2014-03-03 15:20:25 +01:00
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package org.gcube.dataanalysis.geo.test.infra;
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import java.util.List;
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import org.gcube.contentmanagement.lexicalmatcher.utils.AnalysisLogger;
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import org.gcube.dataanalysis.ecoengine.configuration.AlgorithmConfiguration;
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import org.gcube.dataanalysis.ecoengine.datatypes.StatisticalType;
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import org.gcube.dataanalysis.ecoengine.interfaces.ComputationalAgent;
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import org.gcube.dataanalysis.ecoengine.processing.factories.TransducerersFactory;
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import org.gcube.dataanalysis.ecoengine.test.regression.Regressor;
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import org.gcube.dataanalysis.geo.connectors.table.TableMatrixRepresentation;
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public class TestExtraction {
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2014-03-06 12:56:54 +01:00
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static AlgorithmConfiguration[] configs = { testXYExtractionNetCDF(),testXYExtractionAquaMaps(),testXYExtractionTable(),testXYExtractionTable2()};
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// static AlgorithmConfiguration[] configs = { testXYExtractionTable2()};
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// static AlgorithmConfiguration[] configs = { testDirectExtraction()};
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2014-03-03 15:20:25 +01:00
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public static void main(String[] args) throws Exception {
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System.out.println("TEST 1");
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for (int i = 0; i < configs.length; i++) {
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AnalysisLogger.getLogger().debug("Executing: "+configs[i].getAgent());
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List<ComputationalAgent> trans = null;
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trans = TransducerersFactory.getTransducerers(configs[i]);
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trans.get(0).init();
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Regressor.process(trans.get(0));
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StatisticalType st = trans.get(0).getOutput();
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AnalysisLogger.getLogger().debug("ST:" + st);
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trans = null;
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}
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}
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private static AlgorithmConfiguration testXYExtractionNetCDF() {
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AlgorithmConfiguration config = new AlgorithmConfiguration();
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2014-03-06 12:56:54 +01:00
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config.setAgent("XYEXTRACTOR");
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2014-03-03 15:20:25 +01:00
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config.setConfigPath("./cfg/");
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config.setPersistencePath("./");
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config.setParam("DatabaseUserName","gcube");
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config.setParam("DatabasePassword","d4science2");
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config.setParam("DatabaseURL","jdbc:postgresql://localhost/testdb");
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config.setParam("DatabaseDriver","org.postgresql.Driver");
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config.setGcubeScope("/d4science.research-infrastructures.eu/gCubeApps/BiodiversityLab");
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config.setParam("Layer","c565e32c-c5b3-4964-b44f-06dc620563e9");
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config.setParam("Z","0");
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config.setParam("TimeIndex","0");
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2014-03-04 20:01:27 +01:00
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config.setParam("BBox_LowerLeftLat","-60");
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config.setParam("BBox_LowerLeftLong","-50");
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config.setParam("BBox_UpperRightLat","60");
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config.setParam("BBox_UpperRightLong","50");
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2014-03-03 15:20:25 +01:00
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config.setParam("XResolution","0.5");
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config.setParam("YResolution","0.5");
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config.setParam("OutputTableName","testextraction");
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config.setParam("OutputTableLabel","testextraction");
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return config;
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}
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2014-03-06 12:56:54 +01:00
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private static AlgorithmConfiguration testDirectExtraction() {
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AlgorithmConfiguration config = new AlgorithmConfiguration();
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config.setAgent("XYEXTRACTOR");
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config.setConfigPath("./cfg/");
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config.setPersistencePath("./");
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config.setParam("DatabaseUserName","gcube");
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config.setParam("DatabasePassword","d4science2");
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config.setParam("DatabaseURL","jdbc:postgresql://localhost/testdb");
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config.setParam("DatabaseDriver","org.postgresql.Driver");
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config.setGcubeScope("/d4science.research-infrastructures.eu/gCubeApps/BiodiversityLab");
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config.setParam("Layer","https://dl.dropboxusercontent.com/u/12809149/geoserver-GetCoverage.image.asc");
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config.setParam("Z","0");
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config.setParam("TimeIndex","0");
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config.setParam("BBox_LowerLeftLat","-60");
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config.setParam("BBox_LowerLeftLong","-50");
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config.setParam("BBox_UpperRightLat","60");
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config.setParam("BBox_UpperRightLong","50");
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config.setParam("XResolution","0.5");
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config.setParam("YResolution","0.5");
