {
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// AnalysisLogger.getLogger().debug("Response:\n" + responseObject);
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if (responseObject instanceof ExecuteResponseDocumentImpl) {
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// AnalysisLogger.getLogger().debug("ResponseImpl:\n" + responseObject);
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StatusType statusType = ((ExecuteResponseDocumentImpl) responseObject).getExecuteResponse().getStatus();
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int status = statusType.getProcessStarted() == null ? -1 : statusType.getProcessStarted().getPercentCompleted();
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String failure = statusType.getProcessFailed() == null ? null : statusType.getProcessFailed().getExceptionReport().toString();
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String accepted = statusType.getProcessAccepted() == null ? null : statusType.getProcessAccepted();
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String success = statusType.getProcessSucceeded() == null ? null : statusType.getProcessSucceeded();
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String paused = statusType.getProcessPaused() == null ? null : statusType.getProcessPaused().getStringValue();
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if ((failure != null && failure.length() > 0) || (paused != null && paused.length() > 0)) {
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AnalysisLogger.getLogger().debug("WPS FAILURE: " + failure + " OR PAUSED: " + paused);
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wpsstatus = 100f;
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throw new Exception(failure);
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} else if (accepted != null && accepted.length() > 0) {
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AnalysisLogger.getLogger().debug("WPS ACCEPTED");
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wpsstatus = 0f;
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} else if (success != null && success.length() > 0) {
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AnalysisLogger.getLogger().debug("WPS SUCCESS");
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wpsstatus = 100f;
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end = true;
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} else if (status >= 0) {
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Float statusd = (float) status;
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try {
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statusd = Float.parseFloat(statusType.getProcessStarted().getStringValue());
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} catch (Exception e) {
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}
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AnalysisLogger.getLogger().debug("WPS STATUS:" + statusd);
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wpsstatus = statusd;
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}
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Thread.sleep(2000);
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if (statusLocation!=null && statusLocation.length()>0)
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responseObject = wpsClient.executeViaGET(statusLocation, "");
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else
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if (wpsstatus!=100)
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throw new Exception("Cannot retrieve process status");
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// AnalysisLogger.getLogger().debug("ResponseOBJ:\n" + responseObject);
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} else
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throw new Exception("" + responseObject);
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}
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AnalysisLogger.getLogger().debug("Response:\n" + responseObject);
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wpsstatus = 100f;
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return ((ExecuteResponseDocument) responseObject).getExecuteResponse().getProcessOutputs();
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} catch (Exception e) {
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e.printStackTrace();
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throw e;
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@ -244,16 +307,19 @@ public class WPSClient {
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public static void main(String[] args) throws Exception {
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AnalysisLogger.setLogger("./cfg/ALog.properties");
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WPSClient client = new WPSClient("http://wps01.i-marine.d4science.org/wps/WebProcessingService");
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// WPSClient client = new WPSClient("http://geoprocessing.demo.52north.org:8080/wps/WebProcessingService");
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// WPSClient client = new WPSClient("http://wps01.i-marine.d4science.org/wps/WebProcessingService");
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WPSClient client = new WPSClient("http://geoprocessing.demo.52north.org:8080/wps/WebProcessingService");
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client.requestGetCapabilities();
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// client.describeProcess("com.terradue.wps_hadoop.processes.examples.async.Async", new URL("file:///C:/Users/coro/Desktop/WorkFolder/Workspace/EcologicalEngineWPSExtension/cfg/test.xml"));
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// client.describeProcess("org.n52.wps.extension.GetFuelPriceProcess");
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// client.describeProcess("org.n52.wps.server.algorithm.test.DummyTestClass");
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// client.describeProcess("org.n52.wps.server.algorithm.coordinatetransform.CoordinateTransformAlgorithm");
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// client.describeProcess("org.n52.wps.extension.GetFuelPriceProcess");
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client.describeProcess("com.terradue.wps_hadoop.processes.examples.async.Async");
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// client.describeProcess("com.terradue.wps_hadoop.processes.examples.async.Async");
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client.describeProcess("org.n52.wps.server.algorithm.SimpleBufferAlgorithm");
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}
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public static int calculateBBDimensions(String bbstring) {
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@ -281,11 +347,11 @@ public class WPSClient {
