git-svn-id: https://svn.d4science.research-infrastructures.eu/gcube/trunk/data-analysis/dataminer-pool-manager@160557 82a268e6-3cf1-43bd-a215-b396298e98cf

pom.xml

@@ -12,7 +12,7 @@
 	<groupId>org.gcube.dataAnalysis</groupId>
 	<artifactId>dataminer-pool-manager</artifactId>
 	<packaging>war</packaging>
-	<version>2.3.0-SNAPSHOT</version>
+	<version>2.4.0-SNAPSHOT</version>
 
 	<name>dataminer-pool-manager</name>
 	<description>

src/main/java/org/gcube/dataanalysis/dataminer/poolmanager/clients/configuration/DMPMClientConfiguratorManager.java

@@ -1,6 +1,8 @@
 package org.gcube.dataanalysis.dataminer.poolmanager.clients.configuration;
 
 ***REMOVED***
+import java.util.Iterator;
+import java.util.Properties;
 
 ***REMOVED***
 import org.gcube.dataanalysis.dataminer.poolmanager.clients.ScopedCacheMap;
@@ -11,6 +13,8 @@ import org.tmatesoft.svn.core.SVNException;
 
 public class DMPMClientConfiguratorManager{
 	private  final Logger logger;
+	private Properties defaultAdmins;
+	private String admins;
 	
 	static DMPMClientConfiguratorManager instance;
 	
@@ -18,8 +22,19 @@ public class DMPMClientConfiguratorManager{
 	
 	private DMPMClientConfiguratorManager ()
 	{
+		this.admins = null;
 		this.cacheMap = new ScopedCacheMap();
 		this.logger = LoggerFactory.getLogger(DMPMClientConfiguratorManager.class);
+		this.defaultAdmins = new Properties();
+		
+		try
+		{
+			this.defaultAdmins.load(this.getClass().getResourceAsStream("/default.admins"));
+			this.logger.debug("Default users successfully loaded");
+	***REMOVED*** catch (Exception e)
+		{
+			this.logger.error("Unable to get default users",e);
+	***REMOVED***
 ***REMOVED***
 	
 	private ClientConfigurationCache getCurrentCache ()
@@ -60,6 +75,29 @@ public class DMPMClientConfiguratorManager{
 		return new ConfigurationImpl(CONFIGURATIONS.STAGE, getCurrentCache());
 ***REMOVED***
 	
+	public String getDefaultAdmins ()
+	{
+		if (this.admins == null && this.defaultAdmins.isEmpty()) this.admins= "ciro.formisano";
+		else if (admins == null)
+		{
+				Iterator<Object> keys = this.defaultAdmins.keySet().iterator();
+				StringBuilder response = new StringBuilder();
+				
+				while (keys.hasNext())
+				{
+					String key = (String) keys.next();
+					response.append(this.defaultAdmins.getProperty(key)).append(", ");
+			***REMOVED***
+				
+				this.admins = response.substring(0, response.length()-2);
+	***REMOVED***
+		
+		this.logger.debug("Default admins list "+this.admins);
+		return this.admins;
+
+***REMOVED***
+		
+	
 	public static void main(String[] args) throws IOException, SVNException {
 		DMPMClientConfiguratorManager a = new DMPMClientConfiguratorManager();
 		ScopeProvider.instance.set("/gcube/devNext/NextNext");

src/main/java/org/gcube/dataanalysis/dataminer/poolmanager/service/DMPMJob.java

@@ -19,7 +19,9 @@ import org.gcube.dataanalysis.dataminer.poolmanager.util.CheckMethod;
 import org.gcube.dataanalysis.dataminer.poolmanager.util.NotificationHelper;
 import org.gcube.dataanalysis.dataminer.poolmanager.util.SVNUpdater;
 import org.gcube.dataanalysis.dataminer.poolmanager.util.SendMail;
+import org.gcube.dataanalysis.dataminer.poolmanager.util.exception.AlgorithmException;
 import org.gcube.dataanalysis.dataminer.poolmanager.util.exception.EMailException;
+import org.gcube.dataanalysis.dataminer.poolmanager.util.exception.SVNCommitException;
 ***REMOVED***
 ***REMOVED***
 import org.tmatesoft.svn.core.SVNException;
@@ -186,18 +188,34 @@ public abstract class DMPMJob {
 			***REMOVED***this.setStatusInformation(STATUS.PROGRESS);
 			this.logger.debug("Checking the method...");
 			
-			if (methodChecker.checkMethod(this.configuration.getHost(), SecurityTokenProvider.instance.get())&&(methodChecker.algoExists(this.algorithm))) 
+			try
 			{
+				methodChecker.checkMethod(this.configuration.getHost(), SecurityTokenProvider.instance.get());
+				methodChecker.copyAlgorithms(this.algorithm); 
 				this.logger.debug("Method OK and algo exists");
-				System.out.println("Interface check ok!");
+				this.logger.debug("Interface check ok!");
-				System.out.println("Both the files exist at the correct path!");
+				this.logger.debug("Both the files exist at the correct path!");
-				
+				boolean algorithmListResult = this.svnUpdater.updateSVNAlgorithmList(this.algorithm, this.vREName,this.category, this.algorithm_type,
-				this.svnUpdater.updateSVNAlgorithmList(this.algorithm, this.vREName,this.category, this.algorithm_type,
 						this.algorithm.getFullname());
 				this.setStatusInformation(STATUS.COMPLETED);
-				sm.sendNotification(nh.getSuccessSubject() + " for "+this.algorithm.getName()+ " algorithm", nh.getSuccessBody("\n\n"+this.buildInfo()));
+				
-				return;
+				String bodyResponse = algorithmListResult ? nh.getSuccessBody("\n\n"+this.buildInfo()) : nh.getSuccessBody("\n\n"+this.buildInfo())+"\nWARNING: algorithm list could not be updated on SVN";
-		***REMOVED*** else
+				
+				sm.sendNotification(nh.getSuccessSubject() + " for "+this.algorithm.getName()+ " algorithm", bodyResponse);
+
+		***REMOVED*** catch (SVNCommitException e)
+			{
+				this.logger.error("Unable to complete the commit operation: "+e.getMessage());
+				this.setStatusInformation(STATUS.FAILED);
+				sm.sendNotification(nh.getFailedSubject() + " for "+this.algorithm.getName()+ " algorithm",
+						nh.getFailedBody(
+								"\n"+
+								"Commit operation failed for "+e.getFileName()
+										+ "the message of the SVN Server is the following:\n"+e.getSvnErrorMessage().getMessage()+"\n\n"
+								+this.buildInfo()));
+
+				
+		***REMOVED*** catch (AlgorithmException ae)
 			{
 				this.logger.debug("Operation failed");
 				this.setStatusInformation(STATUS.FAILED);
@@ -207,8 +225,8 @@ public abstract class DMPMJob {
 							"Installation completed but DataMiner Interface not working correctly or files "
 									+ this.algorithm.getName() + ".jar and " + this.algorithm.getName()
 									+ "_interface.jar not availables at the expected path")+"\n\n"+this.buildInfo());
-
 		***REMOVED***
+			
 	***REMOVED***
 ***REMOVED***
 	

src/main/java/org/gcube/dataanalysis/dataminer/poolmanager/util/CheckMethod.java

@@ -9,28 +9,50 @@ import java.util.ArrayList;
 import java.util.Arrays;
 ***REMOVED***
 ***REMOVED***
+import java.util.Properties;
 