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config.setParam("OutputTableName","testextraction");
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config.setParam("OutputTableLabel","testextraction");
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return config;
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}
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2014-03-03 15:20:25 +01:00
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private static AlgorithmConfiguration testXYExtractionAquaMaps() {
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AlgorithmConfiguration config = testXYExtractionNetCDF();
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config.setParam("Layer","04e61cb8-3c32-47fe-823c-80ac3d417a0b");
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config.setParam("OutputTableName","testextractionaquamaps");
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return config;
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}
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private static AlgorithmConfiguration testXYExtractionTable() {
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AlgorithmConfiguration config = testXYExtractionNetCDF();
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config.setAgent("XYEXTRACTOR_TABLE");
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config.setParam("OutputTableName","testextractiontable");
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config.setParam("DatabaseUserName", "utente");
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config.setParam("DatabasePassword", "d4science");
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config.setParam("DatabaseURL", "jdbc:postgresql://statistical-manager.d.d4science.research-infrastructures.eu/testdb");
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config.setParam("DatabaseDriver", "org.postgresql.Driver");
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// vessels
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2014-03-04 20:01:27 +01:00
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/*
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2014-03-03 15:20:25 +01:00
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config.setParam(TableMatrixRepresentation.tableNameParameter, "generic_id037d302d_2ba0_4e43_b6e4_1a797bb91728");
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config.setParam(TableMatrixRepresentation.xDimensionColumnParameter, "x");
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config.setParam(TableMatrixRepresentation.yDimensionColumnParameter, "y");
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config.setParam(TableMatrixRepresentation.timeDimensionColumnParameter, "datetime");
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config.setParam(TableMatrixRepresentation.valueDimensionColumnParameter, "speed");
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config.setParam(TableMatrixRepresentation.filterParameter, "speed<2");
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2014-03-04 20:01:27 +01:00
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*/
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config.setParam(TableMatrixRepresentation.tableNameParameter, "occurrence_species_id0045886b_2a7c_4ede_afc4_3157c694b893");
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config.setParam(TableMatrixRepresentation.xDimensionColumnParameter, "decimallongitude");
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config.setParam(TableMatrixRepresentation.yDimensionColumnParameter, "decimallatitude");
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config.setParam(TableMatrixRepresentation.timeDimensionColumnParameter, " ");
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config.setParam(TableMatrixRepresentation.valueDimensionColumnParameter, "decimallatitude");
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config.setParam(TableMatrixRepresentation.filterParameter, " ");
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2014-03-03 15:20:25 +01:00
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return config;
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}
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2014-03-06 12:56:54 +01:00
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private static AlgorithmConfiguration testXYExtractionTable2() {
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AlgorithmConfiguration config = testXYExtractionNetCDF();
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config.setAgent("XYEXTRACTOR_TABLE");
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config.setParam("OutputTableName","testextractiontable");
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config.setParam("DatabaseUserName", "utente");
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config.setParam("DatabasePassword", "d4science");
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config.setParam("DatabaseURL", "jdbc:postgresql://statistical-manager.d.d4science.research-infrastructures.eu/testdb");
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config.setParam("DatabaseDriver", "org.postgresql.Driver");
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// vessels
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/*
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config.setParam(TableMatrixRepresentation.tableNameParameter, "generic_id037d302d_2ba0_4e43_b6e4_1a797bb91728");
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config.setParam(TableMatrixRepresentation.xDimensionColumnParameter, "x");
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config.setParam(TableMatrixRepresentation.yDimensionColumnParameter, "y");
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config.setParam(TableMatrixRepresentation.timeDimensionColumnParameter, "datetime");
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config.setParam(TableMatrixRepresentation.valueDimensionColumnParameter, "speed");
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config.setParam(TableMatrixRepresentation.filterParameter, "speed<2");
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*/
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config.setParam(TableMatrixRepresentation.tableNameParameter, "occurrence_species_id0045886b_2a7c_4ede_afc4_3157c694b893");
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config.setParam(TableMatrixRepresentation.xDimensionColumnParameter, "decimallongitude");
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config.setParam(TableMatrixRepresentation.yDimensionColumnParameter, "decimallatitude");
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config.setParam(TableMatrixRepresentation.timeDimensionColumnParameter, "modified");
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config.setParam(TableMatrixRepresentation.valueDimensionColumnParameter, "decimallatitude");
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config.setParam(TableMatrixRepresentation.filterParameter, " ");
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config.setParam("Z","0");
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config.setParam("TimeIndex","1");
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return config;
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}
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2014-03-03 15:20:25 +01:00
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}
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