package org.gcube.dataanalysis.executor.tests; import java.util.List; import org.gcube.contentmanagement.lexicalmatcher.utils.AnalysisLogger; import org.gcube.dataanalysis.ecoengine.configuration.AlgorithmConfiguration; import org.gcube.dataanalysis.ecoengine.datatypes.StatisticalType; import org.gcube.dataanalysis.ecoengine.interfaces.ComputationalAgent; import org.gcube.dataanalysis.ecoengine.processing.factories.GeneratorsFactory; import org.gcube.dataanalysis.executor.generators.D4ScienceDistributedProcessing; public class RegressionTestFAOMSY { /** * example of parallel processing on a single machine the procedure will generate a new table for a distribution on suitable species * */ public static AlgorithmConfiguration getConfig() { AlgorithmConfiguration config = new AlgorithmConfiguration(); config.setConfigPath("./cfg/"); config.setPersistencePath("./"); config.setParam("DatabaseUserName","utente"); config.setParam("DatabasePassword","d4science"); config.setParam("DatabaseURL","jdbc:postgresql://dbtest.research-infrastructures.eu/testdb"); config.setParam("DatabaseDriver","org.postgresql.Driver"); AnalysisLogger.setLogger(config.getConfigPath()+AlgorithmConfiguration.defaultLoggerFile); return config; } public static void main(String[] args) throws Exception { System.out.println("TEST 1"); List generators = GeneratorsFactory.getGenerators(testCMSY()); generators.get(0).init(); CustomRegressor.process(generators.get(0)); StatisticalType output = generators.get(0).getOutput(); AnalysisLogger.getLogger().debug("Output description: "+output.getDescription()); generators = null; } private static AlgorithmConfiguration testCMSY() { AlgorithmConfiguration config = getConfig(); config.setNumberOfResources(5); config.setModel("FAOMSY"); config.setParam("UserName", "gianpaolo.coro"); config.setGcubeScope("/gcube/devsec"); // config.setGcubeScope("/d4science.research-infrastructures.eu"); config.setParam("ServiceUserName", "gianpaolo.coro"); D4ScienceDistributedProcessing.maxMessagesAllowedPerJob=2; // http://goo.gl/FV95FP //1000 sp config.setParam("StocksFile","http://goo.gl/dQKq75"); // 2 species // config.setParam("StocksFile","http://goo.gl/n1bKOg"); // 1 species non processed type // config.setParam("StocksFile","https://dl.dropboxusercontent.com/u/12809149/FAOMSY_Short1.csv"); // config.setParam("StocksFile","https://dl.dropboxusercontent.com/u/12809149/FAOMSY_Short2.csv"); //config.setParam("StocksFile","https://dl.dropboxusercontent.com/u/12809149/FAOMSY_Longtest.csv"); // config.setParam("StocksFile","https://dl.dropboxusercontent.com/u/12809149/FAOMSY_1000sptest.csv"); // config.setParam("StocksFile","http://goo.gl/B09ZL0"); //50species //config.setParam("IDsFile","http://goo.gl/9rg3qK"); // config.setParam("StocksFile","http://goo.gl/Mp2ZLY"); // config.setParam("StocksFile","http://goo.gl/btuIIe"); // config.setParam("SelectedStock","Pan_bor_1"); // config.setParam("SelectedStock","HLH_M08"); return config; } }