+import org.gcube.dataanalysis.dataminer.poolmanager.clients.configuration.Configuration;
 import org.gcube.dataanalysis.dataminer.poolmanager.datamodel.Algorithm;
+import org.gcube.dataanalysis.dataminer.poolmanager.util.exception.AlgorithmException;
+import org.gcube.dataanalysis.dataminer.poolmanager.util.exception.SVNCommitException;
 ***REMOVED***
 ***REMOVED***
+import org.tmatesoft.svn.core.SVNException;
+
+import com.jcraft.jsch.Channel;
+import com.jcraft.jsch.ChannelSftp;
+import com.jcraft.jsch.JSch;
+import com.jcraft.jsch.JSchException;
+import com.jcraft.jsch.Session;
+import com.jcraft.jsch.SftpException;
 
 public abstract class CheckMethod {
 	
 ***REMOVED***
+	private Configuration configuration;
 	
-	public CheckMethod() 
+	private final String 	KNOWN_HOSTS= "~/.ssh/known_hosts",
+							PRIVATE_KEY = "~/.ssh/id_rsa",
+							SSH_USER = "root",
+							SFTP_PROTOCOL = "sftp",
+							TEMP_DIRECTORY = "tmp";
+	private final Properties sshConfig;
+	
+	public CheckMethod(Configuration configuration) 
 	{
 		this.logger = LoggerFactory.getLogger(CheckMethod.class);
+		sshConfig = new java.util.Properties();
+		sshConfig.put("StrictHostKeyChecking", "no");
 ***REMOVED***
 	
-	public boolean checkMethod(String machine, String token) throws Exception {
+	public void checkMethod(String machine, String token) throws AlgorithmException {
 		try {
 			this.logger.debug("Checking method for machine "+machine);
 			this.logger.debug("By using tocken "+token);
-			System.out.println("Machine: " + machine);
+			this.logger.debug("Machine: " + machine);
 ***REMOVED***			String getCapabilitesRequest = new String();
 ***REMOVED***			String getCapabilitesResponse = new String();
-			System.out.println("   Token: " + token);
+			this.logger.debug("   Token: " + token);
 			String request = "http:***REMOVED***" + machine
 					+ "/wps/WebProcessingService?Request=GetCapabilities&Service=WPS&gcube-token=" + token;
 			String response = machine + "___" + token + ".xml";
@@ -72,12 +94,12 @@ public abstract class CheckMethod {
 							String operatorDescription = innerLine.substring(innerLine.indexOf(">") + 1);
 							operatorDescription = operatorDescription.substring(0, operatorDescription.indexOf("<"));
 							this.logger.debug("Operator descriptor "+operatorDescription);
-							System.out.println("         " + operatorDescription);
+							this.logger.debug("         " + operatorDescription);
 							innerFlag = false;
 					***REMOVED*** else if (innerLine.contains("ows:ExceptionText")) 
 						{
 							this.logger.debug("Exception found");
-							System.out.println("         " + "error retrieving operator description");
+							this.logger.debug("         " + "error retrieving operator description");
 							innerFlag = false;
 							flag = false;
 					***REMOVED*** else
@@ -91,29 +113,152 @@ public abstract class CheckMethod {
 			
 			this.logger.debug("Operation successful");
 			fileWriter.close();
-			return true;
+
 
 	***REMOVED*** catch (Exception e) {
-			e.getMessage();
+			
-			this.logger.error("Error "+e.getMessage(),e);
+			throw new AlgorithmException("Error "+e.getMessage(),e);
-			return false;
+			
 	***REMOVED***
 ***REMOVED***
 	
 	
 
-	public abstract boolean algoExists(Algorithm algo/*, String env*/) throws Exception;
+	public void copyAlgorithms(Algorithm algo/*, String env*/) throws SVNCommitException, Exception{
+
+		this.logger.debug("Looking if algo "+algo.getName()+ " exists");
+		File file = new File(this.configuration.getGhostAlgoDirectory()+"/"+algo.getName()+".jar");
+		File file2 = new File(this.configuration.getGhostAlgoDirectory()+"/"+algo.getName()+"_interface.jar");
+		this.logger.debug("Looking for files "+file.getPath()+ " "+file.getPath());
 			
 		
-	public abstract void deleteFiles(Algorithm a/*,String env*/) throws Exception;
+		if ((this.doesExist(file.getPath()/*,env*/)) && (this.doesExist(file2.getPath()/*,env*/)))
+		{
+			this.logger.debug("Files found");
+			this.copyFromDmToSVN(file/*,env*/);
+			this.copyFromDmToSVN(file2/*,env*/);
+			this.logger.debug("Files have been copied to SVN");
+	***REMOVED***
+		else 
+		{
+			this.logger.debug("Files not found");
+			this.logger.debug("Algorithm "+algo.getName()+".jar"+ " and "+algo.getName()+"_interface.jar files are not present at the expected path");
+			throw new AlgorithmException("Algorithm "+algo.getName()+".jar"+ " and "+algo.getName()+"_interface.jar files are not present at the expected path");
+	***REMOVED***
 		
-	
+***REMOVED***
-	public abstract boolean doesExist(String path/*, String env*/) throws Exception;
 
 
 	
-	public abstract void copyFromDmToSVN(File a/*,String env*/) throws Exception;
+	public void deleteFiles(Algorithm a/*,String env*/) throws Exception
+	{
+		Session session = generateSession();
+		System.out.println("checking existing in env: " + this.configuration.getHost());
 		
+		File file = new File(this.configuration.getGhostAlgoDirectory()+"/"+a.getName()+".jar");
+		File file2 = new File(this.configuration.getGhostAlgoDirectory()+"/"+a.getName()+"_interface.jar");
+		
+		
+		System.out.println("First file is located to: "+file.getPath());
+		System.out.println("Second file is located to: "+file2.getPath());
+		
+		
+		System.out.println("session created.");
+		session.setConfig(this.sshConfig);
+		session.connect();
+
+		Channel channel = session.openChannel(SFTP_PROTOCOL);
+		channel.connect();
+		System.out.println("shell channel connected....");
+
+		ChannelSftp c = (ChannelSftp) channel;
+
+		if(doesExist(file.getPath()/*,env*/)&&(doesExist(file2.getPath()/*,env*/))){
+			
+			c.rm(file.getPath());
+			c.rm(file2.getPath());
+	    	System.out.println("Both the files have been deleted");
+	***REMOVED***
+		else System.out.println("Files not found");
+	 	channel.disconnect();
+		c.disconnect();
+		session.disconnect();
+
+***REMOVED***
+	
+	
+
+
+	public boolean doesExist(String path/*, String env*/) throws Exception {
+
+		Session session = generateSession();
+		boolean success = false;
+		session.connect();
+		Channel channel = session.openChannel(SFTP_PROTOCOL);
+		channel.connect();
+		System.out.println("shell channel connected....");
+
+		ChannelSftp c = (ChannelSftp) channel;
+
+
+		System.out.println(path);
+
+		try {
+			c.lstat(path);
+			success = true;
+	***REMOVED*** catch (SftpException e) {
+			if (e.id == ChannelSftp.SSH_FX_NO_SUCH_FILE) {
+				***REMOVED*** file doesn't exist
+				success = false;
+		***REMOVED***
+			***REMOVED***success = true; ***REMOVED*** something else went wrong
+	***REMOVED***
+		channel.disconnect();
+		c.disconnect();
+		session.disconnect();
+		this.logger.debug("Operation result "+success);
+		return success;
+
+***REMOVED***
+
+	
+	protected abstract void copyFromDmToSVN(File a) throws SVNCommitException, Exception;
+
+	
+	protected void copyFromDmToSVN(File algorithmsFile/*,String env*/,SVNUpdater svnUpdater) throws SVNException, SVNCommitException, JSchException, SftpException {
+
+		this.logger.debug("Copying algorithm file from Data Miner to SVN");
+		String fileName = algorithmsFile.getName();
+		this.logger.debug("File name "+fileName);
+		Session session = generateSession();
+		session.connect();
+		Channel channel = session.openChannel(SFTP_PROTOCOL);
+		channel.connect();
+		ChannelSftp sftp = (ChannelSftp) channel;
+		sftp.cd(this.configuration.getGhostAlgoDirectory());
+		String remoteFile = new StringBuilder(this.configuration.getGhostAlgoDirectory()).append(File.separator).append(fileName).toString();
+		this.logger.debug("Remote file "+remoteFile);
+		String localFile = new StringBuilder(File.separator).append(TEMP_DIRECTORY).append(File.separator).append(fileName).toString();
+		this.logger.debug("Local file "+localFile);
+		sftp.get(remoteFile,localFile);
+		channel.disconnect();
+		session.disconnect();
+	    File f = new File(localFile);
+		svnUpdater.updateAlgorithmFiles(f);	
+		f.delete();
+***REMOVED***
+ 
+	private Session generateSession () throws JSchException
+	{
+		JSch jsch = new JSch();
+		jsch.setKnownHosts(KNOWN_HOSTS);
+		jsch.addIdentity(PRIVATE_KEY);
+		this.logger.debug("Private Key Added.");
+		Session session = jsch.getSession(SSH_USER, this.configuration.getHost());
+		this.logger.debug("session created.");
+		session.setConfig(this.sshConfig);
+		return session;
+***REMOVED***
  
