diff --git a/src/main/resources/WPSGWTemplate.xml b/src/main/resources/WPSGWTemplate.xml new file mode 100644 index 0000000..0c3a449 --- /dev/null +++ b/src/main/resources/WPSGWTemplate.xml @@ -0,0 +1,67 @@ + + + org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_WORKER + + + ConfigurationFile + + #ConfigurationFile# + + + + DeleteTemporaryFiles + + #DeleteTemporaryFiles# + + + + IsDuplicate + + #IsDuplicate# + + + + Session + + #Session# + + + + AlgorithmClass + + #AlgorithmClass# + + + + NumberOfLeftElementsToProcess + + #NumberOfLeftElementsToProcess# + + + + LeftSetStartIndex + + #LeftSetStartIndex# + + + + RightSetStartIndex + + #RightSetStartIndex# + + + + NumberOfRightElementsToProcess + + #NumberOfRightElementsToProcess# + + + + + + + non_deterministic_output + + + + \ No newline at end of file diff --git a/src/main/resources/WPSGWTemplate2.xml b/src/main/resources/WPSGWTemplate2.xml new file mode 100644 index 0000000..e3043d0 --- /dev/null +++ b/src/main/resources/WPSGWTemplate2.xml @@ -0,0 +1,58 @@ + + + org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN + + + OccurrencePointsTable + + k,subject_medicine,subject_doajhealth_sciences,subject_doajnursing,subject_nursing,subject_infarto_del_miocrdio,subject_myocardial_infarction,subject_patient_education_as_topic,subject_estudos_de_validao,subject_infarto_do_miocrdio,subject_learning,subject_aprendizagem,subject_estudios_de_validacin,subject_aprendizaje,subject_educao_de_pacientes_como_assunto,subject_educacin_del_paciente_como_asunto,subject_validation_studies,subject_nursing_diagnosis,subject_diagnstico_de_enfermagem,subject_atencin_perioperativa,subject_diagnostico_de_enfermera,subject_perioperative_care,subject_assistncia_perioperatria,subject_cirurgia_torcica,subject_ciruga_torcica,subject_thoracic_surgery,subject_burns,subject_queimaduras,subject_quemaduras,subject_processos_de_enfermagem,subject_nursing_process,subject_procesos_de_enfermera,subject_diagnstico_de_enfermera,subject_doajtechnology_general,subject_technology,subject_doajtechnology_and_engineering,subject_laboratory,subject_weblab,subject_labview,subject_remote,subject_technology_general,subject_doajindustrial_engineering,subject_industrial_engineering_management_engineering,subject_diffraction,subject_doajmedicine_general,subject_doajinternal_medicine,subject_spine,subject_cisticercose,subject_coluna,subject_cysticercosis,subject_medicine_general,subject_magnetic_resonance_imaging,subject_ressonncia_magntica,subject_crebro,subject_brain,subject_medical_physics_medical_radiology_nuclear_medicine,subject_wound_nealing,subject_curativos,subject_cicatrizacion_de_heridas,subject_vendajes,subject_heridas_e_traumatismos,subject_bandages,subject_quemadura,subject_ferimentos_e_leses,subject_cicatrizao_de_feridas,subject_wounds_and_injuries,subject_royal_projects,subject_thai_politics,subject_doajgeneral_works,subject_nordthailand,subject_sufficiency_economy,subject_northern_thailand,subject_general_works,subject_lua_people,subject_doajmultidisciplinary,subject_thailndische_politik,subject_coronary_disease,subject_educao_em_sade,subject_doena_das_coronrias,subject_educacin_en_salud,subject_enfermedad_coronaria,subject_health_education,subject_dolor,subject_etnografia,subject_etnografa,subject_ethnography,subject_data_collection,subject_coleta_de_dados,subject_ciruga_cardiaca,subject_recoleccin_de_datos,subject_cirurgia_cardaca,subject_cardiac_surgery,subject_cuidado,subject_caring,subject_cultura,subject_culture,subject_calidad_de_vida,subject_enfermera,subject_quality_of_life,subject_qualidade_de_vida,subject_enfermagem 