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ecological-engine-geospatial-extensions
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adjusted maps comparison 

git-svn-id: https://svn.d4science.research-infrastructures.eu/gcube/trunk/data-analysis/EcologicalEngineGeoSpatialExtension@97944 82a268e6-3cf1-43bd-a215-b396298e98cf
This commit is contained in:
Gianpaolo Coro 2014-06-27 15:27:07 +00:00
parent 60fb5d8e1a
commit b1d22554eb
3 changed files with 55 additions and 1 deletions
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6
src/main/java/org/gcube/dataanalysis/geo/infrastructure/GeoNetworkInspector.java
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@ -470,7 +470,9 @@ public class GeoNetworkInspector {
private Metadata getGNInfobyUUID(String UUID) throws Exception {
AnalysisLogger.getLogger().debug("Initializing GeoNetwork");
GeoNetworkReader gn = initGeoNetworkReader();
AnalysisLogger.getLogger().debug("Initialized GeoNetwork!");
// Form query object
gn.login(LoginLevel.DEFAULT);
Metadata meta = gn.getById(UUID);
@ -486,6 +488,7 @@ public class GeoNetworkInspector {
try {
meta = getGNInfobyUUID(layerUUIDorTitle);
} catch (Exception e) {
e.printStackTrace();
AnalysisLogger.getLogger().debug("MapsComparator: Impossible to get layer as UUID");
}
@ -494,7 +497,8 @@ public class GeoNetworkInspector {
try {
meta = checkForMetadatabyTitle(GeoNetworkInspector.treatTitleForGN(layerUUIDorTitle), layerUUIDorTitle);
} catch (Exception e) {
throw new Exception("Layer does not exist");
e.printStackTrace();
throw new Exception("Layer does not exist "+e.getLocalizedMessage());
}
}

1
src/main/java/org/gcube/dataanalysis/geo/matrixmodel/MatrixExtractor.java
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@ -33,6 +33,7 @@ public class MatrixExtractor {
public List<Tuple<Double>> currentTuples;
public MatrixExtractor(AlgorithmConfiguration configuration) {
AnalysisLogger.getLogger().debug("Matrix Extractor: setting GeoNetwork search scope to "+configuration.getGcubeScope());
gnInspector = new GeoNetworkInspector();
gnInspector.setScope(configuration.getGcubeScope());
this.configuration = configuration;

49
src/main/java/org/gcube/dataanalysis/geo/test/maps/TestMapsComparisonGeothermal.java Normal file
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@ -0,0 +1,49 @@
package org.gcube.dataanalysis.geo.test.maps;
import org.gcube.common.scope.api.ScopeProvider;
import org.gcube.contentmanagement.lexicalmatcher.utils.AnalysisLogger;
import org.gcube.dataanalysis.ecoengine.configuration.AlgorithmConfiguration;
import org.gcube.dataanalysis.geo.algorithms.MapsComparator;
import org.gcube.dataanalysis.geo.matrixmodel.MatrixExtractor;
import org.gcube.dataanalysis.geo.matrixmodel.RasterTable;
public class TestMapsComparisonGeothermal {
static String cfg = "./cfg/";
public static void main(String[] args) throws Exception{
// String layertitle = "Temperature in [12-15-09 01:00] (3D) {Native grid ORCA025.L75 monthly average: Data extracted from dataset http://atoll-mercator.vlandata.cls.fr:44080/thredds/dodsC/global-reanalysis-phys-001-004-b-ref-fr-mjm95-gridt}";
// String layertitle = "Standard Deviation from Statistical Mean from [01-16-01 01:00] to [12-16-01 01:00] (3D) {World Ocean Atlas 09: Sea Water Temperature - monthly: dods://thredds.research-infrastructures.eu/thredds/dodsC/public/netcdf/temperature_monthly_1deg_ENVIRONMENT_OCEANS_.nc}";
// String layertitle = "86a7ac79-866a-49c6-b5d5-602fc2d87ddd";
String layertitle = "821b1753-a52c-45ff-9a39-14af88833a0f";
// String layertitle2 = "Statistical Mean in [07-01-01 01:00] (3D) {World Ocean Atlas 09: Sea Water Temperature - annual: dods://thredds.research-infrastructures.eu/thredds/dodsC/public/netcdf/temperature_annual_1deg_ENVIRONMENT_OCEANS_.nc}";
// String layertitle2 = "0e03d0fa-9c44-4a0c-a7e3-9f6d48710d00";
// String layertitle2 = layertitle;
String layertitle2 = "821b1753-a52c-45ff-9a39-14af88833a0f";
// {MEAN=224.49, VARIANCE=10337.11, NUMBER_OF_ERRORS=47054, NUMBER_OF_COMPARISONS=65522, ACCURACY=28.19, MAXIMUM_ERROR=303.6, MAXIMUM_ERROR_POINT=5006:104, Resolution=0.9972222222222222}
// layertitle = "3fb7fd88-33d4-492d-b241-4e61299c44bb";
// layertitle2 = "3fb7fd88-33d4-492d-b241-4e61299c44bb";
AnalysisLogger.setLogger(cfg+AlgorithmConfiguration.defaultLoggerFile);
AlgorithmConfiguration config = new AlgorithmConfiguration();
config.setConfigPath(cfg);
config.setPersistencePath("./");
config.setParam("DatabaseUserName","gcube");
config.setParam("DatabasePassword","d4science2");
config.setParam("DatabaseURL","jdbc:postgresql://localhost/testdb");
config.setParam("DatabaseDriver","org.postgresql.Driver");
config.setParam("Layer_1",layertitle);
config.setParam("Layer_2",layertitle2);
config.setParam("ValuesComparisonThreshold",""+0.1);
config.setParam("Z","0");
config.setGcubeScope(null);
ScopeProvider.instance.set("/gcube/devNext/NextNext");
// ScopeProvider.instance.set("/gcube/devsec");
MapsComparator mc = new MapsComparator();
mc.setConfiguration(config);
mc.init();
mc.compute();
mc.getOutput();
}
}