ecological-engine-geospatia.../src/main/java/org/gcube/dataanalysis/geo/utils/EnvDataExplorer.java

318 lines
17 KiB
Java

package org.gcube.dataanalysis.geo.utils;
import java.util.ArrayList;
import java.util.Arrays;
import java.util.HashMap;
import java.util.LinkedHashMap;
import java.util.List;
import org.gcube.contentmanagement.graphtools.utils.HttpRequest;
import org.gcube.contentmanagement.lexicalmatcher.utils.AnalysisLogger;
import org.gcube.dataanalysis.geo.meta.OGCFormatter;
import com.vividsolutions.jts.geom.Coordinate;
import com.vividsolutions.jts.geom.Geometry;
import com.vividsolutions.jts.geom.GeometryFactory;
import com.vividsolutions.jts.geom.LinearRing;
import com.vividsolutions.jts.geom.MultiPolygon;
import com.vividsolutions.jts.geom.Point;
import com.vividsolutions.jts.geom.Polygon;
import com.vividsolutions.jts.geom.PrecisionModel;
import com.vividsolutions.jts.geom.impl.CoordinateArraySequence;
public class EnvDataExplorer {
private static String callWFS(String geoServer, String layer, double x, double y) {
float tolerance = 0.25f;
String wfsURL = OGCFormatter.getWfsUrl(geoServer, layer, OGCFormatter.pointToBoundingBox(x, y, tolerance), 1, "json");
AnalysisLogger.getLogger().debug("EnvDataExplorer-> Requesting URL: " + wfsURL);
String returned = null;
try {
returned = HttpRequest.sendGetRequest(wfsURL, null);
} catch (Exception e) {
AnalysisLogger.getLogger().debug("EnvDataExplorer-> ERROR " + e.getLocalizedMessage());
}
if (returned != null)
// AnalysisLogger.getLogger().debug("EnvDataExplorer-> Found Intersection: " + returned);
AnalysisLogger.getLogger().debug("EnvDataExplorer-> Found Intersection");
else
AnalysisLogger.getLogger().debug("EnvDataExplorer-> Found Nothing!");
return returned;
}
private static String callWFS(String geoServer, String layer, double xL, double yL, double xR, double yR) {
// String wfsURL = OGCFormatter.getWfsUrl(geoServer, layer, OGCFormatter.buildBoundingBox(xL, yL, xR, yR), 0, "json");
// there is a bug in WFS in the retrieval according to a bounding box: y must be in the range -180;180. then I preferred to take all the features
String wfsURL = OGCFormatter.getWfsUrl(geoServer, layer, null, 0, "json");
AnalysisLogger.getLogger().debug("EnvDataExplorer-> Requesting URL: " + wfsURL);
String returned = null;
try {
returned = HttpRequest.sendGetRequest(wfsURL, null);
} catch (Exception e) {
AnalysisLogger.getLogger().debug("EnvDataExplorer-> ERROR " + e.getLocalizedMessage());
}
if (returned != null)
// AnalysisLogger.getLogger().debug("EnvDataExplorer-> Found Intersection: " + returned);
AnalysisLogger.getLogger().debug("EnvDataExplorer-> Found Intersection");
else
AnalysisLogger.getLogger().debug("EnvDataExplorer-> Found Nothing!");
return returned;
}
public static LinkedHashMap<String, Double> getFeatures(String geoserver, String layer, double x, double y) {
try {
AnalysisLogger.getLogger().debug("Calling WFS towards Geoserver:" + geoserver + " and layer:" + layer);
String jsonString = callWFS(geoserver, layer, x, y);
LinkedHashMap<String, Object> map = JsonMapper.parse(jsonString);
LinkedHashMap<String, String> mapout = (LinkedHashMap<String, String>) ((HashMap<String, Object>) map.get("features")).get("properties");
LinkedHashMap<String, Double> values = new LinkedHashMap<String, Double>();
for (String key : mapout.keySet()) {
values.put(key, Double.parseDouble(mapout.get(key)));
}
return values;
} catch (Exception e) {
AnalysisLogger.getLogger().debug("EnvDataExplorer-> Error in getting properties");
return null;
}
}
public static List<FeaturedPolygon> getFeatures(String geoserver, String layer, double xL, double yL, double xR, double yR) {
try {
AnalysisLogger.getLogger().debug("Calling WFS towards Geoserver:" + geoserver + " and layer:" + layer);
