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ecological-engine-geospatial-extensions
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better management of netcdf data 

git-svn-id: https://svn.d4science.research-infrastructures.eu/gcube/trunk/data-analysis/EcologicalEngineGeoSpatialExtension@126652 82a268e6-3cf1-43bd-a215-b396298e98cf
This commit is contained in:
Gianpaolo Coro 2016-04-01 15:19:00 +00:00
parent bdb0cb2186
commit 3bd6490699
3 changed files with 54 additions and 34 deletions
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57
pom.xml
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@ -9,11 +9,28 @@
</parent>
<groupId>org.gcube.dataanalysis</groupId>
<artifactId>ecological-engine-geospatial-extensions</artifactId>
<version>1.3.7-SNAPSHOT</version>
<name>ecological-engine-geospatial-extension</name>
<version>1.3.8-SNAPSHOT</version>
<name>ecological-engine-geospatial-extension library</name>
<description>ecological-engine-geospatial-extension</description>
<scm>
<url>https://svn.d4science.research-infrastructures.eu/gcube/trunk/data-analysis/EcologicalEngineGeoSpatialExtension</url>
</scm>
<developers>
<developer>
<name>Gianpaolo Coro</name>
<email>gianpaolo.coro@isti.cnr.it</email>
<organization>CNR Pisa, Istituto di Scienza e Tecnologie dell'Informazione "A. Faedo"</organization>
<roles>
<role>architect</role>
<role>developer</role>
</roles>
</developer>
</developers>
<properties>
<distroDirectory>${project.basedir}/distro</distroDirectory>
<webappDirectory>${project.build.directory}/${project.build.finalName}</webappDirectory>
<distroDirectory>distro</distroDirectory>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
<project.reporting.outputEncoding>UTF-8</project.reporting.outputEncoding>
</properties>
<dependencies>
<dependency>
@ -125,8 +142,11 @@
</repositories>
<build>
<plugins>
<plugin>
<artifactId>maven-compiler-plugin</artifactId>
<version>3.1</version>
<configuration>
<source>1.6</source>
<target>1.6</target>
@ -135,37 +155,14 @@
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-surefire-plugin</artifactId>
<version>2.12</version>
<version>2.18.1</version>
<configuration>
<skipTests>true</skipTests>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-resources-plugin</artifactId>
<version>2.5</version>
<executions>
<execution>
<id>copy-profile</id>
<phase>install</phase>
<goals>
<goal>copy-resources</goal>
</goals>
<configuration>
<outputDirectory>target</outputDirectory>
<resources>
<resource>
<directory>${distroDirectory}</directory>
<filtering>true</filtering>
<includes>
<include>profile.xml</include>
</includes>
</resource>
</resources>
</configuration>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-assembly-plugin</artifactId>

30
src/main/java/org/gcube/dataanalysis/geo/connectors/netcdf/NetCDFDataExplorer.java
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@ -87,7 +87,9 @@ public class NetCDFDataExplorer {
}
}
} catch (Exception e) {
e.printStackTrace();
AnalysisLogger.getLogger().debug("NetCDF Explorer Error:" + e.getLocalizedMessage());
AnalysisLogger.getLogger().debug(e);
}
}
@ -207,7 +209,7 @@ public class NetCDFDataExplorer {
xmin = -180;
is0_360 = true;
}
AnalysisLogger.getLogger().debug("Assigning "+tsize+" grid elements to the NetCDF values");
for (int i = 0; i < tsize; i++) {
int zint = 0;
int xint = 0;
@ -239,7 +241,7 @@ public class NetCDFDataExplorer {
x = xmax;
try{
int[] idxbb = gcs.findXYindexFromLatLon(75,10, null);
int[] idxo = gcs.findXYindexFromLatLon(0,0, null);
LatLonPoint inverseOrigin = gcs.getLatLon(idxo[0],idxo[1]);
@ -247,14 +249,20 @@ public class NetCDFDataExplorer {
//correction to origin offset
x = x - inverseOrigin.getLongitude();
y = y - inverseOrigin.getLatitude();
if (i==0)
AnalysisLogger.getLogger().debug("bb: " + idxbb[0] +","+idxbb[1]+" origin: "+idxo[0]+","+idxo[1]+" middle "+xD/2+","+yD/2+" shift "+(idxo[0]-(xD/2))+" inverse shift on origin "+inverseOrigin);
}catch(Exception e){
AnalysisLogger.getLogger().debug("Error getting x,y corrections "+e.getLocalizedMessage());
e.printStackTrace();
}
int[] idx = gcs.findXYindexFromLatLon(y,x, null);
xint = idx[0];
yint = idx[1];
if (yint < 0) {
yint = 0;
}
@ -295,7 +303,21 @@ public class NetCDFDataExplorer {
val = Double.valueOf(data2Double.get(yint, xint));
else if (data2Long != null)
val = Double.valueOf(data2Long.get(yint, xint));
AnalysisLogger.getLogger().debug("Choice "+ (data3Float!=null)+","+
(data3Int!=null)+","+
(data3Double!=null)+","+
(data3Long!=null)+","+
(data2Float!=null)+","+
(data2Int!=null)+","+
(data2Double!=null)+","+
(data2Long!=null));
// AnalysisLogger.getLogger().debug("Assigning "+val+" to "+x+","+y+" ["+xint+","+yint+"]");
// AnalysisLogger.getLogger().debug("checking "+data2Float.get(yint, xint)+" vs ");
// try{AnalysisLogger.getLogger().debug("checking2 "+data2Float.get(xint,yint));}catch(Exception e){}
values.add(val);
}
break;

1
src/main/java/org/gcube/dataanalysis/geo/matrixmodel/MatrixExtractor.java
View File

@ -208,6 +208,7 @@ public class MatrixExtractor {
if (log) {
AnalysisLogger.getLogger().debug("MatrixExtractor->Building the points grid according to YRes:" + yResolution + " and XRes:" + xResolution);
AnalysisLogger.getLogger().debug("MatrixExtractor->Assigning "+tuples.size()+" values to the grid");
}
// long t0=System.currentTimeMillis();