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// bboxInput=46,102,47,103,urn:ogc:def:crs:EPSG:6.6:4326,2
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String[] bbinput = BBstring.split(",");
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int dimensions = calculateBBDimensions(BBstring);
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List lc = new ArrayList<String>();
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List<String> lc = new ArrayList<String>();
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for (int i = 0; i < dimensions / 2; i++) {
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lc.add(bbinput[i]);
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}
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List uc = new ArrayList<String>();
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List<String> uc = new ArrayList<String>();
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for (int i = dimensions / 2; i < dimensions; i++) {
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uc.add(bbinput[i]);
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}
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@ -293,7 +359,7 @@ public class WPSClient {
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bbtype.setLowerCorner(lc);
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bbtype.setUpperCorner(uc);
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int crsidx = bbinput[dimensions].indexOf("crs:");
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// int crsidx = bbinput[dimensions].indexOf("crs:");
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String crs = bbinput[dimensions];
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/*
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* if (crsidx>=0) crs = bbinput[dimensions].substring(crsidx+4);
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@ -320,7 +386,7 @@ public class WPSClient {
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if (nChildren == 0) {
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String text = node.getNodeValue();
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if (text.startsWith("https:")||text.startsWith("http:") || text.startsWith("ftp:") || text.startsWith("smp:")|| text.startsWith("file:"))
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if (text!= null && (text.startsWith("https:") || text.startsWith("http:") || text.startsWith("ftp:") || text.startsWith("smp:") || text.startsWith("file:")))
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urls.add(text.trim());
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} else {
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for (int i = 0; i < nChildren; i++) {
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@ -16,8 +16,10 @@ import org.gcube.dataanalysis.geo.wps.interfaces.WPSProcess;
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public class DynamicWPSTransducerer implements DynamicTransducer{
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public Map<String, Transducerer> getTransducers(AlgorithmConfiguration config) {
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if (transducerersP!=null && !isTooMuchTime())
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return transducerersP;
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Map<String, Transducerer> transducerers = new LinkedHashMap<String,Transducerer>();
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//get the list of endpoints from the IS
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List<String> wpsendpoints = getWPSendpoints(config);
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@ -32,27 +34,48 @@ public class DynamicWPSTransducerer implements DynamicTransducer{
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WPSProcess process = new WPSProcess(wpsendpoint, processInfo.getIdentifier().getStringValue());
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process.setConfiguration(config);
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transducerers.put(processInfo.getIdentifier().getStringValue(),process);
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// break;
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}
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}
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} catch (Exception e) {
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e.printStackTrace();
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AnalysisLogger.getLogger().debug("Error in retrieving information by WPS Server: "+e.getLocalizedMessage());
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}
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if (transducerers.size()>0)
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transducerersP=transducerers;
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return transducerers;
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}
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static Map<String, Transducerer> transducerersP = null;
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static long t0 = System.currentTimeMillis();
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static long maxtime = 60*60*1000; //1h
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public static boolean isTooMuchTime(){
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if (System.currentTimeMillis()-t0>maxtime){
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t0 = System.currentTimeMillis();
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return true;
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}
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else
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return false;
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}
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//gets the list of endpoints from the IS
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public static List<String> getWPSendpoints(AlgorithmConfiguration config) {
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List<String> wps = new ArrayList<String>();
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AnalysisLogger.setLogger(config.getConfigPath()+AlgorithmConfiguration.defaultLoggerFile);
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// wps.add("http://wps01.i-marine.d4science.org/wps/WebProcessingService");
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AnalysisLogger.getLogger().debug("WPS: searching for wps servers in the scope: "+config.getGcubeScope());
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wps = org.gcube.dataanalysis.executor.util.IfraRetrieval.retrieveAddresses("WPS", config.getGcubeScope(),"StatisticalManager");
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if (wps!=null && wps.size()>0)
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if (wps!=null && wps.size()>0){
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AnalysisLogger.getLogger().debug("WPS: found "+wps.size()+" wps instances");