String jsonString = callWFS(geoserver, layer, xL, yL, xR, yR);
// System.out.println("JSON:"+jsonString);
LinkedHashMap<String, Object> map = JsonMapper.parse(jsonString);
List<FeaturedPolygon> fpolygons = new ArrayList<FeaturedPolygon>();
FeaturedPolygon poly = null;
for (String key : map.keySet()) {
if (key.contains("features")) {
HashMap<String, Object> propertiesMap = (HashMap<String, Object>) map.get(key);
// cycle on all the properties
for (String properties : propertiesMap.keySet()) {
if (properties.contains("properties")) {
if (poly == null)
poly = new FeaturedPolygon();
LinkedHashMap<String, String> props = (LinkedHashMap<String, String>) propertiesMap.get(properties);
// fill the properties of the fpolygon
for (String keyprop : props.keySet()) {
try {
// fulfill the FeaturedPolygon
String value = props.get(keyprop);
try {
String lowcaseprop = keyprop.toLowerCase();
if ((poly.value == null) && !lowcaseprop.startsWith("id") && !lowcaseprop.endsWith("id"))
poly.setValue(Double.parseDouble(value));
else
poly.addFeature(keyprop, value);
} catch (Exception e2) {
poly.addFeature(keyprop, value);
}
} catch (Exception e) {
}
}
} else if (properties.contains("geometry") && !properties.contains("geometry_")) {
if (poly == null)
poly = new FeaturedPolygon();
else if (poly.p != null) {
if (poly.value == null)
poly.value = Double.NaN;
fpolygons.add(poly);
poly = new FeaturedPolygon();
}
LinkedHashMap<String, String> props = (LinkedHashMap<String, String>) propertiesMap.get(properties);
List<double[]> coords = WFS2Coordinates(props.toString());
Geometry p = buildGeometryFromCoordinates(coords);
if (p != null) {
poly.setPolygon(p);
AnalysisLogger.getLogger().trace(p);
}
/*
* GeometryFactory factory = new GeometryFactory(new PrecisionModel(), 4326); Polygon p = null; if (coords != null) {
*
* Coordinate[] coordarray = new Coordinate[coords.size()]; int i = 0; for (double[] pair : coords) { coordarray[i] = new Coordinate(pair[0], pair[1]);
*
* i++; } // TODO: build a multipoly if the ring is not closed! CoordinateArraySequence coordseq = new CoordinateArraySequence(coordarray); LinearRing ring = new LinearRing(coordseq, factory); p = new Polygon(ring, new LinearRing[] {}, factory); } poly.setPolygon(p);
*/
}
}
}
}// end for on all the wfs
if (poly != null) {
if (poly.value == null)
poly.value = Double.NaN;
fpolygons.add(poly);
}
return fpolygons;
} catch (Exception e) {
AnalysisLogger.getLogger().debug("EnvDataExplorer-> Error in getting properties");
e.printStackTrace();
return null;
}
}
public static Geometry buildGeometryFromCoordinates(List<double[]> coords) {
Geometry p = null;
GeometryFactory factory = new GeometryFactory(new PrecisionModel(), 4326);
int idx = -1;
List<Coordinate> coordinatesArray = new ArrayList<Coordinate>();
List<Polygon> polys = new ArrayList<Polygon>();
List<LinearRing> holespolys = new ArrayList<LinearRing>();
int j = 1;
int i = 1;
for (double[] pair : coords) {
Coordinate coordPair = new Coordinate(pair[0], pair[1]);
if ((idx = coordinatesArray.indexOf(coordPair)) >= 0) {
// System.out.println("List Contains: "+coordinatesArray.get(idx));
coordinatesArray.add(coordPair);
if (idx == 0) {
// System.out.println("Switching polygon: "+j+" "+coordinatesArray.get(idx));
j++;
i = 1;
Polygon pp = sequence2Polygon(factory, coordinatesArray.subList(idx, coordinatesArray.size()), holespolys);
// System.out.println(pp);
polys.add(pp);
coordinatesArray = new ArrayList<Coordinate>();
} else {
// System.out.println("Linear Ring "+i + " "+coordinatesArray.get(idx));
i++;
LinearRing ring = sequence2Ring(factory, coordinatesArray.subList(idx, coordinatesArray.size()));
holespolys.add(ring);
coordinatesArray = coordinatesArray.subList(0, idx);
}
} else
coordinatesArray.add(coordPair);
}
// build a multipoly if the ring is not closed!
