80 lines
3.2 KiB
Java
80 lines
3.2 KiB
Java
package org.gcube.dataanalysis.executor.tests;
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import org.gcube.dataanalysis.ecoengine.configuration.AlgorithmConfiguration;
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import org.gcube.dataanalysis.executor.generators.D4ScienceDistributedProcessing;
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import org.gcube.dataanalysis.executor.nodes.transducers.bionym.BionymWorkflow;
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import org.gcube.dataanalysis.executor.nodes.transducers.bionym.CometMatcherManager;
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import org.gcube.dataanalysis.executor.nodes.transducers.bionym.EVBPreprocessing;
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public class TestBiOnym1_0_0 {
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public static void main(String[] args) throws Exception {
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// Generate
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AlgorithmConfiguration config = new AlgorithmConfiguration();
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config.setConfigPath("./cfg/");
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config.setParam(BionymWorkflow.destinationTableParam, "taxamatchoutput");
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config.setParam(BionymWorkflow.destinationTableLable, "taxamatchoutputlabel");
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config.setParam(BionymWorkflow.originTableParam, "taxamatchinput");
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config.setParam(BionymWorkflow.rawnamesColumnParam, "rawstrings");
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config.setParam(BionymWorkflow.parserParam, CometMatcherManager.Parsers.SIMPLE.name());
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config.setParam(BionymWorkflow.referenceParam, CometMatcherManager.Reference.ASFIS.name());
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config.setParam(BionymWorkflow.soundexweightParam, CometMatcherManager.Weights.EDIT_DISTANCE.name());
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config.setParam(BionymWorkflow.doPreprocessParam , EVBPreprocessing.Preprocessors.EXPERT_RULES.name());
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config.setParam(BionymWorkflow.maxMatchesParam , "10");
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config.setAgent("BIONYM");
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config.setPersistencePath("./");
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config.setGcubeScope( "/gcube");
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// config.setGcubeScope( "/d4science.research-infrastructures.eu");
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config.setParam("ServiceUserName", "gianpaolo.coro");
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config.setParam("DatabaseUserName","utente");
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config.setParam("DatabasePassword","d4science");
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// config.setParam("DatabaseURL","jdbc:postgresql://dbtest.research-infrastructures.eu/testdb");
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config.setParam("DatabaseURL","jdbc:postgresql://statistical-manager.d.d4science.research-infrastructures.eu/testdb");
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// config.setParam("DatabaseUserName", "gcube");
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// config.setParam("DatabasePassword", "d4science2");
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// config.setParam("DatabaseURL", "jdbc:postgresql://146.48.87.169/testdb");
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config.setParam("DatabaseDriver", "org.postgresql.Driver");
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generate(config);
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}
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public static void generate(AlgorithmConfiguration config) throws Exception {
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D4ScienceDistributedProcessing generator = new D4ScienceDistributedProcessing(config);
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generator.init();
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if (generator != null) {
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long t0 = System.currentTimeMillis();
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TestGenerator tgs = new TestGenerator(generator);
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Thread t = new Thread(tgs);
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t.start();
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while (generator.getStatus() < 100) {
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String resLoad = generator.getResourceLoad();
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String ress = generator.getResources();
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String species = generator.getLoad();
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System.out.println("LOAD: " + resLoad);
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System.out.println("RESOURCES: " + ress);
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System.out.println("SPECIES: " + species);
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System.out.println("STATUS: " + generator.getStatus());
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Thread.sleep(2000);
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}
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System.out.println("FINAL STATUS: " + generator.getStatus()+ " ELAPSED "+(System.currentTimeMillis()-t0));
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}
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else
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System.out.println("Generator Algorithm Not Supported");
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// generator.generate();
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// }
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}
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}
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