274 lines
8.0 KiB
Java
274 lines
8.0 KiB
Java
package org.gcube.dataaccess.algorithms.test.regressiontest;
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import java.util.List;
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import org.gcube.contentmanagement.lexicalmatcher.utils.AnalysisLogger;
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import org.gcube.dataanalysis.ecoengine.configuration.AlgorithmConfiguration;
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import org.gcube.dataanalysis.ecoengine.datatypes.StatisticalType;
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import org.gcube.dataanalysis.ecoengine.interfaces.ComputationalAgent;
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import org.gcube.dataanalysis.ecoengine.processing.factories.TransducerersFactory;
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import org.gcube.dataanalysis.ecoengine.test.regression.Regressor;
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public class RegressionRandomSampleOnTable {
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// static AlgorithmConfiguration[] configs = { testPostgres1(),
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// testPostgis(), testMysql1(),testMysql2(), NullInputValue1(),
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// NullInputValue2(), NullInputValue3(), NullInputValue4()};
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// static String[] algorithms = { "Postgres1", "Postgis", "Mysql1",
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// "Mysql2", "NullInputValue1", "NullInputValue2", "NullInputValue3",
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// "NullInputValue4"};
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static AlgorithmConfiguration[] configs = { testMysql1() };
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static String[] algorithms = { "Postgres1" };
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public static void main(String[] args) throws Exception {
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// System.out.println("TEST 1");
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for (int i = 0; i < algorithms.length; i++) {
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AnalysisLogger.getLogger().debug("Executing:" + algorithms[i]);
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// ComputationalAgent trans = new WPSProcess(wps, algorithms[i]);
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List<ComputationalAgent> trans = null;
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trans = TransducerersFactory.getTransducerers(configs[i]);
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trans.get(0).init();
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// trans.setConfiguration(configs[i]);
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// trans.init();
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Regressor.process(trans.get(0));
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StatisticalType st = trans.get(0).getOutput();
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// Print Result
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AnalysisLogger.getLogger().debug("ST:" + st);
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trans = null;
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}
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}
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// Posgresql database
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private static AlgorithmConfiguration testPostgres1() {
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System.out.println("TEST 1: Postgres table without rows");
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AlgorithmConfiguration config = Regressor.getConfig();
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config.setAgent("RANDOMSAMPLEONTABLE");
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// A test with a database postgres
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// config.setParam("ResourceName", "GP DB");
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//
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// config.setParam("DatabaseName", "aquamapsdb");
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// config.setParam("SchemaName", "public");
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// config.setParam("TableName", "area"); // it has not rows
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// config.setParam("ResourceName", "StatisticalManagerDataBase");
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// config.setParam("DatabaseName", "testdb");
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// config.setParam("SchemaName", "public");
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// config.setParam("TableName", "hcaf_d");
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// // config.setParam("TableName",
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// "hspec_id_3f4c79fa_442e_42ba_9344_1b3e64dc3326");
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// config.setParam("TableName",
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// "hspec_id_c8e87e16_a0b4_4f9b_b48e_f1cf60ab104c");
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// // config.setParam("TableName",
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// "generic_id037d302d_2ba0_4e43_b6e4_1a797bb91728");
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// // config.setParam("TableName", "bionymoutlevfaked2csvpreprcsv");
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//
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// // config.setParam("TableName",
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// "timeseries_id08b3abb9_c7b0_4b82_8117_64b69055416f");
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// // config.setParam("TableName",
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// "occurrence_species_idaf35d737_fb3e_43a7_b13a_611dfa97b064");
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// config.setParam("TableName",
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// "generic_id037d302d_2ba0_4e43_b6e4_1a797bb91728");
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// config.setParam("ResourceName", "AquaMaps Service DataBase");
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// config.setParam("DatabaseName", "aquamapsorgupdated");
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// config.setParam("SchemaName", "public");
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// //
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// //
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// //
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// // config.setParam("TableName", "hspec2012_07_11_12_33_05_526");
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//
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// // config.setParam("TableName", "custom2013_12_04_15_27_16_493_cet");
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//
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// config.setParam("TableName", "hspec_suitable_peng_test_tbsp_1");
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// config.setParam("ResourceName", "AquaMaps Service DataBase");
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// config.setParam("DatabaseName", "aquamapsorgupdated");
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// config.setParam("SchemaName", "public");
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//// config.setParam("TableName", "hspec_suitable_peng_test_tbsp_1");
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// config.setParam("TableName", "hspen");
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// config.setParam("ResourceName", "Geoserver database ");
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// config.setParam("DatabaseName", "aquamapsdb");
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// config.setParam("SchemaName", "public");
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// config.setParam("TableName", "SeaVoX_sea_areas_polygons_v14");
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// Obis
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config.setParam("ResourceName", "Obis2Repository");
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config.setParam("DatabaseName", "obis");
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// config.setParam("SchemaName", "calc");
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// config.setParam("TableName", "map1d");
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config.setParam("SchemaName", "newd20110525");
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config.setParam("TableName", "edc");