if (polys.size() > 0) {
// cut the holes
List<Polygon> polysnoholes = new ArrayList<Polygon>();
for (Polygon pp : polys) {
boolean found = false;
int h = 0;
for (Polygon polnh : polysnoholes) {
if (polnh.covers(pp)) {
// System.out.println("found hole! "+pp+" vs "+polnh);
polysnoholes.set(h, (Polygon) polnh.difference(pp));
found = true;
} else if (pp.covers(polnh)) {
polysnoholes.set(h, (Polygon) pp.difference(polnh));
found = true;
}
h++;
}
if (!found)
polysnoholes.add(pp);
}
Polygon[] polyrawarray = polysnoholes.toArray(new Polygon[polysnoholes.size()]);
p = new MultiPolygon(polyrawarray, factory);
}
return p;
}
private static LinearRing sequence2Ring(GeometryFactory factory, List<Coordinate> coordinatesArray) {
// System.out.println(coordinatesArray);
Coordinate[] coordrawarray = coordinatesArray.toArray(new Coordinate[coordinatesArray.size()]);
CoordinateArraySequence coordseq = new CoordinateArraySequence(coordrawarray);
LinearRing ring = new LinearRing(coordseq, factory);
return ring;
}
private static Polygon sequence2Polygon(GeometryFactory factory, List<Coordinate> coordinatesArray, List<LinearRing> holespolys) {
// System.out.println(coordinatesArray);
Coordinate[] coordrawarray = coordinatesArray.toArray(new Coordinate[coordinatesArray.size()]);
LinearRing[] holes = holespolys.toArray(new LinearRing[holespolys.size()]);
CoordinateArraySequence coordseq = new CoordinateArraySequence(coordrawarray);
LinearRing ring = new LinearRing(coordseq, factory);
Polygon p = new Polygon(ring, holes, factory);
return p;
}
public static List<double[]> WFS2Coordinates(String wfsgeometry) {
// geometry935133b1-ba3c-493d-8e18-6fb496ced995={type=MultiPolygon, coordinates={966a275c-23aa-4a43-a943-7e1c7eaf5d65=[[[1.5,125.00000000000011],[1.5,124.5],[2.000000000000057,124.5],[2.000000000000057,125.00000000000011],[1.5,125.00000000000011]]]}},
String[] coordinatePairs = null;
List<double[]> dpairs = new ArrayList<double[]>();
if (wfsgeometry.toLowerCase().contains("multipolygon")) {
String coordString = "coordinates=";
String coordinates = wfsgeometry.substring(wfsgeometry.indexOf(coordString) + coordString.length());
coordinates = coordinates.substring(coordinates.indexOf("=") + 1);
if (coordinates.contains("=")) {
coordinates = coordinates.replaceAll("([A-Za-z0-9]|-|_)+=", "");
coordinates = coordinates.replaceAll("\\],( )+\\[", "],[");
}
coordinatePairs = coordinates.split("\\],\\[");
for (String coord : coordinatePairs) {
coord = coord.replaceAll("(\\[|\\]|\\}|\\{|)", "");
String[] coordpair = coord.split(",");
double[] dd = new double[2];
// invert the coordinates as the final must be are long,lat
dd[1] = Double.parseDouble(coordpair[0]);
dd[0] = Double.parseDouble(coordpair[1]);
dpairs.add(dd);
}
}
return dpairs;
}
public static void main1(String[] args) {
String geom = "{type=MultiPolygon, coordinates={cce4daf3-966e-4b5f-adea-f88ea2b93d03=[[[-16,-146.49999999999997],[-16,-146.99999999999994],[-15.5,-146.99999999999994],[-15.5,-146.49999999999997],[-16,-146.49999999999997]]]}}";
List<double[]> coords = WFS2Coordinates(geom);
GeometryFactory factory = new GeometryFactory(new PrecisionModel(), 4326);
// GeometryFactory factory = new GeometryFactory(new PrecisionModel(), 0);
/*
* CoordinateArraySequence coords = new CoordinateArraySequence(new Coordinate[] { new Coordinate(12.0, 34.23), new Coordinate(12.000, 54.555), new Coordinate(7, 8), new Coordinate(12.0, 34.23) }); LinearRing ring = new LinearRing(coords, factory); Polygon p = new Polygon(ring, null, factory); CoordinateArraySequence pcoords = new CoordinateArraySequence(new Coordinate[] { new Coordinate(12.0, 34.23),});
*/
// CoordinateArraySequence coords = new CoordinateArraySequence(new Coordinate[] { new Coordinate(1.5, 125.00000000000011), new Coordinate(1.5, 124.5), new Coordinate(2.000000000000057, 124.5), new Coordinate(2.000000000000057, 125.00000000000011), new Coordinate(1.5, 125.00000000000011) });
if (coords != null) {
Coordinate[] coordarray = new Coordinate[coords.size()];
int i = 0;
for (double[] pair : coords) {
coordarray[i] = new Coordinate(pair[0], pair[1]);
i++;
}
CoordinateArraySequence coordseq = new CoordinateArraySequence(coordarray);