 
     

src/main/java/org/gcube/dataanalysis/dataminer/poolmanager/util/NotificationHelper.java

@@ -4,6 +4,13 @@ package org.gcube.dataanalysis.dataminer.poolmanager.util;
 
 public abstract class NotificationHelper {
   
+	private String subjectHeader;
+	
+	protected NotificationHelper (String subjectHeader)
+	{
+		this.subjectHeader = subjectHeader;
+***REMOVED***
+	
 ***REMOVED***  private Exception executionException;
 
 
@@ -17,10 +24,16 @@ public abstract class NotificationHelper {
 ***REMOVED***    this.executionException = executionException;
 ***REMOVED***  ***REMOVED***
 
-  public abstract String getSuccessSubject();
+	  public String getSuccessSubject() {
+	    return this.subjectHeader+" is SUCCESS";
+	  ***REMOVED***
 
 
-  public abstract String getFailedSubject();
+	 
+	  
+	  public String getFailedSubject() {
+	    return String.format(this.subjectHeader+" is FAILED");
+	  ***REMOVED***
 
   
   public String getSuccessBody(String info) {

src/main/java/org/gcube/dataanalysis/dataminer/poolmanager/util/SVNUpdater.java

@@ -3,6 +3,8 @@ package org.gcube.dataanalysis.dataminer.poolmanager.util;
 import java.io.ByteArrayInputStream;
 import java.io.ByteArrayOutputStream;
 import java.io.File;
+import java.io.FileInputStream;
+import java.io.FileNotFoundException;
 ***REMOVED***
 import java.text.DateFormat;
 import java.text.ParseException;
@@ -19,10 +21,14 @@ import java.util.HashSet;
 import java.util.Set;
 import java.util.TimeZone;
 
-import org.apache.commons.io.FileUtils;
 import org.gcube.dataanalysis.dataminer.poolmanager.clients.configuration.Configuration;
 import org.gcube.dataanalysis.dataminer.poolmanager.datamodel.Algorithm;
 import org.gcube.dataanalysis.dataminer.poolmanager.datamodel.Dependency;
+import org.gcube.dataanalysis.dataminer.poolmanager.util.exception.SVNCommitException;
+***REMOVED***
+***REMOVED***
+import org.tmatesoft.svn.core.SVNCommitInfo;
+import org.tmatesoft.svn.core.SVNErrorMessage;
 import org.tmatesoft.svn.core.SVNException;
 import org.tmatesoft.svn.core.SVNNodeKind;
 import org.tmatesoft.svn.core.internal.wc.SVNFileUtil;
@@ -38,11 +44,12 @@ public abstract class SVNUpdater {
 
 	private SVNRepository svnRepository;
 	private Configuration configuration;
+***REMOVED***
 
 	public SVNUpdater(Configuration configuration) throws SVNException {
 		this.configuration = configuration;
 		this.svnRepository = SVNRepositoryManager.getInstance(configuration).getSvnRepository();
-		
+		this.logger = LoggerFactory.getLogger(SVNUpdater.class);
 ***REMOVED***
 
 ***REMOVED***	public void updateRPRotoDeps(Algorithm algorithm) {
@@ -64,7 +71,10 @@ public abstract class SVNUpdater {
 	
 	private String getDependencyFile (Configuration configuration, String language)
 	{
-		switch (language) {
+		this.logger.debug("Getting dependency file for language "+language);
+		
+		switch (language) 
+		{
 		case "R":
 			return configuration.getSVNCRANDepsList();
 		case "R-blackbox":
@@ -89,14 +99,14 @@ public abstract class SVNUpdater {
 ***REMOVED***
 
 
-	public void updateSVNAlgorithmList(Algorithm algorithm, String targetVRE, String category, String algorithm_type, String user/*, String env*/)
+	public boolean  updateSVNAlgorithmList(Algorithm algorithm, String targetVRE, String category, String algorithm_type, String user/*, String env*/)
 	{
-		this.updateSVNAlgorithmList(this.configuration.getSVNAlgorithmsList(), algorithm, targetVRE, category, algorithm_type, user);
+		return this.updateSVNAlgorithmList(this.configuration.getSVNAlgorithmsList(), algorithm, targetVRE, category, algorithm_type, user);
 ***REMOVED***
 	
 
 	
-	public void updateAlgorithmFiles(File a) throws SVNException{
+	public void updateAlgorithmFiles(File a) throws SVNException, SVNCommitException{
 		***REMOVED***this.updateAlgorithmList(this.configuration.getSVNMainAlgoRepo(), a);
 		this.updateAlgorithmList(this.configuration.getRepository(), a);
 ***REMOVED***
@@ -106,83 +116,93 @@ public abstract class SVNUpdater {
 	
 	
 	
-	private void updateAlgorithmList(String svnMainAlgoRepo, File a) throws SVNException {
+	private void updateAlgorithmList(String svnMainAlgoRepo, File algorithmsFile) throws SVNException, SVNCommitException
-		try {
+	{
-			System.out.println("Adding .jar file: " + a + " to repository " + svnMainAlgoRepo);
+		this.logger.debug("Adding .jar file: " + algorithmsFile + " to repository " + svnMainAlgoRepo);
 		
-			if (fileExists(svnMainAlgoRepo+File.separator+a.getName(), -1)){
+		try
-				this.updateFile(reteriveByteArrayInputStream(a), svnMainAlgoRepo, a.getName());
+		{
+			
+			if (fileExists(svnMainAlgoRepo+File.separator+algorithmsFile.getName(), -1))
+			{
+				this.updateFile(new FileInputStream(algorithmsFile), svnMainAlgoRepo, algorithmsFile.getName());
 				
 		***REMOVED***
-			else this.putFile(reteriveByteArrayInputStream(a), svnMainAlgoRepo,a.getName());
+			else this.putFile(new FileInputStream(algorithmsFile), svnMainAlgoRepo,algorithmsFile.getName());
-		
-	***REMOVED*** catch (Exception ex) {
-			ex.printStackTrace();
 	***REMOVED*** 
-
+		catch (FileNotFoundException e)
-		finally {
+		{
-			svnRepository.closeSession();
+			this.logger.error("Temporary algorithm file not found: this exception should not happen",e);
+	***REMOVED***
+		finally
+		{
+			this.svnRepository.closeSession();
 	***REMOVED***
 ***REMOVED***
 