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}
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else
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AnalysisLogger.getLogger().debug("WPS: found NO wps instances");
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return wps;
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}
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@ -2,9 +2,9 @@ package org.gcube.dataanalysis.geo.wps.interfaces;
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import java.util.HashMap;
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import java.util.Hashtable;
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import java.util.LinkedHashMap;
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import java.util.List;
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import javax.xml.namespace.QName;
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import java.util.Map;
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import net.opengis.wps.x100.ComplexDataType;
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import net.opengis.wps.x100.ExecuteResponseDocument.ExecuteResponse.ProcessOutputs;
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@ -14,17 +14,16 @@ import net.opengis.wps.x100.OutputDescriptionType;
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import net.opengis.wps.x100.ProcessDescriptionType;
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import net.opengis.wps.x100.SupportedComplexDataInputType;
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import org.apache.xmlbeans.XmlObject;
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import org.gcube.contentmanagement.lexicalmatcher.utils.AnalysisLogger;
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import org.gcube.dataanalysis.ecoengine.configuration.AlgorithmConfiguration;
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import org.gcube.dataanalysis.ecoengine.configuration.INFRASTRUCTURE;
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import org.gcube.dataanalysis.ecoengine.datatypes.PrimitiveType;
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import org.gcube.dataanalysis.ecoengine.datatypes.PrimitiveTypesList;
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import org.gcube.dataanalysis.ecoengine.datatypes.StatisticalType;
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import org.gcube.dataanalysis.ecoengine.datatypes.enumtypes.PrimitiveTypes;
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import org.gcube.dataanalysis.ecoengine.interfaces.Transducerer;
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import org.gcube.dataanalysis.ecoengine.utils.ResourceFactory;
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import org.gcube.dataanalysis.geo.wps.client.WPSClient;
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import org.gcube.dataanalysis.geo.wps.factory.DynamicWPSTransducerer;
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public class WPSProcess implements Transducerer {
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@ -33,11 +32,14 @@ public class WPSProcess implements Transducerer {
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public String title;
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public String processAbstract;
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private List<StatisticalType> inputTypes;
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private Hashtable<String, StatisticalType> outputTypes;
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private LinkedHashMap<String, StatisticalType> outputTypes;
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private InputDescriptionType[] wpsInputs;
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private OutputDescriptionType[] wpsOutputs;
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private ProcessDescriptionType processDescription;
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private WPSClient currentProcess;
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public static Map<String,WPSClient> inputsCache;
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protected ResourceFactory resourceManager;
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private AlgorithmConfiguration config;
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float status = 0;
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@ -86,6 +88,7 @@ public class WPSProcess implements Transducerer {
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}
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// Submit the execution
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WPSClient client = new WPSClient(wpsurl);
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currentProcess=client;
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AnalysisLogger.getLogger().debug("Starting Process");
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ProcessOutputs outs = client.executeProcess(executeBuilder, processDescription);
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// retrieve the output objs
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@ -114,7 +117,10 @@ public class WPSProcess implements Transducerer {
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AnalysisLogger.getLogger().debug("Assigning value: " + value + " to output named: " + outputID);
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}
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}
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else
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//remove the element name, which is not useful
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outputTypes.remove(outputID);
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ComplexDataType cdt = out.getData().getComplexData();
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List<String> urls = WPSClient.retrieveURLsFromWPSResponse(cdt);
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@ -140,9 +146,19 @@ public class WPSProcess implements Transducerer {
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}
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public void init() throws Exception {
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// here we build the WPS process by means of the client
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WPSClient wpsclient = new WPSClient(wpsurl);
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wpsclient.describeProcess(processid);
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WPSClient wpsclient = null;
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if (inputsCache!=null)
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wpsclient = inputsCache.get(processid);
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else
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inputsCache=new HashMap<String, WPSClient>();
