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ecological-engine-geospatial-extensions
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git-svn-id: https://svn.d4science.research-infrastructures.eu/gcube/trunk/data-analysis/EcologicalEngineGeoSpatialExtension@76476 82a268e6-3cf1-43bd-a215-b396298e98cf

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Gianpaolo Coro 2013-05-29 15:09:12 +00:00
parent 607b06167a
commit 0b450065dc
2 changed files with 82 additions and 0 deletions
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src/main/java/org/gcube/dataanalysis/geo/test/TestMapsComparison.java Normal file
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package org.gcube.dataanalysis.geo.test;
import org.gcube.contentmanagement.lexicalmatcher.utils.AnalysisLogger;
import org.gcube.dataanalysis.ecoengine.configuration.AlgorithmConfiguration;
import org.gcube.dataanalysis.geo.algorithms.MapsComparator;
import org.gcube.dataanalysis.geo.insertion.RasterTable;
import org.gcube.dataanalysis.geo.retrieval.GeoIntersector;
public class TestMapsComparison {
static String cfg = "./cfg/";
public static void main(String[] args) throws Exception{
// String layertitle = "MyDistributionMap";
// String layertitle = "Mass Concentration of Chlorophyll in Sea Water in [03-30-13 01:00] (3D) {Mercator Ocean BIOMER1V1R1: Data extracted from dataset http://atoll-mercator.vlandata.cls.fr:44080/thredds/dodsC/global-analysis-bio-001-008-a}";
String layertitle = "Temperature in [12-15-09 01:00] (3D) {Native grid ORCA025.L75 monthly average: Data extracted from dataset http://atoll-mercator.vlandata.cls.fr:44080/thredds/dodsC/global-reanalysis-phys-001-004-b-ref-fr-mjm95-gridt}";
String layertitle2 = "Statistical Mean in [07-01-01 01:00] (3D) {World Ocean Atlas 09: Sea Water Temperature - annual: dods://thredds.research-infrastructures.eu/thredds/dodsC/public/netcdf/temperature_annual_1deg_ENVIRONMENT_OCEANS_.nc}";
// String layertitle2 = "Objectively Analyzed Climatology in [07-01-01 01:00] (3D) {World Ocean Atlas 09: Sea Water Temperature - annual: dods://thredds.research-infrastructures.eu/thredds/dodsC/public/netcdf/temperature_annual_1deg_ENVIRONMENT_OCEANS_.nc}";
// String layertitle2 = "FAO AQUATIC SPECIES DISTRIBUTION MAP OF MEGALASPIS CORDYLA";
// {MEAN=224.49, VARIANCE=10337.11, NUMBER_OF_ERRORS=47054, NUMBER_OF_COMPARISONS=65522, ACCURACY=28.19, MAXIMUM_ERROR=303.6, MAXIMUM_ERROR_POINT=5006:104, Resolution=0.9972222222222222}
//{MEAN=1.01, VARIANCE=0.01, NUMBER_OF_ERRORS=1823, NUMBER_OF_COMPARISONS=260281, ACCURACY=99.3, MAXIMUM_ERROR=2.0, MAXIMUM_ERROR_POINT=1010:207:3, Resolution=0.5}
AnalysisLogger.setLogger(cfg+AlgorithmConfiguration.defaultLoggerFile);
AlgorithmConfiguration config = new AlgorithmConfiguration();
config.setConfigPath(cfg);
config.setPersistencePath("./");
config.setParam("DatabaseUserName","gcube");
config.setParam("DatabasePassword","d4science2");
config.setParam("DatabaseURL","jdbc:postgresql://localhost/testdb");
config.setParam("DatabaseDriver","org.postgresql.Driver");
config.setParam("LayerTitle_1",layertitle);
config.setParam("LayerTitle_2",layertitle2);
config.setParam("ValuesComparisonThreshold",""+100);
config.setParam("Z","0");
config.setGcubeScope(null);
MapsComparator mc = new MapsComparator();
mc.setConfiguration(config);
mc.init();
mc.compute();
}
}

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src/main/java/org/gcube/dataanalysis/geo/test/TestMapsComparisonExampleTCOM.java Normal file
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package org.gcube.dataanalysis.geo.test;
import org.gcube.contentmanagement.lexicalmatcher.utils.AnalysisLogger;
import org.gcube.dataanalysis.ecoengine.configuration.AlgorithmConfiguration;
import org.gcube.dataanalysis.geo.algorithms.MapsComparator;
import org.gcube.dataanalysis.geo.insertion.RasterTable;
import org.gcube.dataanalysis.geo.retrieval.GeoIntersector;
public class TestMapsComparisonExampleTCOM {
static String cfg = "./cfg/";
public static void main(String[] args) throws Exception{
// String layertitle = "MyDistributionMap";
// String layertitle = "Mass Concentration of Chlorophyll in Sea Water in [03-30-13 01:00] (3D) {Mercator Ocean BIOMER1V1R1: Data extracted from dataset http://atoll-mercator.vlandata.cls.fr:44080/thredds/dodsC/global-analysis-bio-001-008-a}";
String layertitle2 = "FAO aquatic species distribution map of Eleutheronema tetradactylum";
// String layertitle2 = "Objectively Analyzed Climatology in [07-01-01 01:00] (3D) {World Ocean Atlas 09: Sea Water Temperature - annual: dods://thredds.research-infrastructures.eu/thredds/dodsC/public/netcdf/temperature_annual_1deg_ENVIRONMENT_OCEANS_.nc}";
// String layertitle2 = "FAO AQUATIC SPECIES DISTRIBUTION MAP OF MEGALASPIS CORDYLA";
String layertitle = "FAO aquatic species distribution map of Leptomelanosoma indicum";
//{MEAN=1.01, VARIANCE=0.01, NUMBER_OF_ERRORS=1823, NUMBER_OF_COMPARISONS=260281, ACCURACY=99.3, MAXIMUM_ERROR=2.0, MAXIMUM_ERROR_POINT=1010:207:3, Resolution=0.5}
AnalysisLogger.setLogger(cfg+AlgorithmConfiguration.defaultLoggerFile);
AlgorithmConfiguration config = new AlgorithmConfiguration();
config.setConfigPath(cfg);
config.setPersistencePath("./");
config.setParam("DatabaseUserName","gcube");
config.setParam("DatabasePassword","d4science2");
config.setParam("DatabaseURL","jdbc:postgresql://localhost/testdb");
config.setParam("DatabaseDriver","org.postgresql.Driver");
config.setParam("LayerTitle_1",layertitle);
config.setParam("LayerTitle_2",layertitle2);
config.setParam("Z","0");
config.setGcubeScope(null);
MapsComparator mc = new MapsComparator();
mc.setConfiguration(config);
mc.init();
mc.compute();
}
}