 	
 	
-	public void putFile(ByteArrayInputStream byteArrayInputStream, String destinationFolder, String fileName)
+	public void putFile(FileInputStream fileInputSreeam, String destinationFolder, String fileName) throws SVNException, SVNCommitException 
-		    throws SVNException {
+	{
-		
+		this.logger.debug("Putting new file on the SVN repository");
-		
 		final ISVNEditor commitEditor = svnRepository.getCommitEditor("Add algorithm to list", null);
 		commitEditor.openRoot(-1);
 		commitEditor.openDir(destinationFolder, -1);
+		String filePath = destinationFolder + "/" + fileName;
+		commitEditor.addFile(filePath, null, -1);
+		commitEditor.applyTextDelta(filePath, null);
+	    SVNDeltaGenerator deltaGenerator = new SVNDeltaGenerator();
+	    String checksum = deltaGenerator.sendDelta(filePath, fileInputSreeam, commitEditor, true);
+	    commitEditor.closeFile(filePath, checksum);
+	    commitEditor.closeDir();
+		commitEditor.closeDir();
+		SVNCommitInfo info = commitEditor.closeEdit();
+		SVNErrorMessage errorMessage = info.getErrorMessage();
 		
-		
+		if (errorMessage != null)
-		    String filePath = destinationFolder + "/" + fileName;
+		{
-
+			this.logger.error("Operation failed: "+errorMessage.getFullMessage());
-		
+			SVNCommitException exception = new SVNCommitException(errorMessage);
-		    	***REMOVED***commitEditor.openFile(filePath, -1);
+			exception.setFileName(fileName);
-		       		      
+			throw exception;
-		  
-
-		    	commitEditor.addFile(filePath, null, -1);
-		  
-		    commitEditor.applyTextDelta(filePath, null);
-		    SVNDeltaGenerator deltaGenerator = new SVNDeltaGenerator();
-		    String checksum = deltaGenerator.sendDelta(filePath, byteArrayInputStream, commitEditor, true);
-		    commitEditor.closeFile(filePath, checksum);
-		    commitEditor.closeDir();
-			commitEditor.closeDir();
-			commitEditor.closeEdit();
 	***REMOVED***
 		
-	
+		this.logger.debug("Operation completed");
-	public void updateFile(ByteArrayInputStream byteArrayInputStream, String destinationFolder, String fileName)
+***REMOVED***
-		    throws SVNException {
 	
 	
-		final ISVNEditor commitEditor = svnRepository.getCommitEditor("Add algorithm to list", null);
+	public void updateFile(FileInputStream fileInputStream, String destinationFolder, String fileName) throws SVNException, SVNCommitException  {
+		
+		this.logger.debug("Updating existing file on the SVN repository");		
+		final ISVNEditor commitEditor = svnRepository.getCommitEditor("Updating algorithm", null);
 		commitEditor.openRoot(-1);
 		commitEditor.openDir(destinationFolder, -1);
+		String filePath = destinationFolder + "/" + fileName;
+		***REMOVED*** if (fileExists(filePath, -1)) { ***REMOVED*** updating existing file
+		commitEditor.openFile(filePath, -1);
+		***REMOVED******REMOVED*** else { ***REMOVED*** creating new file
+		***REMOVED***commitEditor.addFile(filePath, null, -1);
+		***REMOVED******REMOVED***
+	    commitEditor.applyTextDelta(filePath, null);
+	    SVNDeltaGenerator deltaGenerator = new SVNDeltaGenerator();
+	    String checksum = deltaGenerator.sendDelta(filePath, fileInputStream, commitEditor, true);
+	    commitEditor.closeFile(filePath, checksum);
+	    commitEditor.closeDir();
+		commitEditor.closeDir();
+		SVNCommitInfo info = commitEditor.closeEdit();
+		SVNErrorMessage errorMessage = info.getErrorMessage();
 		
-		
+		if (errorMessage != null)
-		    String filePath = destinationFolder + "/" + fileName;
+		{
-
+			this.logger.error("Operation failed: "+errorMessage.getFullMessage());
-		   ***REMOVED*** if (fileExists(filePath, -1)) { ***REMOVED*** updating existing file
+			SVNCommitException exception = new SVNCommitException(errorMessage);
-		      
+			exception.setFileName(fileName+" to be updated");
-		    	commitEditor.openFile(filePath, -1);
+			throw exception;
-		       		      
-		    ***REMOVED******REMOVED*** else { ***REMOVED*** creating new file
-
-		    	***REMOVED***commitEditor.addFile(filePath, null, -1);
-		    ***REMOVED******REMOVED***
-		    commitEditor.applyTextDelta(filePath, null);
-		    SVNDeltaGenerator deltaGenerator = new SVNDeltaGenerator();
-		    String checksum = deltaGenerator.sendDelta(filePath, byteArrayInputStream, commitEditor, true);
-		    commitEditor.closeFile(filePath, checksum);
-		    commitEditor.closeDir();
-			commitEditor.closeDir();
-			commitEditor.closeEdit();
 	***REMOVED***
 		
+		this.logger.debug("Operation completed");
+***REMOVED***
+	
 	
 	
 	
@@ -197,15 +217,19 @@ public abstract class SVNUpdater {
 	
 	
 	
-	public static ByteArrayInputStream reteriveByteArrayInputStream(File file) throws IOException {
+***REMOVED***	public static ByteArrayInputStream reteriveByteArrayInputStream(File file) throws IOException 
-				
+***REMOVED***	{
-	    return new ByteArrayInputStream(FileUtils.readFileToByteArray(file));
 ***REMOVED***				
+***REMOVED***	    return new ByteArrayInputStream(FileUtils.readFileToByteArray(file));
+***REMOVED******REMOVED***
 	
 	
-	private void updateSVNAlgorithmList(String file, Algorithm algorithm, String targetVRE, String category, String algorithm_type, String user/*, String env*/) {
+	private boolean updateSVNAlgorithmList(String file, Algorithm algorithm, String targetVRE, String category, String algorithm_type, String user/*, String env*/) 
+	{
+		boolean response = false;
+		
 		try {
-			System.out.println("Updating algorithm list: " + file);
+			this.logger.debug("Updating algorithm list: " + file);
 			final ByteArrayOutputStream byteArrayOutputStream = new ByteArrayOutputStream();
 			svnRepository.getFile(file, SVNRepository.INVALID_REVISION, null, byteArrayOutputStream);
 			String lines[] = byteArrayOutputStream.toString().split("\\r?\\n");
@@ -246,15 +270,30 @@ public abstract class SVNUpdater {
 			final String checksum = deltaGenerator.sendDelta(file, new ByteArrayInputStream(originalContents), 0,
 					new ByteArrayInputStream(bytes), commitEditor, true);
 			commitEditor.closeFile(file, checksum);
-			commitEditor.closeEdit();
+			SVNCommitInfo info = commitEditor.closeEdit();
+			SVNErrorMessage errorMessage = info.getErrorMessage();
 			
-	***REMOVED*** catch (Exception ex) {
+			if (errorMessage != null)
-			ex.printStackTrace();
+			{
+				this.logger.error("Operation failed: "+errorMessage.getFullMessage());
+				response = false;
+		***REMOVED***
+			else response = true;
+			
+
+	***REMOVED*** 
+		catch (Exception ex) 
+		{
+			this.logger.error("Unable to commit algorithm list",ex);
+			response = false;
 	***REMOVED***
 
-		finally {
+		finally 
+		{
 			svnRepository.closeSession();
 	***REMOVED***
+		
+		return response;
 ***REMOVED***
 