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if (wpsclient ==null)
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{
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// here we build the WPS process by means of the client
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wpsclient = new WPSClient(wpsurl);
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wpsclient.describeProcess(processid);
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inputsCache.put(processid, wpsclient);
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}
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inputTypes = wpsclient.getCurrentInputStatisticalTypes();
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outputTypes = wpsclient.getCurrentOutputStatisticalTypes();
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wpsInputs = wpsclient.getCurrentInputs();
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@ -151,6 +167,12 @@ public class WPSProcess implements Transducerer {
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processAbstract = wpsclient.getCurrentProcessAbstract();
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processDescription = wpsclient.getProcessDescription();
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if ( DynamicWPSTransducerer.isTooMuchTime()){
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inputsCache=null;
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System.gc();
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}
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}
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public String getDescription() {
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@ -182,7 +204,12 @@ public class WPSProcess implements Transducerer {
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}
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public float getStatus() {
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return status;
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if (status ==100f)
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return status;
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else if (currentProcess!=null)
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return Math.min(currentProcess.wpsstatus, 90f);
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else
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return status;
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}
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public void setConfiguration(AlgorithmConfiguration config) {
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@ -26,7 +26,7 @@ public class WPS2SM {
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Abstract = buildParameterDescription(Abstract, null, null, minOcc, maxOcc, null);
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if ((maxOcc == 1)||(maxOcc<0)||(maxOcc == 0))
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converted = new PrimitiveType(String.class.getName(), null, PrimitiveTypes.STRING, title, Abstract, "");
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converted = new PrimitiveType(String.class.getName(), null, PrimitiveTypes.STRING, title, Abstract, " ",true);
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else
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converted = new PrimitiveTypesList(String.class.getName(), PrimitiveTypes.STRING, title, Abstract, true);
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@ -39,9 +39,11 @@ public class WPS2SM {
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String guessedType = guessWPSLiteralType(type);
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AnalysisLogger.getLogger().debug("Guessed type: " + guessedType);
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// rebuild Abstract
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if ((defaultValue==null || defaultValue.trim().length()==0) && (guessedType.equals(String.class.getName())))
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defaultValue=" ";
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Abstract = buildParameterDescription(Abstract, null, uoms, minOcc, maxOcc, defaultValue);
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if ((maxOcc == 1)||(maxOcc<0)||(maxOcc == 0))
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converted = new PrimitiveType(guessedType, null, PrimitiveTypes.STRING, title, Abstract, defaultValue);
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converted = new PrimitiveType(guessedType, null, PrimitiveTypes.STRING, title, Abstract, defaultValue,true);
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else
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converted = new PrimitiveTypesList(guessedType, PrimitiveTypes.STRING, title, Abstract, true);
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return converted;
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@ -64,7 +66,7 @@ public class WPS2SM {
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// rebuild Abstract
|
||||
Abstract = buildParameterDescription(Abstract, maxMegaBytes, null, minOcc, maxOcc, null);
|
||||
if ((maxOcc == 1)||(maxOcc<0)||(maxOcc == 0))
|
||||
converted = new PrimitiveType(String.class.getName(), null, PrimitiveTypes.STRING, title, Abstract);
|
||||
converted = new PrimitiveType(String.class.getName(), null, PrimitiveTypes.STRING, title, Abstract," ",true);
|
||||
else
|
||||
converted = new PrimitiveTypesList(String.class.getName(), PrimitiveTypes.STRING, title, Abstract, true);
|
||||
|
||||
|
|
@ -82,7 +84,7 @@ public class WPS2SM {
|
|||
rangeOccs = 1;
|
||||
|
||||
// default
|
||||
StatisticalType converted = new PrimitiveType(String.class.getName(), null, PrimitiveTypes.STRING, id, Abstract);
|
||||
StatisticalType converted = new PrimitiveType(String.class.getName(), null, PrimitiveTypes.STRING, id, Abstract," ",true);
|
||||
if (rangeOccs > 1)
|
||||
converted = new PrimitiveTypesList(String.class.getName(), PrimitiveTypes.STRING, id, Abstract, true);
|
||||
|
||||
|
|
@ -119,7 +121,7 @@ public class WPS2SM {
|
|||
String Abstract = wpsType.getAbstract()!=null?wpsType.getAbstract().getStringValue():"";
|
||||
|
||||
// default
|
||||
StatisticalType converted = new PrimitiveType(String.class.getName(), null, PrimitiveTypes.STRING, id, Abstract);
|
||||
StatisticalType converted = new PrimitiveType(String.class.getName(), null, PrimitiveTypes.STRING, id, Abstract," ",true);
|
||||
|
||||
AnalysisLogger.getLogger().debug("Conversion to SM Type->Output id:" + id);
|
||||
AnalysisLogger.getLogger().debug("Conversion to SM Type->Abstract:" + Abstract);
|
||||
|
|
|
|||
|
|
@ -27,7 +27,7 @@ public class RegressionTerradueWPSProcess {
|
|||
|
||||
AlgorithmConfiguration config = Regressor.getConfig();
|
||||
|
||||
config.setParam("secondsDelay", "1");
|
||||
config.setParam("secondsDelay", "30");
|
||||
|
||||
|
||||
return config;
|
||||
|
|
|
|||
Loading…
Reference in New Issue