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// config.setParam("Query", "select * from area limit 3");
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// config.setParam("Query",
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// "select text(the_geom) from \"Divisions\" limit 1");
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// config.setParam("TableName", "all_world");
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// config.setParam("TableName", "biodiversity_lme");
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config.setGcubeScope("/gcube/devsec");
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return config;
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}
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private static AlgorithmConfiguration testPostgis() {
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System.out.println("TEST 2: Postgis");
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AlgorithmConfiguration config = Regressor.getConfig();
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config.setAgent("RANDOMSAMPLEONTABLE");
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// A test with a database postgres
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config.setParam("ResourceName", "GP DB");
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config.setParam("DatabaseName", "aquamapsdb");
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config.setParam("SchemaName", "public");
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config.setParam("TableName", "Divisions");
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config.setGcubeScope("/gcube/devsec");
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return config;
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}
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private static AlgorithmConfiguration testMysql1() {
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System.out.println("TEST 3: Mysql1");
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AlgorithmConfiguration config = Regressor.getConfig();
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config.setAgent("RANDOMSAMPLEONTABLE");
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// A test with a database mysql
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config.setParam("ResourceName", "CatalogOfLife2010");
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config.setParam("DatabaseName", "col2oct2010");
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config.setParam("TableName", "common_names");
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// config.setParam("TableName", "Common_names"); // mysql is not case
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// sensitive
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// config.setParam("TableName", "databases");
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// config.setParam("TableName", "simple_search");
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config.setGcubeScope("/gcube/devsec");
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return config;
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}
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private static AlgorithmConfiguration testMysql2() {
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System.out.println("TEST 4: Mysql2");
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AlgorithmConfiguration config = Regressor.getConfig();
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config.setAgent("RANDOMSAMPLEONTABLE");
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// A test with a database mysql
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config.setParam("ResourceName", "CatalogOfLife2010");
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config.setParam("DatabaseName", "col2oct2010");
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config.setParam("TableName", "example"); // the table does not exist
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config.setGcubeScope("/gcube/devsec");
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return config;
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}
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private static AlgorithmConfiguration NullInputValue1() {
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System.out.println("TEST 5: Postgis NullInputValue1");
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AlgorithmConfiguration config = Regressor.getConfig();
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config.setAgent("RANDOMSAMPLEONTABLE");
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// a test with postgis
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// config.setParam("ResourceName", "Geoserver database ");
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config.setParam("DatabaseName", "aquamapsdb");
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config.setParam("SchemaName", "public");
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config.setParam("TableName", "Divisions");
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config.setGcubeScope("/gcube/devsec");
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return config;
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}
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private static AlgorithmConfiguration NullInputValue2() {
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System.out.println("TEST 6: Postgis NullInputValue2");
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AlgorithmConfiguration config = Regressor.getConfig();
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config.setAgent("RANDOMSAMPLEONTABLE");
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// a test with postgis
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config.setParam("ResourceName", "Geoserver database ");
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// config.setParam("DatabaseName", "aquamapsdb");
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config.setParam("SchemaName", "public");
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config.setParam("TableName", "Divisions");
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config.setGcubeScope("/gcube/devsec");
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return config;
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}
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private static AlgorithmConfiguration NullInputValue3() {
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System.out.println("TEST 7: Postgis NullInputValue3");
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AlgorithmConfiguration config = Regressor.getConfig();
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config.setAgent("RANDOMSAMPLEONTABLE");
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// a test with postgis
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config.setParam("ResourceName", "Geoserver database ");
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config.setParam("DatabaseName", "aquamapsdb");
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// config.setParam("SchemaName", "public");
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config.setParam("TableName", "Divisions");
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config.setGcubeScope("/gcube/devsec");
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return config;
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}
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private static AlgorithmConfiguration NullInputValue4() {
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System.out.println("TEST 8: Postgis NullInputValue4");
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AlgorithmConfiguration config = Regressor.getConfig();
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config.setAgent("RANDOMSAMPLEONTABLE");
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// a test with postgis
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config.setParam("ResourceName", "Geoserver database ");
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config.setParam("DatabaseName", "aquamapsdb");
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config.setParam("SchemaName", "public");
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// config.setParam("TableName", "Divisions");
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config.setGcubeScope("/gcube/devsec");
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return config;
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}
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}
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