 

src/main/java/org/gcube/dataanalysis/dataminer/poolmanager/util/SendMail.java

@@ -25,36 +25,51 @@ import org.gcube.common.authorization.library.AuthorizationEntry;
 ***REMOVED***
 import org.gcube.common.resources.gcore.GCoreEndpoint;
 ***REMOVED***
+import org.gcube.dataanalysis.dataminer.poolmanager.clients.configuration.DMPMClientConfiguratorManager;
 import org.gcube.dataanalysis.dataminer.poolmanager.util.exception.EMailException;
 import org.gcube.resources.discovery.client.api.DiscoveryClient;
 import org.gcube.resources.discovery.client.queries.api.SimpleQuery;
 import org.json.JSONArray;
 import org.json.JSONObject;
+***REMOVED***
+***REMOVED***
 
 
 public class SendMail  {
 
+***REMOVED***
+	private final String 	WRITE_MESSAGE_ADDRESS_PATH ="messages/writeMessageToUsers?gcube-token=",
+							USER_ROLES_ADDRESS_PATH ="2/users/get-usernames-by-role?role-name=DataMiner-Manager&gcube-token=",
+							ENCODING = "UTF-8",
+							SENDER_PARAMETER_FORMAT = "&sender=dataminer&recipients=%s&subject=%s&body=%s",
+							SOCIAL_SERVICE_QUERY_CONDITION ="$resource/Profile/ServiceName/text() eq 'SocialNetworking'",
+							SOCIAL_SERVICE_URI="jersey-servlet",
+							JSON_MIME_TYPE = "application/json";
+	
 	public SendMail() {
-		***REMOVED*** TODO Auto-generated constructor stub
+		this.logger = LoggerFactory.getLogger(SendMail.class);
 ***REMOVED***
 
-	public void sendNotification(String subject, String body) throws EMailException {
+	private String getRequestMessage (String addressPath)
-
+	{
-		***REMOVED***AnalysisLogger.getLogger().debug("Emailing System->Starting request of email in scope " + ScopeProvider.instance.get());
-
-		***REMOVED***String serviceAddress = InfraRetrieval.findEmailingSystemAddress(ScopeProvider.instance.get());
-
-		
-		
 		String serviceAddress = this.getSocialService();
+		StringBuilder requestMessageBuilder = new StringBuilder(serviceAddress);
+		
+		if (!serviceAddress.endsWith("/")) requestMessageBuilder.append('/');
+		
+		requestMessageBuilder.append(addressPath).append(SecurityTokenProvider.instance.get());
+		String requestForMessage = requestMessageBuilder.toString();
+		this.logger.debug("Request "+requestForMessage);
+		return requestForMessage;
+***REMOVED***
+	
+	public void sendNotification(String subject, String body) throws EMailException 
+	{
+		this.logger.debug("Sending mail notification for "+subject);
+		this.logger.debug("Body "+body);
 
 		
-		if (!serviceAddress.endsWith("/"))
-			serviceAddress = serviceAddress + "/";
 
-		String requestForMessage = serviceAddress + "messages/writeMessageToUsers" + "?gcube-token="
-				+ SecurityTokenProvider.instance.get();
-		requestForMessage = requestForMessage.replace("http:***REMOVED***", "https:***REMOVED***").replace(":80", ""); 
 
 		***REMOVED***AnalysisLogger.getLogger().debug("Emailing System->Request url is going to be " + requestForMessage);
 
@@ -62,16 +77,19 @@ public class SendMail  {
 		
 		try
 		{
-			subject = URLEncoder.encode(subject, "UTF-8");
+			subject = URLEncoder.encode(subject, ENCODING);
-			body = URLEncoder.encode(body, "UTF-8");
+			body = URLEncoder.encode(body, ENCODING);
 	***REMOVED***
 		catch (UnsupportedEncodingException e)
 		{
 			throw new EMailException(e);
 	***REMOVED***
 
-		String requestParameters = "&sender=dataminer&recipients=" + this.getAdmins() + "&subject=" + subject + "&body="
+		String requestForMessage = getRequestMessage(WRITE_MESSAGE_ADDRESS_PATH);
-				+ body;
+		requestForMessage = requestForMessage.replace("http:***REMOVED***", "https:***REMOVED***").replace(":80", ""); 
+		
+		String requestParameters = String.format(SENDER_PARAMETER_FORMAT, this.getAdmins(), subject , body);
+
 		
 		String response = this.sendPostRequest(requestForMessage, requestParameters);
 		***REMOVED***AnalysisLogger.getLogger().debug("Emailing System->Emailing response OK ");
@@ -88,7 +106,7 @@ public class SendMail  {
 
 	public String username(String token) throws ObjectNotFound, Exception {
 		AuthorizationEntry entry = authorizationService().get(token);
-		System.out.println(entry.getClientInfo().getId());
+		this.logger.debug(entry.getClientInfo().getId());
 		return entry.getClientInfo().getId();
 ***REMOVED***
 
@@ -115,10 +133,10 @@ public class SendMail  {
 	
 	public String getSocialService() {
 		SimpleQuery query = queryFor(GCoreEndpoint.class);
-		query.addCondition("$resource/Profile/ServiceName/text() eq 'SocialNetworking'");
+		query.addCondition(SOCIAL_SERVICE_QUERY_CONDITION);
 		DiscoveryClient<GCoreEndpoint> client = clientFor(GCoreEndpoint.class);
 		List<GCoreEndpoint> resources = client.submit(query);
-		String a = resources.get(0).profile().endpointMap().get("jersey-servlet").uri().toString();
+		String a = resources.get(0).profile().endpointMap().get(SOCIAL_SERVICE_URI).uri().toString();
 		return a;
 ***REMOVED***
 	
@@ -172,21 +190,20 @@ public class SendMail  {
 		***REMOVED***GcoreEndpointReader ep = new GcoreEndpointReader(ScopeProvider.instance.get());
  
 		
-		String serviceAddress = this.getSocialService();
+		String serviceAddress = getRequestMessage(USER_ROLES_ADDRESS_PATH);
 		***REMOVED***String serviceAddress = InfraRetrieval.findEmailingSystemAddress(ScopeProvider.instance.get());
 		
 		
 		***REMOVED***String serviceAddress = ep.getResourceEntyName();***REMOVED***"https:***REMOVED***socialnetworking1.d4science.org/social-networking-library-ws/rest/";
-		serviceAddress = serviceAddress.endsWith("/") ? serviceAddress : serviceAddress + "/";
+***REMOVED***		serviceAddress = serviceAddress.endsWith("/") ? serviceAddress : serviceAddress + "/";
-		serviceAddress+=  "2/users/get-usernames-by-role?";
+***REMOVED***		serviceAddress+=  "2/users/get-usernames-by-role?role-name=DataMiner-Manager&gcube-token=" + SecurityTokenProvider.instance.get();
-		serviceAddress+= "role-name=DataMiner-Manager" + "&gcube-token=" + SecurityTokenProvider.instance.get();
  
-		System.out.println("Url is " + serviceAddress);
+		this.logger.debug("Admin roles url is " + serviceAddress);
  
 		CloseableHttpClient client = HttpClientBuilder.create().build();
 		HttpGet getReq = new HttpGet(serviceAddress);
-		getReq.setHeader("accept", "application/json");
+		getReq.setHeader("accept", JSON_MIME_TYPE);
-		getReq.setHeader("content-type", "application/json");
+		getReq.setHeader("content-type", JSON_MIME_TYPE);
 		System.out.println(EntityUtils.toString(client.execute(getReq).getEntity()));
 		
 		return EntityUtils.toString(client.execute(getReq).getEntity());
@@ -210,7 +227,7 @@ public class SendMail  {
 	***REMOVED***
 		return s.toString().replace("[", "").replace("]", "");
 	***REMOVED***
-		catch(Exception a){return "ciro.formisano, lucio.lelii, roberto.cirillo, gianpaolo.coro, giancarlo.panichi, scarponi"; ***REMOVED***
+		catch(Exception a){return DMPMClientConfiguratorManager.getInstance().getDefaultAdmins(); ***REMOVED***
 		
