74 lines
3.1 KiB
Java
74 lines
3.1 KiB
Java
package org.gcube.dataanalysis.executor.tests;
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import java.util.List;
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import org.gcube.contentmanagement.lexicalmatcher.utils.AnalysisLogger;
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import org.gcube.dataanalysis.ecoengine.configuration.AlgorithmConfiguration;
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import org.gcube.dataanalysis.ecoengine.datatypes.StatisticalType;
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import org.gcube.dataanalysis.ecoengine.interfaces.ComputationalAgent;
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import org.gcube.dataanalysis.ecoengine.processing.factories.GeneratorsFactory;
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import org.gcube.dataanalysis.executor.generators.D4ScienceDistributedProcessing;
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public class RegressionTestFAOMSY {
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/**
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* example of parallel processing on a single machine the procedure will generate a new table for a distribution on suitable species
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*
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*/
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public static AlgorithmConfiguration getConfig() {
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AlgorithmConfiguration config = new AlgorithmConfiguration();
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config.setConfigPath("./cfg/");
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config.setPersistencePath("./");
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config.setParam("DatabaseUserName","utente");
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config.setParam("DatabasePassword","d4science");
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config.setParam("DatabaseURL","jdbc:postgresql://dbtest.research-infrastructures.eu/testdb");
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config.setParam("DatabaseDriver","org.postgresql.Driver");
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AnalysisLogger.setLogger(config.getConfigPath()+AlgorithmConfiguration.defaultLoggerFile);
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return config;
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}
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public static void main(String[] args) throws Exception {
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System.out.println("TEST 1");
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List<ComputationalAgent> generators = GeneratorsFactory.getGenerators(testCMSY());
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generators.get(0).init();
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CustomRegressor.process(generators.get(0));
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StatisticalType output = generators.get(0).getOutput();
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AnalysisLogger.getLogger().debug("Output description: "+output.getDescription());
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generators = null;
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}
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private static AlgorithmConfiguration testCMSY() {
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AlgorithmConfiguration config = getConfig();
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config.setNumberOfResources(5);
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config.setModel("FAOMSY");
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config.setParam("UserName", "gianpaolo.coro");
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config.setGcubeScope("/gcube/devsec");
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// config.setGcubeScope("/d4science.research-infrastructures.eu");
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config.setParam("ServiceUserName", "gianpaolo.coro");
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D4ScienceDistributedProcessing.maxMessagesAllowedPerJob=2;
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// http://goo.gl/FV95FP //1000 sp
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config.setParam("StocksFile","http://goo.gl/dQKq75"); // 2 species
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// config.setParam("StocksFile","http://goo.gl/n1bKOg"); // 1 species non processed type
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// config.setParam("StocksFile","https://dl.dropboxusercontent.com/u/12809149/FAOMSY_Short1.csv");
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// config.setParam("StocksFile","https://dl.dropboxusercontent.com/u/12809149/FAOMSY_Short2.csv");
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//config.setParam("StocksFile","https://dl.dropboxusercontent.com/u/12809149/FAOMSY_Longtest.csv");
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// config.setParam("StocksFile","https://dl.dropboxusercontent.com/u/12809149/FAOMSY_1000sptest.csv");
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// config.setParam("StocksFile","http://goo.gl/B09ZL0"); //50species
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//config.setParam("IDsFile","http://goo.gl/9rg3qK");
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// config.setParam("StocksFile","http://goo.gl/Mp2ZLY");
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// config.setParam("StocksFile","http://goo.gl/btuIIe");
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// config.setParam("SelectedStock","Pan_bor_1");
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// config.setParam("SelectedStock","HLH_M08");
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return config;
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}
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}
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