LinearRing ring = new LinearRing(coordseq, factory);
Polygon p = new Polygon(ring, new LinearRing[] {}, factory);
// CoordinateArraySequence pcoords = new CoordinateArraySequence(new Coordinate[] { new Coordinate(-16,-146.49999999999997), });
CoordinateArraySequence pcoords = new CoordinateArraySequence(new Coordinate[] { new Coordinate(-150, -16), });
Point po = new Point(pcoords, factory);
// po = p.getCentroid();
System.out.println("contains: " + p.contains(po) + " boundary: " + p.covers(po));
}
}
public static void main(String[] args) {
String q = "[[[-10.0011869534696,151.288335840039],[-10.0353384533966,151.27859643813],[-10.0228061679999,151.308700562],[-10.0011869534696,151.288335840039]]], e3c47901-3de5-45d2-a272-c6f7d5df1dec=[[[-8.54674625399991,150.53036499],[-8.83403205899992,150.287445068],[-9.20889866086486,150.195933942647],[-9.20555999999993,150.21039],[-9.20777999999995,150.23218],[-9.27360999999991,150.33095],[-9.38638999999995,150.37717],[-9.39873372345699,150.375441317138],[-9.37888717699991,150.41633606],[-9.64140796699991,150.411376953],[-9.68103313399996,150.684051514],[-9.79481071047286,150.758883440934],[-9.74832999999995,150.75027],[-9.73082999999991,150.74884],[-9.70784999999995,150.76262],[-9.7194399999999,150.78802],[-9.73138999999991,150.80304],[-9.74693999999994,150.82163],[-9.81916999999993,150.90026],[-9.85235999999992,150.93539],[-9.89360999999991,150.96274],[-9.98527999999993,151.03055],[-9.99693999999994,151.03943],[-10.0169399999999,151.05996],[-10.0244399999999,151.07303],[-10.0466,151.11809],[-10.0413899999999,151.13666],[-10.03014,151.14818],[-10.0194499999999,151.14875],[-10.0033999999999,151.13893],[-9.98916999999994,151.13637],[-9.94207999999991,151.18817],[-9.93666999999993,151.20053],[-9.93091343037411,151.222140060489],[-9.68598556499995,150.991424561],[-9.45813846599992,150.936889648],[-9.30954170199993,151.03604126],[-9.13122558599991,150.961669922],[-8.80926608999994,151.055862427],[-8.66848054747773,151.099704833311],[-8.63888999999995,151.10107],[-8.56673125859819,151.063276911059],[-8.52198028599992,150.922012329],[-8.54674625399991,150.53036499]],[[-9.43832999999995,150.66666],[-9.44124999999991,150.67997],[-9.42805999999996,150.73191],[-9.42055999999991,150.7462],[-9.40541999999993,150.7615],[-9.41471999999993,150.77777],[-9.43277999999992,150.80442],[-9.45638999999994,150.8283],[-9.52319999999992,150.88692],[-9.64471999999995,150.93219],[-9.65916999999996,150.93055],[-9.67082999999991,150.92163],[-9.68207999999993,150.90387],[-9.67221999999992,150.89177],[-9.67916999999994,150.87523],[-9.71805999999992,150.84692],[-9.68555999999995,150.84412],[-9.65860999999995,150.80163],[-9.66249999999991,150.76331],[-9.66332999999991,150.69135],[-9.66291999999993,150.65804],[-9.65388999999993,150.62274],[-9.62332999999995,150.51443],[-9.5836099999999,150.4905],[-9.44082999999995,150.42746],[-9.4313899999999,150.42331],[-9.41471999999993,150.41999],[-9.40110999999996,150.41999],[-9.38943999999992,150.4219],[-9.37666999999993,150.42609],[-9.35707999999994,150.43913],[-9.33770999999996,150.48044],[-9.34124999999994,150.5022],[-9.35166999999995,150.53028],[-9.37054999999992,150.57135],[-9.38499999999993,150.59802],[-9.40110999999996,150.62149],[-9.4233299999999,150.63734],[-9.43832999999995,150.66666]]], c905ab63-23c2-4587-bdd6-d6d37a56be51=[[[-8.58588343092737,151.123734225448],[-8.59127089890423,151.123748898655],[-8.58637142199996,151.125274658],[-8.58588343092737,151.123734225448]]], 8471299d-4904-4a10-ab00-c6cc5605bf3b=[[[-10.1228941076499,151.06827675758],[-10.1141699999999,151.02582],[-10.1108299999999,150.99831],[-10.1127799999999,150.98331],[-10.1127665622499,150.982996372512],[-10.1466360089999,151.011245728],[-10.1228941076499,151.06827675758]]], d0a0b923-b401-4cec-ac35-c3d8c837bffc=[[[-10.0506772730004,150.931209804608],[-10.0041699999999,150.91553],[-9.92666999999994,150.87774],[-9.83888999999993,150.8269],[-9.80718113528387,150.767019514441],[-10.0277585979999,150.912094116],[-10.0506772730004,150.931209804608]]]}}";
q = q.replaceAll("([A-Za-z0-9]|-|_)+=", "");
// q = q.replaceAll("\\], .*=\\[", "],[");
System.out.println(q);
q = q.replaceAll("\\],( )+\\[", "],[");
System.out.println(q);
}
}