 	***REMOVED***
 		
@@ -240,6 +257,7 @@ public class SendMail  {
 
 
 	public static void main(String[] args) throws Exception {
+
 	***REMOVED***ScopeProvider.instance.set("/d4science.research-infrastructures.eu/gCubeApps/RPrototypingLab");
 	***REMOVED***SecurityTokenProvider.instance.set("3a23bfa4-4dfe-44fc-988f-194b91071dd2-843339462");
 

src/main/java/org/gcube/dataanalysis/dataminer/poolmanager/util/exception/AlgorithmException.java

@@ -0,0 +1,26 @@
+package org.gcube.dataanalysis.dataminer.poolmanager.util.exception;
+
+public class AlgorithmException extends Exception {
+
+	/**
+	 * 
+	 */
+	private static final long serialVersionUID = -5678597187512954288L;
+
+	public AlgorithmException ()
+	{
+		super ();
+***REMOVED***
+
+	public AlgorithmException (String message)
+	{
+		super (message);
+***REMOVED***
+	
+	public AlgorithmException (String message, Throwable cause)
+	{
+		super (message, cause);
+***REMOVED***
+
+	
+***REMOVED***

src/main/java/org/gcube/dataanalysis/dataminer/poolmanager/util/exception/SVNCommitException.java

@@ -0,0 +1,41 @@
+package org.gcube.dataanalysis.dataminer.poolmanager.util.exception;
+
+import org.tmatesoft.svn.core.SVNErrorMessage;
+
+public class SVNCommitException extends Exception {
+
+	/**
+	 * 
+	 */
+	private static final long serialVersionUID = -5225403308313619585L;
+
+	private SVNErrorMessage svnErrorMessage;
+
+	private String fileName;
+	
+	public SVNCommitException(SVNErrorMessage errorMessage) {
+		super ("Unable to commit");
+		this.svnErrorMessage = errorMessage;
+***REMOVED***
+
+	public SVNCommitException(String message,SVNErrorMessage errorMessage) {
+		super (message);
+		this.svnErrorMessage = errorMessage;
+***REMOVED***
+	
+	public SVNErrorMessage getSvnErrorMessage() {
+		return svnErrorMessage;
+***REMOVED***
+	
+	public void setFileName (String fileName)
+	{
+		this.fileName = fileName;
+***REMOVED***
+	
+	public String getFileName ()
+	{
+		return this.fileName;
+***REMOVED***
+	
+	
+***REMOVED***

src/main/java/org/gcube/dataanalysis/dataminer/poolmanager/util/impl/CheckMethodProduction.java

@@ -2,202 +2,28 @@ package org.gcube.dataanalysis.dataminer.poolmanager.util.impl;
 
 import java.io.File;
 
-import org.gcube.dataanalysis.dataminer.poolmanager.clients.configuration.Configuration;
 import org.gcube.dataanalysis.dataminer.poolmanager.clients.configuration.DMPMClientConfiguratorManager;
-import org.gcube.dataanalysis.dataminer.poolmanager.datamodel.Algorithm;
 import org.gcube.dataanalysis.dataminer.poolmanager.util.CheckMethod;
-import org.gcube.dataanalysis.dataminer.poolmanager.util.SVNUpdater;
+import org.gcube.dataanalysis.dataminer.poolmanager.util.exception.SVNCommitException;
-***REMOVED***
+import org.tmatesoft.svn.core.SVNException;
-***REMOVED***
 
-import com.jcraft.jsch.Channel;
+import com.jcraft.jsch.JSchException;
-import com.jcraft.jsch.ChannelSftp;
-import com.jcraft.jsch.JSch;
-import com.jcraft.jsch.Session;
 import com.jcraft.jsch.SftpException;
 
 public class CheckMethodProduction extends CheckMethod{
 
-***REMOVED***
 
 	public CheckMethodProduction() 
 	{
-		this.logger = LoggerFactory.getLogger(CheckMethodProduction.class);
+		super (DMPMClientConfiguratorManager.getInstance().getProductionConfiguration());
-***REMOVED***
-	
-
-	
-
-	@Override
-	public boolean algoExists(Algorithm algo/*, String env*/) throws Exception{
-
-		this.logger.debug("Looking if algo "+algo.getName()+ " exists in production");
-		Configuration productionConfiguration = DMPMClientConfiguratorManager.getInstance().getProductionConfiguration(); 
-		File file = new File(productionConfiguration.getGhostAlgoDirectory()+"/"+algo.getName()+".jar");
-		File file2 = new File(productionConfiguration.getGhostAlgoDirectory()+"/"+algo.getName()+"_interface.jar");
-
-		
-		System.out.println("First file is located to: "+file.getPath());
-		System.out.println("Second file is located to: "+file2.getPath());
-		
-		
-		if ((this.doesExist(file.getPath()/*,env*/)) && (this.doesExist(file2.getPath()/*,env*/))){
-			this.copyFromDmToSVN(file/*,env*/);
-			this.copyFromDmToSVN(file2/*,env*/);
-
-
-			return true;
-	***REMOVED***
-		else 
-			System.out.println("Algorithm "+algo.getName()+".jar"+ " and "+algo.getName()+"_interface.jar files are not present at the expected path");
-			return false;		
-***REMOVED***
-	
-	@Override
-	public void deleteFiles(Algorithm a/*,String env*/) throws Exception
-	{
-		JSch jsch = new JSch();
-		Session session = null;
-		Channel channel = null;
-		ChannelSftp c = null;
-		Configuration productionConfiguration = DMPMClientConfiguratorManager.getInstance().getProductionConfiguration(); 
-		System.out.println("checking existing in env: " + productionConfiguration.getHost());
-		
-		File file = new File(productionConfiguration.getGhostAlgoDirectory()+"/"+a.getName()+".jar");
-		File file2 = new File(productionConfiguration.getGhostAlgoDirectory()+"/"+a.getName()+"_interface.jar");
-		
-		
-		System.out.println("First file is located to: "+file.getPath());
-		System.out.println("Second file is located to: "+file2.getPath());
-		
-		
-		jsch.setKnownHosts("~/.ssh/known_hosts");
-		String privateKey = "~/.ssh/id_rsa";
-
-		jsch.addIdentity(privateKey);
-		System.out.println("Private Key Added.");
-
-		session = jsch.getSession("root", productionConfiguration.getHost());
-		System.out.println("session created.");
-
-		java.util.Properties config = new java.util.Properties();
-		config.put("StrictHostKeyChecking", "no");
-
-		session.setConfig(config);
-		session.connect();
-
-		channel = session.openChannel("sftp");
-		channel.connect();
-		System.out.println("shell channel connected....");
-
-		c = (ChannelSftp) channel;
-
-		if(doesExist(file.getPath()/*,env*/)&&(doesExist(file2.getPath()/*,env*/))){
-			
-			c.rm(file.getPath());
-			c.rm(file2.getPath());
-	    	System.out.println("Both the files have been deleted");
-	***REMOVED***
-		else System.out.println("Files not found");
-	 	channel.disconnect();
-		c.disconnect();
-		session.disconnect();
 		
 ***REMOVED***
 	
 	
 	@Override
-	public boolean doesExist(String path/*, String env*/) throws Exception {
+	protected void copyFromDmToSVN(File a) throws SVNException, SVNCommitException, JSchException, SftpException  {
-		JSch jsch = new JSch();
+		super.copyFromDmToSVN(a, new SVNUpdaterProduction());
-		Session session = null;
-		Channel channel = null;
-		ChannelSftp c = null;
-		boolean success = false;
-		Configuration productionConfiguration = DMPMClientConfiguratorManager.getInstance().getProductionConfiguration(); 
 		