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subject_medicine|subject_doajhealth_sciences|subject_doajnursing|subject_nursing|subject_infarto_del_miocrdio|subject_myocardial_infarction|subject_patient_education_as_topic|subject_estudos_de_validao|subject_infarto_do_miocrdio|subject_learning|subject_aprendizagem|subject_estudios_de_validacin|subject_aprendizaje|subject_educao_de_pacientes_como_assunto|subject_educacin_del_paciente_como_asunto|subject_validation_studies|subject_nursing_diagnosis|subject_diagnstico_de_enfermagem|subject_atencin_perioperativa|subject_diagnostico_de_enfermera|subject_perioperative_care|subject_assistncia_perioperatria|subject_cirurgia_torcica|subject_ciruga_torcica|subject_thoracic_surgery|subject_burns|subject_queimaduras|subject_quemaduras|subject_processos_de_enfermagem|subject_nursing_process|subject_procesos_de_enfermera|subject_diagnstico_de_enfermera|subject_doajtechnology_general|subject_technology|subject_doajtechnology_and_engineering|subject_laboratory|subject_weblab|subject_labview|subject_remote|subject_technology_general|subject_doajindustrial_engineering|subject_industrial_engineering_management_engineering|subject_diffraction|subject_doajmedicine_general|subject_doajinternal_medicine|subject_spine|subject_cisticercose|subject_coluna|subject_cysticercosis|subject_medicine_general|subject_magnetic_resonance_imaging|subject_ressonncia_magntica|subject_crebro|subject_brain|subject_medical_physics_medical_radiology_nuclear_medicine|subject_wound_nealing|subject_curativos|subject_cicatrizacion_de_heridas|subject_vendajes|subject_heridas_e_traumatismos|subject_bandages|subject_quemadura|subject_ferimentos_e_leses|subject_cicatrizao_de_feridas|subject_wounds_and_injuries|subject_royal_projects|subject_thai_politics|subject_doajgeneral_works|subject_nordthailand|subject_sufficiency_economy|subject_northern_thailand|subject_general_works|subject_lua_people|subject_doajmultidisciplinary|subject_thailndische_politik|subject_coronary_disease|subject_educao_em_sade|subject_doena_das_coronrias|subject_educacin_en_salud|subject_enfermedad_coronaria|subject_health_education|subject_dolor|subject_etnografia|subject_etnografa|subject_ethnography|subject_data_collection|subject_coleta_de_dados|subject_ciruga_cardiaca|subject_recoleccin_de_datos|subject_cirurgia_cardaca|subject_cardiac_surgery|subject_cuidado|subject_caring|subject_cultura|subject_culture|subject_calidad_de_vida|subject_enfermera|subject_quality_of_life|subject_qualidade_de_vida|subject_enfermagem + + + + OccurrencePointsClusterLabel + + xmeans + + + + epsilon + + 1 + + + + min_points + + 1 + + + + + + + OutputTable + + + non_deterministic_output + + + + \ No newline at end of file diff --git a/src/main/resources/WPSGWTemplate3.xml b/src/main/resources/WPSGWTemplate3.xml new file mode 100644 index 0000000..a04f594 --- /dev/null +++ b/src/main/resources/WPSGWTemplate3.xml @@ -0,0 +1,67 @@ + + + org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_WORKER + + + AlgorithmClass + + #AlgorithmClass# + + + + RightSetStartIndex + + #RightSetStartIndex# + + + + NumberOfRightElementsToProcess + + #NumberOfRightElementsToProcess# + + + + LeftSetStartIndex + + #LeftSetStartIndex# + + + + NumberOfLeftElementsToProcess + + #NumberOfLeftElementsToProcess# + + + + IsDuplicate + + #IsDuplicate# + + + + Session + + #Session# + + + + DeleteTemporaryFiles + + #DeleteTemporaryFiles# + + + + ConfigurationFile + + #ConfigurationFile# + + + + + + + non_deterministic_output + + + + \ No newline at end of file diff --git a/src/main/resources/WPSGWTemplate4.xml b/src/main/resources/WPSGWTemplate4.xml new file mode 100644 index 0000000..d942e49 --- /dev/null +++ b/src/main/resources/WPSGWTemplate4.xml @@ -0,0 +1,201 @@ + + + org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_WORKER + + + + ConfigurationFile + + + -1.4E-45 + -1.4E-45 + -1.4E-45 + + -1.4E-45 + + -2147483648 + -2147483648 + -2147483648 + -2147483648 + ./cfg/ + ./ + + 0 + BIONYM + /gcube/devNext/NextNext + + + DatabaseURL + jdbc:postgresql://statistical-manager.d.d4science.research-infrastructures.eu/testdb + + + + Taxa_Authority_File + WORMS_PISCES + + + Matcher_1 + GSAy + + + RawTaxaNamesTable + generic_id1ecb405c_980f_47a4_926a_3043d065fc7d + + + Matcher_2 + FUZZYMATCH + + + Matcher_3 + LEVENSHTEIN + + + Threshold_4 + 0.4 + + + Matcher_4 + TRIGRAM + + + OutputTableLabel + taxamatchoutputlabel + + + MaxResults_3 + 10 + + + MaxResults_4 + 10 + + + MaxResults_1 + 10 + + + MaxResults_2 + 10 + + + DatabasePassword + d4science + + + Use_Stemmed_Genus_and_Species + false + + + RawNamesColumn + field0 + + + OutputTable + taxamatchoutputlocal + + + Activate_Preparsing_Processing + true + + + DatabaseDriver + org.postgresql.Driver + + + Threshold_1 + 0.6 + + + Parser_Name + SIMPLE + + + Threshold_3 + 0.4 + + + Threshold_2 + 0.6 + + + ServiceUserName + gianpaolo.coro + + + DatabaseUserName + utente + + + ]]> + + + + + DeleteTemporaryFiles + + true + + + + IsDuplicate + + false + + + + Session + + 12345 + + + + AlgorithmClass + + org.gcube.dataanalysis.executor.nodes.transducers.bionym.BionymFlexibleWorkflowTransducer + + + + + NumberOfLeftElementsToProcess + + 1 + + + + LeftSetStartIndex + + 1 + + + + RightSetStartIndex + + 1 + + + + NumberOfRightElementsToProcess + + 1 + + + + + + + OutputTable + + + + non_deterministic_output + + + + + \ No newline at end of file diff --git a/src/main/resources/WPSGWTemplate_working.xml b/src/main/resources/WPSGWTemplate_working.xml new file mode 100644 index 0000000..4f5f70c --- /dev/null +++ b/src/main/resources/WPSGWTemplate_working.xml @@ -0,0 +1,67 @@ + + + org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_WORKER + + + ConfigurationFile + + -1.4E-45 -1.4E-45 -1.4E-45 -1.4E-45 -2147483648 -2147483648 -2147483648 -2147483648 ./cfg/ ./ 0 BIONYM /gcube/devNext/NextNext DatabaseURL jdbc:postgresql://statistical-manager.d.d4science.research-infrastructures.eu/testdb Taxa_Authority_File WORMS_PISCES Matcher_1 GSAy RawTaxaNamesTable generic_id1ecb405c_980f_47a4_926a_3043d065fc7d Matcher_2 FUZZYMATCH Matcher_3 LEVENSHTEIN Threshold_4 0.4 Matcher_4 TRIGRAM OutputTableLabel taxamatchoutputlabel MaxResults_3 10 MaxResults_4 10 MaxResults_1 10 MaxResults_2 10 DatabasePassword d4science Use_Stemmed_Genus_and_Species false RawNamesColumn field0 OutputTable taxamatchoutputlocal Activate_Preparsing_Processing true DatabaseDriver org.postgresql.Driver Threshold_1 0.6 Parser_Name SIMPLE Threshold_3 0.4 Threshold_2 0.6 ServiceUserName gianpaolo.coro DatabaseUserName utente + + + + DeleteTemporaryFiles + + true + + + + IsDuplicate + + false + + + + Session + + 12345 + + + + AlgorithmClass + + org.gcube.dataanalysis.executor.nodes.transducers.bionym.BionymFlexibleWorkflowTransducer + + + + NumberOfLeftElementsToProcess + + 1 + + + + LeftSetStartIndex + + 1 + + + + RightSetStartIndex + + 1 + + + + NumberOfRightElementsToProcess + + 1 + + + + + + + non_deterministic_output + + + + \ No newline at end of file