93 lines
3.5 KiB
Java
93 lines
3.5 KiB
Java
package org.gcube.dataanalysis.geo.test.infra;
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import java.util.List;
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import org.gcube.contentmanagement.lexicalmatcher.utils.AnalysisLogger;
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import org.gcube.dataanalysis.ecoengine.configuration.AlgorithmConfiguration;
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import org.gcube.dataanalysis.ecoengine.datatypes.StatisticalType;
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import org.gcube.dataanalysis.ecoengine.interfaces.ComputationalAgent;
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import org.gcube.dataanalysis.ecoengine.processing.factories.TransducerersFactory;
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import org.gcube.dataanalysis.ecoengine.test.regression.Regressor;
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import org.gcube.dataanalysis.geo.connectors.table.TableMatrixRepresentation;
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public class TestMaxEnt {
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static AlgorithmConfiguration[] configs = { testMaxentTemperature()};
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public static void main(String[] args) throws Exception {
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System.out.println("TEST 1");
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for (int i = 0; i < configs.length; i++) {
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AnalysisLogger.getLogger().debug("Executing: "+configs[i].getAgent());
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List<ComputationalAgent> trans = null;
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trans = TransducerersFactory.getTransducerers(configs[i]);
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trans.get(0).init();
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Regressor.process(trans.get(0));
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StatisticalType st = trans.get(0).getOutput();
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AnalysisLogger.getLogger().debug("ST:" + st);
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trans = null;
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}
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}
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private static AlgorithmConfiguration testMaxentTemperature() {
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AlgorithmConfiguration config = new AlgorithmConfiguration();
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config.setAgent("MAX_ENT_NICHE_MODELLING");
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config.setConfigPath("./cfg/");
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config.setPersistencePath("./");
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config.setParam("DatabaseUserName","gcube");
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config.setParam("DatabasePassword","d4science2");
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config.setParam("DatabaseURL","jdbc:postgresql://localhost/testdb");
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config.setParam("DatabaseDriver","org.postgresql.Driver");
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config.setGcubeScope("/gcube/devsec/devVRE");
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config.setParam("OutputTableName","maxenttest");
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config.setParam("OutputTableLabel","maxenttest");
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config.setParam("SpeciesName","testsspecies");
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config.setParam("OccurrencesTable","occurrence_species_id0045886b_2a7c_4ede_afc4_3157c694b893");
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config.setParam("LongitudeColumn","decimallongitude");
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config.setParam("LatitudeColumn","decimallatitude");
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config.setParam("ScientificNameColumn","scientificname");
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String sep=AlgorithmConfiguration.getListSeparator();
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// config.setParam("Layers","dfd1bad2-ab00-42ac-8bb2-46a17162f509"+sep+"23646f93-23a8-4be4-974e-aee6bebe1707");
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//config.setParam("Layers","94ea5767-ae76-41dc-be87-f9a0bdc96419");//temperature 99-09 2D
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// config.setParam("Layers","23646f93-23a8-4be4-974e-aee6bebe1707");//ph
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// config.setParam("Layers","fc9ac2f4-a2bd-43d1-a361-ac67c5ceac31");//temperature
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config.setParam("Layers","http://geoserver-dev.d4science-ii.research-infrastructures.eu/geoserver/ows?service=wfs&version=1.0.0&request=GetFeature&srsName=urn:x-ogc:def:crs:EPSG:4326&TYPENAME=aquamaps:worldborders");
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config.setParam("MaxIterations","10000");
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config.setParam("DefaultPrevalence","1");
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config.setParam("Z","0");
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config.setParam("TimeIndex","0");
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config.setParam("BBox_LowerLeftLong","-180");
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config.setParam("BBox_UpperRightLong","180");
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config.setParam("BBox_LowerLeftLat","-90");
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config.setParam("BBox_UpperRightLat","90");
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/*
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config.setParam("BBox_LowerLeftLong","-60");
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config.setParam("BBox_UpperRightLong","60");
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config.setParam("BBox_LowerLeftLat","-10");
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config.setParam("BBox_UpperRightLat","10");
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*/
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// config.setParam("XResolution","0.5");
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// config.setParam("YResolution","0.5");
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config.setParam("XResolution","1");
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config.setParam("YResolution","1");
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return config;
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}
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}
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