-
-		jsch.setKnownHosts("~/.ssh/known_hosts");
-		String privateKey = "~/.ssh/id_rsa";
-
-		jsch.addIdentity(privateKey);
-		System.out.println("Private Key Added.");
-
-		session = jsch.getSession("root", productionConfiguration.getHost());
-		System.out.println("session created.");
-
-		java.util.Properties config = new java.util.Properties();
-		config.put("StrictHostKeyChecking", "no");
-
-		session.setConfig(config);
-		session.connect();
-
-		channel = session.openChannel("sftp");
-		channel.connect();
-		System.out.println("shell channel connected....");
-
-		c = (ChannelSftp) channel;
-
-
-		System.out.println(path);
-
-		try {
-			c.lstat(path);
-			success = true;
-	***REMOVED*** catch (SftpException e) {
-			if (e.id == ChannelSftp.SSH_FX_NO_SUCH_FILE) {
-				***REMOVED*** file doesn't exist
-				success = false;
-		***REMOVED***
-			***REMOVED***success = true; ***REMOVED*** something else went wrong
-	***REMOVED***
-		channel.disconnect();
-		c.disconnect();
-		session.disconnect();
-		return success;
-
-***REMOVED***
-	
-	
-	@Override
-	public void copyFromDmToSVN(File a/*,String env*/) throws Exception {
-		JSch jsch = new JSch();
-		Session session = null;
-		SVNUpdater svnUpdater = new SVNUpdaterProduction();
-		Configuration productionConfiguration = DMPMClientConfiguratorManager.getInstance().getProductionConfiguration(); 
-
-		jsch.setKnownHosts("~/.ssh/known_hosts");
-		String privateKey = "~/.ssh/id_rsa";
-
-		jsch.addIdentity(privateKey);
-		System.out.println("Private Key Added.");
-
-		session = jsch.getSession("root", productionConfiguration.getHost());
-		System.out.println("session created.");
-
-		java.util.Properties config = new java.util.Properties();
-		config.put("StrictHostKeyChecking", "no");
-
-		session.setConfig(config);
-		session.connect();
-		
-		Channel channel = session.openChannel("sftp");
-		channel.connect();
-
-		ChannelSftp sftp = (ChannelSftp) channel;
-
-		sftp.cd(productionConfiguration.getGhostAlgoDirectory());
-		
-		System.out.println("REMOTE : "+productionConfiguration.getGhostAlgoDirectory()+"/"+a.getName());
-		System.out.println("LOCAL : /tmp/"+a.getName());
-		
-		sftp.get(productionConfiguration.getGhostAlgoDirectory()+"/"+a.getName(),"/tmp/"+a.getName());
-
-		channel.disconnect();
-		session.disconnect();
-	
-	    File f = new File("/tmp/"+a.getName());
-		svnUpdater.updateAlgorithmFiles(f);	
-		f.delete();
 ***REMOVED***
     
 
@@ -242,8 +68,15 @@ public class CheckMethodProduction extends CheckMethod{
 ***REMOVED***System.out.println(a.checkMethod("dataminer-proto-ghost.d4science.org",
 	***REMOVED***	"3a23bfa4-4dfe-44fc-988f-194b91071dd2-843339462"));
 
-System.out.println(a.checkMethod("dataminer-ghost-d.dev.d4science.org",
+	try
-	"708e7eb8-11a7-4e9a-816b-c9ed7e7e99fe-98187548"));
+	{
+		a.checkMethod("dataminer-ghost-d.dev.d4science.org",
+				"708e7eb8-11a7-4e9a-816b-c9ed7e7e99fe-98187548");
+***REMOVED*** catch (Exception e)
+	{
+		e.printStackTrace();
+***REMOVED***
+
 
 
 ***REMOVED***Algorithm aa = new Algorithm();

src/main/java/org/gcube/dataanalysis/dataminer/poolmanager/util/impl/CheckMethodStaging.java

@@ -2,216 +2,32 @@ package org.gcube.dataanalysis.dataminer.poolmanager.util.impl;
 
 import java.io.File;
 
-import org.gcube.dataanalysis.dataminer.poolmanager.clients.configuration.Configuration;
 import org.gcube.dataanalysis.dataminer.poolmanager.clients.configuration.DMPMClientConfiguratorManager;
-import org.gcube.dataanalysis.dataminer.poolmanager.datamodel.Algorithm;
 import org.gcube.dataanalysis.dataminer.poolmanager.util.CheckMethod;
-import org.gcube.dataanalysis.dataminer.poolmanager.util.SVNUpdater;
-***REMOVED***
-***REMOVED***
-
-import com.jcraft.jsch.Channel;
-import com.jcraft.jsch.ChannelSftp;
-import com.jcraft.jsch.JSch;
-import com.jcraft.jsch.Session;
-import com.jcraft.jsch.SftpException;
 
 public class CheckMethodStaging extends CheckMethod{
 
-***REMOVED***
 
 	public CheckMethodStaging() 
 	{
-		this.logger = LoggerFactory.getLogger(CheckMethodStaging.class);
+		super (DMPMClientConfiguratorManager.getInstance().getStagingConfiguration());
 ***REMOVED***
 	
 
 	
-	@Override
-	public boolean algoExists(Algorithm algo/*, String env*/) throws Exception{
-
-		this.logger.debug("Looking if algo "+algo.getName()+ " exists");
-		Configuration stagingConfiguration = DMPMClientConfiguratorManager.getInstance().getStagingConfiguration(); 
-		File file = new File(stagingConfiguration.getGhostAlgoDirectory()+"/"+algo.getName()+".jar");
-		File file2 = new File(stagingConfiguration.getGhostAlgoDirectory()+"/"+algo.getName()+"_interface.jar");
-		this.logger.debug("Looking for files "+file.getPath()+ " "+file.getPath());
-		
-		System.out.println("First file is located to: "+file.getPath());
-		System.out.println("Second file is located to: "+file2.getPath());
 
 	
-		if ((this.doesExist(file.getPath()/*,env*/)) && (this.doesExist(file2.getPath()/*,env*/)))
-		{
-			this.logger.debug("Files found");
-			this.copyFromDmToSVN(file/*,env*/);
-			this.copyFromDmToSVN(file2/*,env*/);
-			System.out.println("Files have been copied to SVN");
 
 	
-			return true;
-	***REMOVED***
-		else 
-		{
-			this.logger.debug("Files not found");
-			System.out.println("Algorithm "+algo.getName()+".jar"+ " and "+algo.getName()+"_interface.jar files are not present at the expected path");
-			return false;
-	***REMOVED***
 
-***REMOVED***
+
 
 	
 
 	@Override
-	public void deleteFiles(Algorithm a/*,String env*/) throws Exception{
+	protected void copyFromDmToSVN(File a)  throws Exception{
-		JSch jsch = new JSch();
+		super.copyFromDmToSVN(a, new SVNUpdaterStaging());
-		Session session = null;
-		Channel channel = null;
-		ChannelSftp c = null;
-		Configuration stagingConfiguration = DMPMClientConfiguratorManager.getInstance().getStagingConfiguration(); 
-		System.out.println("checking existing in env: " + stagingConfiguration.getHost());
 		
