70 lines
3.8 KiB
Java
70 lines
3.8 KiB
Java
package org.gcube.dataanalysis.executor.tests;
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import java.util.List;
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import org.gcube.dataanalysis.ecoengine.configuration.AlgorithmConfiguration;
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import org.gcube.dataanalysis.ecoengine.datatypes.StatisticalType;
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import org.gcube.dataanalysis.ecoengine.interfaces.ComputationalAgent;
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import org.gcube.dataanalysis.ecoengine.processing.factories.TransducerersFactory;
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import org.gcube.dataanalysis.executor.nodes.transducers.bionym.BionymFlexibleWorkflowTransducer;
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import org.gcube.dataanalysis.executor.nodes.transducers.bionym.BionymLocalTransducer;
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import org.gcube.dataanalysis.executor.nodes.transducers.bionym.utils.YasmeenGlobalParameters;
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public class TestBiOnymLocal {
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public static void main(String[] args) throws Exception {
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// Generate
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AlgorithmConfiguration config = new AlgorithmConfiguration();
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config.setConfigPath("./cfg/");
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config.setParam("DatabaseUserName","utente");
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config.setParam("DatabasePassword","d4science");
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config.setParam("DatabaseURL","jdbc:postgresql://statistical-manager.d.d4science.research-infrastructures.eu/testdb");
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config.setParam(YasmeenGlobalParameters.parserNameParam,YasmeenGlobalParameters.BuiltinParsers.SIMPLE.name());
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config.setParam(YasmeenGlobalParameters.taxaAuthorityFileParam,YasmeenGlobalParameters.BuiltinDataSources.FISHBASE.name());
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config.setParam(YasmeenGlobalParameters.activatePreParsingProcessing,"true");
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config.setParam(YasmeenGlobalParameters.useStemmedGenusAndSpecies,"false");
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config.setParam(YasmeenGlobalParameters.performanceParam,YasmeenGlobalParameters.Performance.HIGH_SPEED.name());
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config.setParam(BionymFlexibleWorkflowTransducer.matcherParamPrefix+"_"+3,YasmeenGlobalParameters.BuiltinMatchers.LEVENSHTEIN.name());
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config.setParam(BionymFlexibleWorkflowTransducer.thresholdParamPrefix+"_"+3,"0.4");
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config.setParam(BionymFlexibleWorkflowTransducer.maxresultsParamPrefix+"_"+3,"10");
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config.setParam(BionymFlexibleWorkflowTransducer.matcherParamPrefix+"_"+1,YasmeenGlobalParameters.BuiltinMatchers.GSAy.name());
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config.setParam(BionymFlexibleWorkflowTransducer.thresholdParamPrefix+"_"+1,"0.6");
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config.setParam(BionymFlexibleWorkflowTransducer.maxresultsParamPrefix+"_"+1,"10");
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config.setParam(BionymFlexibleWorkflowTransducer.matcherParamPrefix+"_"+2,YasmeenGlobalParameters.BuiltinMatchers.FUZZYMATCH.name());
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config.setParam(BionymFlexibleWorkflowTransducer.thresholdParamPrefix+"_"+2,"0.6");
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config.setParam(BionymFlexibleWorkflowTransducer.maxresultsParamPrefix+"_"+2,"10");
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/*
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config.setParam(BionymFlexibleWorkflowTransducer.matcherParamPrefix+"_"+3,YasmeenGlobalParameters.BuiltinMatchers.LEVENSHTEIN.name());
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config.setParam(BionymFlexibleWorkflowTransducer.thresholdParamPrefix+"_"+3,"0.4");
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config.setParam(BionymFlexibleWorkflowTransducer.maxresultsParamPrefix+"_"+3,"10");
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config.setParam(BionymFlexibleWorkflowTransducer.matcherParamPrefix+"_"+4,YasmeenGlobalParameters.BuiltinMatchers.TRIGRAM.name());
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config.setParam(BionymFlexibleWorkflowTransducer.thresholdParamPrefix+"_"+4,"0.4");
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config.setParam(BionymFlexibleWorkflowTransducer.maxresultsParamPrefix+"_"+4,"10");
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*/
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config.setAgent("BIONYM_LOCAL");
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config.setPersistencePath("./");
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config.setGcubeScope( "/gcube");
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config.setParam("ServiceUserName", "gianpaolo.coro");
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config.setParam("DatabaseDriver", "org.postgresql.Driver");
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config.setParam(BionymLocalTransducer.speciesName, "Gadus morhua (Linnaeus, 1758)");
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List<ComputationalAgent> transducers = TransducerersFactory.getTransducerers(config);
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ComputationalAgent transducer =transducers.get(0);
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transducer.init();
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List<StatisticalType> types = transducer.getInputParameters();
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// System.out.println(types);
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CustomRegressor.process(transducer);
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}
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}
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