-		File file = new File(stagingConfiguration.getGhostAlgoDirectory()+"/"+a.getName()+".jar");
-		File file2 = new File(stagingConfiguration.getGhostAlgoDirectory()+"/"+a.getName()+"_interface.jar");
-		
-		
-		System.out.println("First file is located to: "+file.getPath());
-		System.out.println("Second file is located to: "+file2.getPath());
-		
-		
-		jsch.setKnownHosts("~/.ssh/known_hosts");
-		String privateKey = "~/.ssh/id_rsa";
-
-		jsch.addIdentity(privateKey);
-		System.out.println("Private Key Added.");
-
-		session = jsch.getSession("root", stagingConfiguration.getHost());
-		System.out.println("session created.");
-
-		java.util.Properties config = new java.util.Properties();
-		config.put("StrictHostKeyChecking", "no");
-
-		session.setConfig(config);
-		session.connect();
-
-		channel = session.openChannel("sftp");
-		channel.connect();
-		System.out.println("shell channel connected....");
-
-		c = (ChannelSftp) channel;
-
-		if(doesExist(file.getPath()/*,env*/)&&(doesExist(file2.getPath()/*,env*/))){
-			
-			c.rm(file.getPath());
-			c.rm(file2.getPath());
-	    	System.out.println("Both the files have been deleted");
-	***REMOVED***
-		else System.out.println("Files not found");
-	 	channel.disconnect();
-		c.disconnect();
-		session.disconnect();
-
-***REMOVED***
-
-	
-	@Override
-	public boolean doesExist(String path/*, String env*/) throws Exception {
-		this.logger.debug("Looking if file "+path + " exists");
-		JSch jsch = new JSch();
-		Session session = null;
-		Channel channel = null;
-		ChannelSftp c = null;
-		boolean success = false;
-		Configuration stagingConfiguration = DMPMClientConfiguratorManager.getInstance().getStagingConfiguration(); 
-		jsch.setKnownHosts("~/.ssh/known_hosts");
-		String privateKey = "~/.ssh/id_rsa";
-
-		jsch.addIdentity(privateKey);
-		System.out.println("Private Key Added.");
-
-		this.logger.debug("Staging configuration host "+stagingConfiguration.getHost());
-		session = jsch.getSession("root",stagingConfiguration.getHost() );
-		System.out.println("session created.");
-
-		java.util.Properties config = new java.util.Properties();
-		config.put("StrictHostKeyChecking", "no");
-
-		session.setConfig(config);
-		session.connect();
-
-		channel = session.openChannel("sftp");
-		channel.connect();
-		System.out.println("shell channel connected....");
-
-		c = (ChannelSftp) channel;
-
-		***REMOVED***SftpATTRS is = null;
-		System.out.println(path);
-
-		try {			
-			c.lstat(path);
-			this.logger.debug("File found");
-			success = true;
-	***REMOVED*** catch (SftpException e) 
-		{
-			this.logger.error("File not found",e);
-			
-			if (e.id == ChannelSftp.SSH_FX_NO_SUCH_FILE) 
-			{
-				***REMOVED*** file doesn't exist
-				success = false;
-		***REMOVED***
-			***REMOVED***success = true; ***REMOVED*** something else went wrong
-	***REMOVED***
-		channel.disconnect();
-		c.disconnect();
-		session.disconnect();
-		this.logger.debug("Operation result "+success);
-		return success;
-
-***REMOVED***
-	
-
-	@Override
-	public void copyFromDmToSVN(File a/*,String env*/) throws Exception {
-		JSch jsch = new JSch();
-		Session session = null;
-	    SVNUpdater svnUpdater = new SVNUpdaterStaging();
-		Configuration stagingConfiguration = DMPMClientConfiguratorManager.getInstance().getStagingConfiguration(); 
-
-
-		jsch.setKnownHosts("~/.ssh/known_hosts");
-		String privateKey = "~/.ssh/id_rsa";
-
-		jsch.addIdentity(privateKey);
-		System.out.println("Private Key Added.");
-
-		session = jsch.getSession("root", stagingConfiguration.getHost());
-		System.out.println("session created.");
-
-		java.util.Properties config = new java.util.Properties();
-		config.put("StrictHostKeyChecking", "no");
-
-		session.setConfig(config);
-		session.connect();
-		
-		Channel channel = session.openChannel("sftp");
-		channel.connect();
-
-		ChannelSftp sftp = (ChannelSftp) channel;
-
-		sftp.cd(stagingConfiguration.getGhostAlgoDirectory());
-		
-		System.out.println("REMOTE : "+stagingConfiguration.getGhostAlgoDirectory()+"/"+a.getName());
-		System.out.println("LOCAL : /tmp/"+a.getName());
-		
-		sftp.get(stagingConfiguration.getGhostAlgoDirectory()+"/"+a.getName(),"/tmp/"+a.getName());
-
-		channel.disconnect();
-		session.disconnect();
-	
-	    File f = new File("/tmp/"+a.getName());
-		svnUpdater.updateAlgorithmFiles(f);	
-		f.delete();
 ***REMOVED***
 
  
@@ -258,8 +74,15 @@ public class CheckMethodStaging extends CheckMethod{
 ***REMOVED***System.out.println(a.checkMethod("dataminer-proto-ghost.d4science.org",
 	***REMOVED***	"3a23bfa4-4dfe-44fc-988f-194b91071dd2-843339462"));
 
-System.out.println(a.checkMethod("dataminer-ghost-d.dev.d4science.org",
+	try
-	"708e7eb8-11a7-4e9a-816b-c9ed7e7e99fe-98187548"));
+	{
+		a.checkMethod("dataminer-ghost-d.dev.d4science.org",
+				"708e7eb8-11a7-4e9a-816b-c9ed7e7e99fe-98187548");
+***REMOVED*** catch (Exception e)
+	{
+		e.printStackTrace();
+***REMOVED***
+
 
 
 ***REMOVED***Algorithm aa = new Algorithm();

src/main/java/org/gcube/dataanalysis/dataminer/poolmanager/util/impl/NotificationHelperProduction.java

@@ -8,23 +8,12 @@ public class NotificationHelperProduction extends NotificationHelper{
   
 ***REMOVED***  private Exception executionException;
 
-  
+	public NotificationHelperProduction() {
-  private String getSubjectHeader() {
+		super ("[DataMinerGhostProductionInstallationRequestReport]");
-	    return "[DataMinerGhostProductionInstallationRequestReport]";
+***REMOVED***
-	  ***REMOVED***
-
-  @Override
-  public String getSuccessSubject() {
-    return this.getSubjectHeader()+" is SUCCESS";
-  ***REMOVED***
   
 
 
-  @Override
-  public String getFailedSubject() {
-    return String.format(this.getSubjectHeader()+" is FAILED");
-  ***REMOVED***
-
 
   
 ***REMOVED***

src/main/java/org/gcube/dataanalysis/dataminer/poolmanager/util/impl/NotificationHelperStaging.java

@@ -8,25 +8,11 @@ public class NotificationHelperStaging extends NotificationHelper {
   
 ***REMOVED***  private Exception executionException;
 
+ public NotificationHelperStaging() {
+	 super ("[DataMinerGhostStagingInstallationRequestReport]");
+ ***REMOVED***
  	
 
-  private String getSubjectHeader() {
-    return "[DataMinerGhostStagingInstallationRequestReport]";
-  ***REMOVED***
-
-
-  @Override
-  public String getSuccessSubject() {
-    return this.getSubjectHeader()+" is SUCCESS";
-  ***REMOVED***
-
-
- 
-  
-  @Override
-  public String getFailedSubject() {
-    return String.format(this.getSubjectHeader()+" is FAILED");
-  ***REMOVED***
 
   
 ***REMOVED***

src/main/resources/default.admins

@@ -0,0 +1,6 @@
+1=ciro.formisano
+2=lucio.lelii
+3=roberto.cirillo
+4=gianpaolo.coro
+5=giancarlo.panichi
+6=scarponi